Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:21:41 (2934714): wrapper (7.7.26015): starting
11:21:41 (2934714): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 11:21:41] Arguments: --nthreads 8
[2025-10-12 11:21:41] Threads: 8
[2025-10-12 11:21:41] Checking for CVMFS
[2025-10-12 11:21:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:21:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:21:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:21:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:21:41] 2.13.2.0 1338992 4243 60628 151615 2 56 3096403 4097025 0 130560 0 4380269 99.993 145499 26765 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-10-12 11:21:41] CVMFS is ok
[2025-10-12 11:21:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:21:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:21:41] Further information can be found at the LHC@home message board.
[2025-10-12 11:21:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:21:41] Checking for apptainer binary...
[2025-10-12 11:21:41] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-10-12 11:21:41] apptainer is not installed, using version from CVMFS
[2025-10-12 11:21:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:21:41] pckeatlas02
[2025-10-12 11:21:41] apptainer works
[2025-10-12 11:21:41] Set ATHENA_PROC_NUMBER=8
[2025-10-12 11:21:41] Set ATHENA_CORE_NUMBER=8
[2025-10-12 11:21:41] Starting ATLAS job with PandaID=6838913508
[2025-10-12 11:21:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 12:39:58]  *** The last 200 lines of the pilot log: ***
[2025-10-12 12:39:58]  scope=mc23_13p6TeV
[2025-10-12 12:39:58]  status=None
[2025-10-12 12:39:58]  status_code=0
[2025-10-12 12:39:58]  storage_token=
[2025-10-12 12:39:58]  surl=/var/lib/boinc/slots/19/PanDA_Pilot-6838913508/log.46676269._064841.job.log.tgz.1
[2025-10-12 12:39:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6f/b3/log.46676269._064841.job.log.tgz.1
[2025-10-12 12:39:58]  workdir=None
[2025-10-12 12:39:58] ]
[2025-10-12 12:39:58] 2025-10-12 10:39:11,638 | INFO     | transferring file log.46676269._064841.job.log.tgz.1 from /var/lib/boinc/slots/19/PanDA_Pilot-6838913508/log.46676269._064841.job.log.tgz.1 to /var/lib/boinc/slots
[2025-10-12 12:39:58] 2025-10-12 10:39:11,638 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/19/PanDA_Pilot-6838913508/log.46676269._064841.job.log.tgz.1 /var/lib/boinc/slots/19/log.46676269._064841.j
[2025-10-12 12:39:58] 2025-10-12 10:39:11,645 | INFO     | adding to output.list: log.46676269._064841.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6f/b3/log.46676269._064841.job.log.tg
[2025-10-12 12:39:58] 2025-10-12 10:39:11,645 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 12:39:58] 2025-10-12 10:39:11,645 | INFO     | summary of transferred files:
[2025-10-12 12:39:58] 2025-10-12 10:39:11,645 | INFO     |  -- lfn=log.46676269._064841.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 12:39:58] 2025-10-12 10:39:11,645 | INFO     | stage-out finished correctly
[2025-10-12 12:39:58] 2025-10-12 10:39:12,903 | INFO     | time since job start (4647s) is within the limit (172800.0s)
[2025-10-12 12:39:58] 2025-10-12 10:39:13,947 | INFO     | PID=2938467 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 12:39:58] 2025-10-12 10:39:13,948 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 12:39:58] 2025-10-12 10:39:13,982 | INFO     | job 6838913508 has state=finished
[2025-10-12 12:39:58] 2025-10-12 10:39:13,982 | INFO     | preparing for final server update for job 6838913508 in state='finished'
[2025-10-12 12:39:58] 2025-10-12 10:39:14,020 | WARNING  | process 2945769 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 12:39:58] 2025-10-12 10:39:14,021 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6838913508/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 12:39:58] 2025-10-12 10:39:14,050 | INFO     | number of running child processes to parent process 2945769: 1
[2025-10-12 12:39:58] 2025-10-12 10:39:14,050 | INFO     | maximum number of monitored processes: 6
[2025-10-12 12:39:58] 2025-10-12 10:39:14,559 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-12 12:39:58] 2025-10-12 10:39:14,559 | INFO     | this job has now completed (state=finished)
[2025-10-12 12:39:58] 2025-10-12 10:39:14,559 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 12:39:58] 2025-10-12 10:39:14,559 | INFO     | log transfer has been attempted: DONE
[2025-10-12 12:39:58] 2025-10-12 10:39:14,559 | INFO     | job 6838913508 has finished - writing final server update
[2025-10-12 12:39:58] 2025-10-12 10:39:14,559 | INFO     | total number of processed events: 400 (read)
[2025-10-12 12:39:58] 2025-10-12 10:39:14,560 | INFO     | executing command: lscpu
[2025-10-12 12:39:58] 2025-10-12 10:39:14,568 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 12:39:58] 2025-10-12 10:39:14,948 | INFO     | time since job start (4649s) is within the limit (172800.0s)
[2025-10-12 12:39:58] 2025-10-12 10:39:16,552 | INFO     | monitor loop #354: job 0:6838913508 is in state 'finished'
[2025-10-12 12:39:58] 2025-10-12 10:39:16,552 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 12:39:58] 2025-10-12 10:39:16,954 | INFO     | time since job start (4651s) is within the limit (172800.0s)
[2025-10-12 12:39:58] 2025-10-12 10:39:17,182 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 12:39:58] 2025-10-12 10:39:17,183 | INFO     | found 4 cores (4 cores per socket, 1 socket) HT, CPU MHz: 3877.2934999999998
[2025-10-12 12:39:58] 2025-10-12 10:39:17,183 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6838913508/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 12:39:58] 2025-10-12 10:39:17,184 | INFO     | extracted standard info from prmon json
[2025-10-12 12:39:58] 2025-10-12 10:39:17,184 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 12:39:58] 2025-10-12 10:39:17,184 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 12:39:58] 2025-10-12 10:39:17,184 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 12:39:58] 2025-10-12 10:39:17,184 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 12:39:58] 2025-10-12 10:39:17,185 | INFO     | fitting pss+swap vs Time
[2025-10-12 12:39:58] 2025-10-12 10:39:17,185 | INFO     | sum of square deviations: 101843770.0
[2025-10-12 12:39:58] 2025-10-12 10:39:17,185 | INFO     | sum of deviations: -14012939702.999996
[2025-10-12 12:39:58] 2025-10-12 10:39:17,185 | INFO     | mean x: 1760263303.0
[2025-10-12 12:39:58] 2025-10-12 10:39:17,185 | INFO     | mean y: 2807285.507246377
[2025-10-12 12:39:58] 2025-10-12 10:39:17,185 | INFO     | -- intersect: 242201849272.48996
[2025-10-12 12:39:58] 2025-10-12 10:39:17,185 | INFO     | intersect: 242201849272.48996
[2025-10-12 12:39:58] 2025-10-12 10:39:17,185 | INFO     | chi2: 0.11641945316628154
[2025-10-12 12:39:58] 2025-10-12 10:39:17,185 | INFO     | -- intersect: 242201849272.48996
[2025-10-12 12:39:58] 2025-10-12 10:39:17,185 | INFO     | current memory leak: -137.59 B/s (using 69 data points, chi2=0.12)
[2025-10-12 12:39:58] 2025-10-12 10:39:17,186 | INFO     | could have reported an average CPU frequency of 3762 MHz (6 samples)
[2025-10-12 12:39:58] 2025-10-12 10:39:17,186 | INFO     | ..............................
[2025-10-12 12:39:58] 2025-10-12 10:39:17,186 | INFO     | . Timing measurements:
[2025-10-12 12:39:58] 2025-10-12 10:39:17,186 | INFO     | . get job = 0 s
[2025-10-12 12:39:58] 2025-10-12 10:39:17,186 | INFO     | . initial setup = 0 s
[2025-10-12 12:39:58] 2025-10-12 10:39:17,186 | INFO     | . payload setup = 3 s
[2025-10-12 12:39:58] 2025-10-12 10:39:17,186 | INFO     | . stage-in = 0 s
[2025-10-12 12:39:58] 2025-10-12 10:39:17,186 | INFO     | . payload execution = 4626 s
[2025-10-12 12:39:58] 2025-10-12 10:39:17,186 | INFO     | . stage-out = 0 s
[2025-10-12 12:39:58] 2025-10-12 10:39:17,186 | INFO     | . log creation = 0 s
[2025-10-12 12:39:58] 2025-10-12 10:39:17,186 | INFO     | ..............................
[2025-10-12 12:39:58] 2025-10-12 10:39:17,662 | INFO     | 
[2025-10-12 12:39:58] 2025-10-12 10:39:17,662 | INFO     | job summary report
[2025-10-12 12:39:58] 2025-10-12 10:39:17,662 | INFO     | --------------------------------------------------
[2025-10-12 12:39:58] 2025-10-12 10:39:17,662 | INFO     | PanDA job id: 6838913508
[2025-10-12 12:39:58] 2025-10-12 10:39:17,662 | INFO     | task id: 46676269
[2025-10-12 12:39:58] 2025-10-12 10:39:17,662 | INFO     | errors: (none)
[2025-10-12 12:39:58] 2025-10-12 10:39:17,662 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 12:39:58] 2025-10-12 10:39:17,662 | INFO     | pilot state: finished 
[2025-10-12 12:39:58] 2025-10-12 10:39:17,662 | INFO     | transexitcode: 0
[2025-10-12 12:39:58] 2025-10-12 10:39:17,662 | INFO     | exeerrorcode: 0
[2025-10-12 12:39:58] 2025-10-12 10:39:17,662 | INFO     | exeerrordiag: 
[2025-10-12 12:39:58] 2025-10-12 10:39:17,662 | INFO     | exitcode: 0
[2025-10-12 12:39:58] 2025-10-12 10:39:17,663 | INFO     | exitmsg: OK
[2025-10-12 12:39:58] 2025-10-12 10:39:17,663 | INFO     | cpuconsumptiontime: 35133 s
[2025-10-12 12:39:58] 2025-10-12 10:39:17,663 | INFO     | nevents: 400
[2025-10-12 12:39:58] 2025-10-12 10:39:17,663 | INFO     | neventsw: 0
[2025-10-12 12:39:58] 2025-10-12 10:39:17,663 | INFO     | pid: 2945769
[2025-10-12 12:39:58] 2025-10-12 10:39:17,663 | INFO     | pgrp: 2945769
[2025-10-12 12:39:58] 2025-10-12 10:39:17,663 | INFO     | corecount: 8
[2025-10-12 12:39:58] 2025-10-12 10:39:17,663 | INFO     | event service: False
[2025-10-12 12:39:58] 2025-10-12 10:39:17,663 | INFO     | sizes: {0: 2348858, 2: 2349120, 11: 2349148, 4632: 2375407, 4633: 2384462, 4635: 2384462, 4639: 2384784}
[2025-10-12 12:39:58] 2025-10-12 10:39:17,663 | INFO     | --------------------------------------------------
[2025-10-12 12:39:58] 2025-10-12 10:39:17,663 | INFO     | 
[2025-10-12 12:39:58] 2025-10-12 10:39:17,663 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-10-12 12:39:58] 2025-10-12 10:39:17,671 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 12:39:58] 2025-10-12 10:39:17,672 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 12:39:58] 2025-10-12 10:39:17,672 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 12:39:58] 2025-10-12 10:39:17,672 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 12:39:58] 2025-10-12 10:39:17,672 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 12:39:58] 2025-10-12 10:39:17,672 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 12:39:58] 2025-10-12 10:39:17,672 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 12:39:58] 2025-10-12 10:39:17,672 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 12:39:58] 2025-10-12 10:39:17,672 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 12:39:58] 2025-10-12 10:39:17,672 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 12:39:58] 2025-10-12 10:39:17,672 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 12:39:58] 2025-10-12 10:39:17,672 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 12:39:58] 2025-10-12 10:39:17,672 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 12:39:58] 2025-10-12 10:39:17,672 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 12:39:58] 2025-10-12 10:39:17,672 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 12:39:58] 2025-10-12 10:39:17,672 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 12:39:58] 2025-10-12 10:39:17,672 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 12:39:58] 2025-10-12 10:39:17,672 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 12:39:58] 2025-10-12 10:39:17,672 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 12:39:58] 2025-10-12 10:39:17,672 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 12:39:58] 2025-10-12 10:39:17,672 | INFO     | job 6838913508 has completed (purged errors)
[2025-10-12 12:39:58] 2025-10-12 10:39:17,672 | INFO     | overall cleanup function is called
[2025-10-12 12:39:58] 2025-10-12 10:39:18,677 | INFO     | --- collectZombieJob: --- 10, [2945769]
[2025-10-12 12:39:58] 2025-10-12 10:39:18,677 | INFO     | zombie collector waiting for pid 2945769
[2025-10-12 12:39:58] 2025-10-12 10:39:18,677 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 12:39:58] 2025-10-12 10:39:18,677 | INFO     | collected zombie processes
[2025-10-12 12:39:58] 2025-10-12 10:39:18,677 | INFO     | will attempt to kill all subprocesses of pid=2945769
[2025-10-12 12:39:58] 2025-10-12 10:39:18,709 | INFO     | process IDs to be killed: [2945769] (in reverse order)
[2025-10-12 12:39:58] 2025-10-12 10:39:18,725 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 12:39:58] 2025-10-12 10:39:18,725 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 12:39:58] 2025-10-12 10:39:18,726 | INFO     | did not find any defunct processes belonging to 2945769
[2025-10-12 12:39:58] 2025-10-12 10:39:18,726 | INFO     | did not find any defunct processes belonging to 2945769
[2025-10-12 12:39:58] 2025-10-12 10:39:18,727 | INFO     | ready for new job
[2025-10-12 12:39:58] 2025-10-12 10:39:18,727 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 12:39:58] 2025-10-12 10:39:18,727 | INFO     | ***************************************
[2025-10-12 12:39:58] 2025-10-12 10:39:18,727 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 12:39:58] 2025-10-12 10:39:18,727 | INFO     | ***************************************
[2025-10-12 12:39:58] 2025-10-12 10:39:18,728 | INFO     | 
[2025-10-12 12:39:58] 2025-10-12 10:39:18,728 | INFO     | architecture information:
[2025-10-12 12:39:58] 2025-10-12 10:39:18,728 | INFO     | executing command: cat /etc/os-release
[2025-10-12 12:39:58] 2025-10-12 10:39:18,733 | INFO     | cat /etc/os-release:
[2025-10-12 12:39:58] NAME="CentOS Linux"
[2025-10-12 12:39:58] VERSION="7 (Core)"
[2025-10-12 12:39:58] ID="centos"
[2025-10-12 12:39:58] ID_LIKE="rhel fedora"
[2025-10-12 12:39:58] VERSION_ID="7"
[2025-10-12 12:39:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 12:39:58] ANSI_COLOR="0;31"
[2025-10-12 12:39:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 12:39:58] HOME_URL="https://www.centos.org/"
[2025-10-12 12:39:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 12:39:58] 
[2025-10-12 12:39:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 12:39:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 12:39:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 12:39:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 12:39:58] 
[2025-10-12 12:39:58] 2025-10-12 10:39:18,733 | INFO     | ***************************************
[2025-10-12 12:39:58] 2025-10-12 10:39:19,236 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-10-12 12:39:58] 2025-10-12 10:39:19,243 | INFO     | sufficient remaining disk space (118307684352 B)
[2025-10-12 12:39:58] 2025-10-12 10:39:19,243 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 12:39:58] 2025-10-12 10:39:19,243 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 12:39:58] 2025-10-12 10:39:19,243 | INFO     | update_server=False
[2025-10-12 12:39:58] 2025-10-12 10:39:19,243 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 12:39:58] 2025-10-12 10:39:19,265 | INFO     | all data control threads have been joined
[2025-10-12 12:39:58] 2025-10-12 10:39:19,530 | INFO     | all payload control threads have been joined
[2025-10-12 12:39:58] 2025-10-12 10:39:19,696 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 12:39:58] 2025-10-12 10:39:19,988 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 12:39:58] 2025-10-12 10:39:20,060 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:39:58] 2025-10-12 10:39:20,060 | INFO     | aborting loop
[2025-10-12 12:39:58] 2025-10-12 10:39:20,140 | INFO     | all job control threads have been joined
[2025-10-12 12:39:58] 2025-10-12 10:39:20,248 | INFO     | [job] retrieve thread has finished
[2025-10-12 12:39:58] 2025-10-12 10:39:20,271 | INFO     | [data] control thread has finished
[2025-10-12 12:39:58] 2025-10-12 10:39:20,298 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 12:39:58] 2025-10-12 10:39:20,324 | INFO     | [payload] validate_post thread has finished
[2025-10-12 12:39:58] 2025-10-12 10:39:20,349 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 12:39:58] 2025-10-12 10:39:20,536 | INFO     | [payload] control thread has finished
[2025-10-12 12:39:58] 2025-10-12 10:39:20,662 | INFO     | [data] copytool_in thread has finished
[2025-10-12 12:39:58] 2025-10-12 10:39:21,012 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 12:39:58] 2025-10-12 10:39:21,066 | INFO     | [job] job monitor thread has finished
[2025-10-12 12:39:58] 2025-10-12 10:39:21,146 | INFO     | [job] control thread has finished
[2025-10-12 12:39:58] 2025-10-12 10:39:21,361 | INFO     | [payload] failed_post thread has finished
[2025-10-12 12:39:58] 2025-10-12 10:39:21,702 | INFO     | [data] copytool_out thread has finished
[2025-10-12 12:39:58] 2025-10-12 10:39:21,702 | INFO     | [job] validate thread has finished
[2025-10-12 12:39:58] 2025-10-12 10:39:22,233 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:39:58] 2025-10-12 10:39:23,238 | INFO     | [job] queue monitor thread has finished
[2025-10-12 12:39:58] 2025-10-12 10:39:23,988 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 12:39:58] 2025-10-12 10:39:29,903 | INFO     | job.realtimelogging is not enabled
[2025-10-12 12:39:58] 2025-10-12 10:39:30,908 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 12:39:58] 2025-10-12 10:39:50,085 | INFO     | PID=2938467 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 12:39:58] 2025-10-12 10:39:50,086 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 12:39:58] 2025-10-12 10:39:50,086 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 12:39:58] 2025-10-12 10:39:50,086 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 12:39:58] 2025-10-12 10:39:52,711 | INFO     | [monitor] cgroup control has ended
[2025-10-12 12:39:58] 2025-10-12 10:39:53,728 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139919476442944)>', '<ExcThread(monitor, started 139918357559040)>']
[2025-10-12 12:39:58] 2025-10-12 10:39:54,106 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 12:39:58] 2025-10-12 10:39:54,106 | INFO     | [monitor] control thread has ended
[2025-10-12 12:39:58] 2025-10-12 10:39:58,754 | INFO     | all workflow threads have been joined
[2025-10-12 12:39:58] 2025-10-12 10:39:58,754 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 12:39:58] 2025-10-12 10:39:58,754 | INFO     | traces error code: 0
[2025-10-12 12:39:58] 2025-10-12 10:39:58,754 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 12:39:58] 2025-10-12 10:39:58,814 [wrapper] ==== pilot stdout END ====
[2025-10-12 12:39:58] 2025-10-12 10:39:58,815 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 12:39:58] 2025-10-12 10:39:58,816 [wrapper] pilotpid: 2938467
[2025-10-12 12:39:58] 2025-10-12 10:39:58,818 [wrapper] Pilot exit status: 0
[2025-10-12 12:39:58] 2025-10-12 10:39:58,822 [wrapper] pandaids: 6838913508
[2025-10-12 12:39:58] 2025-10-12 10:39:58,832 [wrapper] cleanup supervisor_pilot 2962329 2938468
[2025-10-12 12:39:58] 2025-10-12 10:39:58,833 [wrapper] Test setup, not cleaning
[2025-10-12 12:39:58] 2025-10-12 10:39:58,834 [wrapper] apfmon messages muted
[2025-10-12 12:39:58] 2025-10-12 10:39:58,835 [wrapper] ==== wrapper stdout END ====
[2025-10-12 12:39:58] 2025-10-12 10:39:58,836 [wrapper] ==== wrapper stderr END ====
[2025-10-12 12:39:58]  *** Error codes and diagnostics ***
[2025-10-12 12:39:58]     "exeErrorCode": 0,
[2025-10-12 12:39:58]     "exeErrorDiag": "",
[2025-10-12 12:39:58]     "pilotErrorCode": 0,
[2025-10-12 12:39:58]     "pilotErrorDiag": "",
[2025-10-12 12:39:58]  *** Listing of results directory ***
[2025-10-12 12:39:58] total 407988
[2025-10-12 12:39:58] -rw-r--r--. 1 boinc boinc    557409 Oct 11 22:36 pilot3.tar.gz
[2025-10-12 12:39:58] -rwx------. 1 boinc boinc     36292 Oct 11 22:52 runpilot2-wrapper.sh
[2025-10-12 12:39:58] -rw-r--r--. 1 boinc boinc      5112 Oct 11 22:52 queuedata.json
[2025-10-12 12:39:58] -rw-r--r--. 1 boinc boinc       100 Oct 12 11:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 12:39:58] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 11:21 run_atlas
[2025-10-12 12:39:58] -rw-r--r--. 1 boinc boinc       105 Oct 12 11:21 job.xml
[2025-10-12 12:39:58] -rw-r--r--. 1 boinc boinc      6275 Oct 12 11:21 init_data.xml
[2025-10-12 12:39:58] -rw-r--r--. 2 boinc boinc 218767141 Oct 12 11:21 EVNT.46676267._002604.pool.root.1
[2025-10-12 12:39:58] -rw-r--r--. 2 boinc boinc     15120 Oct 12 11:21 start_atlas.sh
[2025-10-12 12:39:58] drwxrwx--x. 2 boinc boinc        68 Oct 12 11:21 shared
[2025-10-12 12:39:58] -rw-r--r--. 2 boinc boinc    569677 Oct 12 11:21 input.tar.gz
[2025-10-12 12:39:58] -rw-r--r--. 1 boinc boinc         0 Oct 12 11:21 boinc_lockfile
[2025-10-12 12:39:58] -rw-r--r--. 1 boinc boinc      2550 Oct 12 11:21 pandaJob.out
[2025-10-12 12:39:58] -rw-------. 1 boinc boinc    975536 Oct 12 11:21 agis_schedconf.cvmfs.json
[2025-10-12 12:39:58] -rw-------. 1 boinc boinc   1560580 Oct 12 11:21 agis_ddmendpoints.agis.ALL.json
[2025-10-12 12:39:58] drwx------. 5 boinc boinc      4096 Oct 12 11:21 pilot3
[2025-10-12 12:39:58] -rw-------. 1 boinc boinc 193088413 Oct 12 12:38 HITS.46676269._064841.pool.root.1
[2025-10-12 12:39:58] -rw-------. 1 boinc boinc      1014 Oct 12 12:39 memory_monitor_summary.json
[2025-10-12 12:39:58] -rw-r--r--. 1 boinc boinc       529 Oct 12 12:39 boinc_task_state.xml
[2025-10-12 12:39:58] -rw-------. 1 boinc boinc    334732 Oct 12 12:39 log.46676269._064841.job.log.tgz.1
[2025-10-12 12:39:58] -rw-------. 1 boinc boinc        95 Oct 12 12:39 pilot_heartbeat.json
[2025-10-12 12:39:58] -rw-------. 1 boinc boinc      7779 Oct 12 12:39 heartbeat.json
[2025-10-12 12:39:58] -rw-r--r--. 1 boinc boinc      8192 Oct 12 12:39 boinc_mmap_file
[2025-10-12 12:39:58] -rw-r--r--. 1 boinc boinc        27 Oct 12 12:39 wrapper_checkpoint.txt
[2025-10-12 12:39:58] -rw-------. 1 boinc boinc      4822 Oct 12 12:39 pilotlog.txt
[2025-10-12 12:39:58] -rw-------. 1 boinc boinc    684620 Oct 12 12:39 log.46676269._064841.job.log.1
[2025-10-12 12:39:58] -rw-------. 1 boinc boinc       357 Oct 12 12:39 output.list
[2025-10-12 12:39:58] -rw-r--r--. 1 boinc boinc       620 Oct 12 12:39 runtime_log
[2025-10-12 12:39:58] -rw-------. 1 boinc boinc   1034240 Oct 12 12:39 result.tar.gz
[2025-10-12 12:39:58] -rw-r--r--. 1 boinc boinc      8730 Oct 12 12:39 runtime_log.err
[2025-10-12 12:39:58] -rw-------. 1 boinc boinc       649 Oct 12 12:39 EXILDmokvR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmSbhNDmZleo3m.diag
[2025-10-12 12:39:58] -rw-r--r--. 1 boinc boinc     22135 Oct 12 12:39 stderr.txt
[2025-10-12 12:39:58] HITS file was successfully produced:
[2025-10-12 12:39:58] -rw-------. 1 boinc boinc 193088413 Oct 12 12:38 shared/HITS.pool.root.1
[2025-10-12 12:39:58]  *** Contents of shared directory: ***
[2025-10-12 12:39:58] total 403792
[2025-10-12 12:39:58] -rw-r--r--. 2 boinc boinc 218767141 Oct 12 11:21 ATLAS.root_0
[2025-10-12 12:39:58] -rw-r--r--. 2 boinc boinc     15120 Oct 12 11:21 start_atlas.sh
[2025-10-12 12:39:58] -rw-r--r--. 2 boinc boinc    569677 Oct 12 11:21 input.tar.gz
[2025-10-12 12:39:58] -rw-------. 1 boinc boinc 193088413 Oct 12 12:38 HITS.pool.root.1
[2025-10-12 12:39:58] -rw-------. 1 boinc boinc   1034240 Oct 12 12:39 result.tar.gz
12:40:00 (2934714): run_atlas exited; CPU time 35168.495785
12:40:00 (2934714): called boinc_finish(0)

</stderr_txt>
]]>

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