Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:41:30 (444780): wrapper (7.7.26015): starting
17:41:30 (444780): wrapper: running run_atlas (--nthreads 6)
[2025-10-12 17:41:30] Arguments: --nthreads 6
[2025-10-12 17:41:30] Threads: 6
[2025-10-12 17:41:30] Checking for CVMFS
[2025-10-12 17:41:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 17:41:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 17:41:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 17:41:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 17:41:30] 2.13.2.0 410933 50 52236 151625 1 57 16306384 81920001 0 130560 0 70014 99.985 3993 4648 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://147.213.204.101:3128 1
[2025-10-12 17:41:30] CVMFS is ok
[2025-10-12 17:41:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 17:41:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 17:41:30] Further information can be found at the LHC@home message board.
[2025-10-12 17:41:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 17:41:30] Checking for apptainer binary...
[2025-10-12 17:41:30] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/var/lib/snapd/snap/bin)
[2025-10-12 17:41:30] apptainer is not installed, using version from CVMFS
[2025-10-12 17:41:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 17:41:30] monitor-atlas.iep
[2025-10-12 17:41:30] apptainer works
[2025-10-12 17:41:30] Set ATHENA_PROC_NUMBER=6
[2025-10-12 17:41:30] Set ATHENA_CORE_NUMBER=6
[2025-10-12 17:41:30] Starting ATLAS job with PandaID=6838852577
[2025-10-12 17:41:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:32:45]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:32:45]  protocol_id=None
[2025-10-12 18:32:45]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 18:32:45]  replicas=None
[2025-10-12 18:32:45]  scope=mc23_13p6TeV
[2025-10-12 18:32:45]  status=None
[2025-10-12 18:32:45]  status_code=0
[2025-10-12 18:32:45]  storage_token=
[2025-10-12 18:32:45]  surl=/var/lib/boinc/slots/4/PanDA_Pilot-6838852577/log.46676269._064359.job.log.tgz.1
[2025-10-12 18:32:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/26/67/log.46676269._064359.job.log.tgz.1
[2025-10-12 18:32:45]  workdir=None
[2025-10-12 18:32:45] ]
[2025-10-12 18:32:45] 2025-10-12 16:32:04,143 | INFO     | transferring file log.46676269._064359.job.log.tgz.1 from /var/lib/boinc/slots/4/PanDA_Pilot-6838852577/log.46676269._064359.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 18:32:45] 2025-10-12 16:32:04,143 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/4/PanDA_Pilot-6838852577/log.46676269._064359.job.log.tgz.1 /var/lib/boinc/slots/4/log.46676269._064359.job
[2025-10-12 18:32:45] 2025-10-12 16:32:04,150 | INFO     | adding to output.list: log.46676269._064359.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/26/67/log.46676269._064359.job.log.tg
[2025-10-12 18:32:45] 2025-10-12 16:32:04,151 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 18:32:45] 2025-10-12 16:32:04,151 | INFO     | summary of transferred files:
[2025-10-12 18:32:45] 2025-10-12 16:32:04,151 | INFO     |  -- lfn=log.46676269._064359.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 18:32:45] 2025-10-12 16:32:04,151 | INFO     | stage-out finished correctly
[2025-10-12 18:32:45] 2025-10-12 16:32:05,813 | INFO     | time since job start (3030s) is within the limit (172800.0s)
[2025-10-12 18:32:45] 2025-10-12 16:32:07,092 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 18:32:45] 2025-10-12 16:32:07,819 | INFO     | time since job start (3032s) is within the limit (172800.0s)
[2025-10-12 18:32:45] 2025-10-12 16:32:09,170 | INFO     | job 6838852577 has state=finished
[2025-10-12 18:32:45] 2025-10-12 16:32:09,170 | INFO     | preparing for final server update for job 6838852577 in state='finished'
[2025-10-12 18:32:45] 2025-10-12 16:32:09,170 | INFO     | this job has now completed (state=finished)
[2025-10-12 18:32:45] 2025-10-12 16:32:09,170 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 18:32:45] 2025-10-12 16:32:09,170 | INFO     | log transfer has been attempted: DONE
[2025-10-12 18:32:45] 2025-10-12 16:32:09,170 | INFO     | job 6838852577 has finished - writing final server update
[2025-10-12 18:32:45] 2025-10-12 16:32:09,170 | INFO     | total number of processed events: 400 (read)
[2025-10-12 18:32:45] 2025-10-12 16:32:09,171 | INFO     | executing command: lscpu
[2025-10-12 18:32:45] 2025-10-12 16:32:09,179 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 18:32:45] 2025-10-12 16:32:09,824 | INFO     | time since job start (3034s) is within the limit (172800.0s)
[2025-10-12 18:32:45] 2025-10-12 16:32:10,556 | WARNING  | process 455032 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 18:32:45] 2025-10-12 16:32:10,556 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6838852577/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 18:32:45] 2025-10-12 16:32:10,589 | INFO     | number of running child processes to parent process 455032: 1
[2025-10-12 18:32:45] 2025-10-12 16:32:10,589 | INFO     | maximum number of monitored processes: 6
[2025-10-12 18:32:45] 2025-10-12 16:32:11,829 | INFO     | time since job start (3036s) is within the limit (172800.0s)
[2025-10-12 18:32:45] 2025-10-12 16:32:12,782 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 18:32:45] 2025-10-12 16:32:12,782 | INFO     | found 6 cores (6 cores per socket, 1 socket) , CPU MHz: 4301.645666666666
[2025-10-12 18:32:45] 2025-10-12 16:32:12,783 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6838852577/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 18:32:45] 2025-10-12 16:32:12,783 | INFO     | extracted standard info from prmon json
[2025-10-12 18:32:45] 2025-10-12 16:32:12,783 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 18:32:45] 2025-10-12 16:32:12,783 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 18:32:45] 2025-10-12 16:32:12,783 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 18:32:45] 2025-10-12 16:32:12,783 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 18:32:45] 2025-10-12 16:32:12,784 | INFO     | fitting pss+swap vs Time
[2025-10-12 18:32:45] 2025-10-12 16:32:12,784 | INFO     | sum of square deviations: 24640462.0
[2025-10-12 18:32:45] 2025-10-12 16:32:12,784 | INFO     | sum of deviations: 252978468.0
[2025-10-12 18:32:45] 2025-10-12 16:32:12,784 | INFO     | mean x: 1760285297.0
[2025-10-12 18:32:45] 2025-10-12 16:32:12,784 | INFO     | mean y: 2900361.8139534886
[2025-10-12 18:32:45] 2025-10-12 16:32:12,784 | INFO     | -- intersect: -18069580490.127254
[2025-10-12 18:32:45] 2025-10-12 16:32:12,784 | INFO     | intersect: -18069580490.127254
[2025-10-12 18:32:45] 2025-10-12 16:32:12,784 | INFO     | chi2: 0.00029565120914784956
[2025-10-12 18:32:45] 2025-10-12 16:32:12,784 | INFO     | -- intersect: -18069580490.127254
[2025-10-12 18:32:45] 2025-10-12 16:32:12,784 | INFO     | current memory leak: 10.27 B/s (using 43 data points, chi2=0.00)
[2025-10-12 18:32:45] 2025-10-12 16:32:12,784 | INFO     | could have reported an average CPU frequency of 4300 MHz (5 samples)
[2025-10-12 18:32:45] 2025-10-12 16:32:12,784 | INFO     | ..............................
[2025-10-12 18:32:45] 2025-10-12 16:32:12,784 | INFO     | . Timing measurements:
[2025-10-12 18:32:45] 2025-10-12 16:32:12,784 | INFO     | . get job = 0 s
[2025-10-12 18:32:45] 2025-10-12 16:32:12,784 | INFO     | . initial setup = 1 s
[2025-10-12 18:32:45] 2025-10-12 16:32:12,784 | INFO     | . payload setup = 2 s
[2025-10-12 18:32:45] 2025-10-12 16:32:12,784 | INFO     | . stage-in = 0 s
[2025-10-12 18:32:45] 2025-10-12 16:32:12,785 | INFO     | . payload execution = 3011 s
[2025-10-12 18:32:45] 2025-10-12 16:32:12,785 | INFO     | . stage-out = 0 s
[2025-10-12 18:32:45] 2025-10-12 16:32:12,785 | INFO     | . log creation = 0 s
[2025-10-12 18:32:45] 2025-10-12 16:32:12,785 | INFO     | ..............................
[2025-10-12 18:32:45] 2025-10-12 16:32:12,815 | INFO     | 
[2025-10-12 18:32:45] 2025-10-12 16:32:12,815 | INFO     | job summary report
[2025-10-12 18:32:45] 2025-10-12 16:32:12,815 | INFO     | --------------------------------------------------
[2025-10-12 18:32:45] 2025-10-12 16:32:12,815 | INFO     | PanDA job id: 6838852577
[2025-10-12 18:32:45] 2025-10-12 16:32:12,815 | INFO     | task id: 46676269
[2025-10-12 18:32:45] 2025-10-12 16:32:12,815 | INFO     | errors: (none)
[2025-10-12 18:32:45] 2025-10-12 16:32:12,815 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 18:32:45] 2025-10-12 16:32:12,815 | INFO     | pilot state: finished 
[2025-10-12 18:32:45] 2025-10-12 16:32:12,815 | INFO     | transexitcode: 0
[2025-10-12 18:32:45] 2025-10-12 16:32:12,815 | INFO     | exeerrorcode: 0
[2025-10-12 18:32:45] 2025-10-12 16:32:12,815 | INFO     | exeerrordiag: 
[2025-10-12 18:32:45] 2025-10-12 16:32:12,815 | INFO     | exitcode: 0
[2025-10-12 18:32:45] 2025-10-12 16:32:12,815 | INFO     | exitmsg: OK
[2025-10-12 18:32:45] 2025-10-12 16:32:12,815 | INFO     | cpuconsumptiontime: 16935 s
[2025-10-12 18:32:45] 2025-10-12 16:32:12,815 | INFO     | nevents: 400
[2025-10-12 18:32:45] 2025-10-12 16:32:12,815 | INFO     | neventsw: 0
[2025-10-12 18:32:45] 2025-10-12 16:32:12,815 | INFO     | pid: 455032
[2025-10-12 18:32:45] 2025-10-12 16:32:12,815 | INFO     | pgrp: 455032
[2025-10-12 18:32:45] 2025-10-12 16:32:12,815 | INFO     | corecount: 6
[2025-10-12 18:32:45] 2025-10-12 16:32:12,816 | INFO     | event service: False
[2025-10-12 18:32:45] 2025-10-12 16:32:12,816 | INFO     | sizes: {0: 2348854, 1: 2349116, 11: 2349144, 3016: 2374600, 3017: 2383598, 3020: 2383654, 3025: 2384008}
[2025-10-12 18:32:45] 2025-10-12 16:32:12,816 | INFO     | --------------------------------------------------
[2025-10-12 18:32:45] 2025-10-12 16:32:12,816 | INFO     | 
[2025-10-12 18:32:45] 2025-10-12 16:32:12,816 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-10-12 18:32:45] 2025-10-12 16:32:12,824 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 18:32:45] 2025-10-12 16:32:12,824 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 18:32:45] 2025-10-12 16:32:12,824 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 18:32:45] 2025-10-12 16:32:12,824 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 18:32:45] 2025-10-12 16:32:12,824 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 18:32:45] 2025-10-12 16:32:12,824 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 18:32:45] 2025-10-12 16:32:12,825 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 18:32:45] 2025-10-12 16:32:12,825 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 18:32:45] 2025-10-12 16:32:12,825 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 18:32:45] 2025-10-12 16:32:12,825 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 18:32:45] 2025-10-12 16:32:12,825 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 18:32:45] 2025-10-12 16:32:12,825 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 18:32:45] 2025-10-12 16:32:12,825 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 18:32:45] 2025-10-12 16:32:12,825 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 18:32:45] 2025-10-12 16:32:12,825 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 18:32:45] 2025-10-12 16:32:12,825 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 18:32:45] 2025-10-12 16:32:12,825 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 18:32:45] 2025-10-12 16:32:12,825 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 18:32:45] 2025-10-12 16:32:12,825 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 18:32:45] 2025-10-12 16:32:12,825 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 18:32:45] 2025-10-12 16:32:12,825 | INFO     | job 6838852577 has completed (purged errors)
[2025-10-12 18:32:45] 2025-10-12 16:32:12,825 | INFO     | overall cleanup function is called
[2025-10-12 18:32:45] 2025-10-12 16:32:13,828 | INFO     | --- collectZombieJob: --- 10, [455032]
[2025-10-12 18:32:45] 2025-10-12 16:32:13,828 | INFO     | zombie collector waiting for pid 455032
[2025-10-12 18:32:45] 2025-10-12 16:32:13,828 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:32:45] 2025-10-12 16:32:13,828 | INFO     | collected zombie processes
[2025-10-12 18:32:45] 2025-10-12 16:32:13,828 | INFO     | will attempt to kill all subprocesses of pid=455032
[2025-10-12 18:32:45] 2025-10-12 16:32:13,860 | INFO     | process IDs to be killed: [455032] (in reverse order)
[2025-10-12 18:32:45] 2025-10-12 16:32:13,876 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:32:45] 2025-10-12 16:32:13,877 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:32:45] 2025-10-12 16:32:13,878 | INFO     | did not find any defunct processes belonging to 455032
[2025-10-12 18:32:45] 2025-10-12 16:32:13,878 | INFO     | did not find any defunct processes belonging to 455032
[2025-10-12 18:32:45] 2025-10-12 16:32:13,878 | INFO     | ready for new job
[2025-10-12 18:32:45] 2025-10-12 16:32:13,879 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:32:45] 2025-10-12 16:32:13,879 | INFO     | ***************************************
[2025-10-12 18:32:45] 2025-10-12 16:32:13,879 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 18:32:45] 2025-10-12 16:32:13,879 | INFO     | ***************************************
[2025-10-12 18:32:45] 2025-10-12 16:32:13,879 | INFO     | 
[2025-10-12 18:32:45] 2025-10-12 16:32:13,879 | INFO     | architecture information:
[2025-10-12 18:32:45] 2025-10-12 16:32:13,879 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:32:45] 2025-10-12 16:32:13,885 | INFO     | cat /etc/os-release:
[2025-10-12 18:32:45] NAME="CentOS Linux"
[2025-10-12 18:32:45] VERSION="7 (Core)"
[2025-10-12 18:32:45] ID="centos"
[2025-10-12 18:32:45] ID_LIKE="rhel fedora"
[2025-10-12 18:32:45] VERSION_ID="7"
[2025-10-12 18:32:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:32:45] ANSI_COLOR="0;31"
[2025-10-12 18:32:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:32:45] HOME_URL="https://www.centos.org/"
[2025-10-12 18:32:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:32:45] 
[2025-10-12 18:32:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:32:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:32:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:32:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:32:45] 
[2025-10-12 18:32:45] 2025-10-12 16:32:13,885 | INFO     | ***************************************
[2025-10-12 18:32:45] 2025-10-12 16:32:14,388 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-10-12 18:32:45] 2025-10-12 16:32:14,394 | INFO     | sufficient remaining disk space (871902478336 B)
[2025-10-12 18:32:45] 2025-10-12 16:32:14,394 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:32:45] 2025-10-12 16:32:14,394 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:32:45] 2025-10-12 16:32:14,394 | INFO     | update_server=False
[2025-10-12 18:32:45] 2025-10-12 16:32:14,394 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:32:45] 2025-10-12 16:32:14,394 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:32:45] 2025-10-12 16:32:14,394 | INFO     | aborting loop
[2025-10-12 18:32:45] 2025-10-12 16:32:14,394 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:32:45] 2025-10-12 16:32:14,695 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:32:45] 2025-10-12 16:32:14,938 | INFO     | all payload control threads have been joined
[2025-10-12 18:32:45] 2025-10-12 16:32:14,944 | INFO     | all job control threads have been joined
[2025-10-12 18:32:45] 2025-10-12 16:32:15,399 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:32:45] 2025-10-12 16:32:15,399 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:32:45] 2025-10-12 16:32:15,400 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:32:45] 2025-10-12 16:32:15,448 | INFO     | all data control threads have been joined
[2025-10-12 18:32:45] 2025-10-12 16:32:15,943 | INFO     | [payload] control thread has finished
[2025-10-12 18:32:45] 2025-10-12 16:32:15,948 | INFO     | [job] control thread has finished
[2025-10-12 18:32:45] 2025-10-12 16:32:16,095 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:32:45] 2025-10-12 16:32:16,432 | INFO     | [job] validate thread has finished
[2025-10-12 18:32:45] 2025-10-12 16:32:16,453 | INFO     | [data] control thread has finished
[2025-10-12 18:32:45] 2025-10-12 16:32:16,489 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:32:45] 2025-10-12 16:32:16,587 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:32:45] 2025-10-12 16:32:16,590 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:32:45] 2025-10-12 16:32:16,591 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:32:45] 2025-10-12 16:32:16,700 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:32:45] 2025-10-12 16:32:16,868 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:32:45] 2025-10-12 16:32:17,630 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:32:45] 2025-10-12 16:32:21,636 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:32:45] 2025-10-12 16:32:25,207 | INFO     | job.realtimelogging is not enabled
[2025-10-12 18:32:45] 2025-10-12 16:32:26,212 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:32:45] 2025-10-12 16:32:39,592 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:32:45] 2025-10-12 16:32:40,116 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140502008989504)>', '<ExcThread(monitor, started 140501156079360)>']
[2025-10-12 18:32:45] 2025-10-12 16:32:44,966 | INFO     | PID=448468 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 18:32:45] 2025-10-12 16:32:44,966 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:32:45] 2025-10-12 16:32:44,966 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:32:45] 2025-10-12 16:32:44,966 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:32:45] 2025-10-12 16:32:44,966 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:32:45] 2025-10-12 16:32:44,966 | INFO     | [monitor] control thread has ended
[2025-10-12 18:32:45] 2025-10-12 16:32:45,141 | INFO     | all workflow threads have been joined
[2025-10-12 18:32:45] 2025-10-12 16:32:45,141 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:32:45] 2025-10-12 16:32:45,141 | INFO     | traces error code: 0
[2025-10-12 18:32:45] 2025-10-12 16:32:45,141 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:32:45] 2025-10-12 16:32:45,185 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:32:45] 2025-10-12 16:32:45,186 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:32:45] 2025-10-12 16:32:45,187 [wrapper] pilotpid: 448468
[2025-10-12 18:32:45] 2025-10-12 16:32:45,188 [wrapper] Pilot exit status: 0
[2025-10-12 18:32:45] 2025-10-12 16:32:45,191 [wrapper] pandaids: 6838852577
[2025-10-12 18:32:45] 2025-10-12 16:32:45,200 [wrapper] cleanup supervisor_pilot  470136 448469
[2025-10-12 18:32:45] 2025-10-12 16:32:45,201 [wrapper] Test setup, not cleaning
[2025-10-12 18:32:45] 2025-10-12 16:32:45,202 [wrapper] apfmon messages muted
[2025-10-12 18:32:45] 2025-10-12 16:32:45,203 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:32:45] 2025-10-12 16:32:45,204 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:32:45]  *** Error codes and diagnostics ***
[2025-10-12 18:32:45]     "exeErrorCode": 0,
[2025-10-12 18:32:45]     "exeErrorDiag": "",
[2025-10-12 18:32:45]     "pilotErrorCode": 0,
[2025-10-12 18:32:45]     "pilotErrorDiag": "",
[2025-10-12 18:32:45]  *** Listing of results directory ***
[2025-10-12 18:32:45] total 413104
[2025-10-12 18:32:45] -rw-r--r-- 1 boinc boinc    557409 Oct 11 22:21 pilot3.tar.gz
[2025-10-12 18:32:45] -rw-r--r-- 1 boinc boinc      5112 Oct 11 22:34 queuedata.json
[2025-10-12 18:32:45] -rwx------ 1 boinc boinc     36292 Oct 11 22:34 runpilot2-wrapper.sh
[2025-10-12 18:32:45] -rw-r--r-- 1 boinc boinc       100 Oct 12 17:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:32:45] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 17:41 run_atlas
[2025-10-12 18:32:45] -rw-r--r-- 1 boinc boinc       105 Oct 12 17:41 job.xml
[2025-10-12 18:32:45] -rw-r--r-- 1 boinc boinc      6549 Oct 12 17:41 init_data.xml
[2025-10-12 18:32:45] -rw-r--r-- 2 boinc boinc 221730519 Oct 12 17:41 EVNT.46676267._002587.pool.root.1
[2025-10-12 18:32:45] -rw-r--r-- 2 boinc boinc     15120 Oct 12 17:41 start_atlas.sh
[2025-10-12 18:32:45] drwxrwx--x 2 boinc boinc        68 Oct 12 17:41 shared
[2025-10-12 18:32:45] -rw-r--r-- 2 boinc boinc    569677 Oct 12 17:41 input.tar.gz
[2025-10-12 18:32:45] -rw-r--r-- 1 boinc boinc         0 Oct 12 17:41 boinc_lockfile
[2025-10-12 18:32:45] -rw-r--r-- 1 boinc boinc      2548 Oct 12 17:41 pandaJob.out
[2025-10-12 18:32:45] -rw------- 1 boinc boinc    975528 Oct 12 17:41 agis_schedconf.cvmfs.json
[2025-10-12 18:32:45] -rw------- 1 boinc boinc   1560580 Oct 12 17:41 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:32:45] drwx------ 5 boinc boinc      4096 Oct 12 17:41 pilot3
[2025-10-12 18:32:45] -rw------- 1 boinc boinc 195960016 Oct 12 18:31 HITS.46676269._064359.pool.root.1
[2025-10-12 18:32:45] -rw------- 1 boinc boinc        95 Oct 12 18:31 pilot_heartbeat.json
[2025-10-12 18:32:45] -rw-r--r-- 1 boinc boinc       529 Oct 12 18:31 boinc_task_state.xml
[2025-10-12 18:32:45] -rw------- 1 boinc boinc      1014 Oct 12 18:32 memory_monitor_summary.json
[2025-10-12 18:32:45] -rw------- 1 boinc boinc    256719 Oct 12 18:32 log.46676269._064359.job.log.tgz.1
[2025-10-12 18:32:45] -rw------- 1 boinc boinc      7778 Oct 12 18:32 heartbeat.json
[2025-10-12 18:32:45] -rw-r--r-- 1 boinc boinc      8192 Oct 12 18:32 boinc_mmap_file
[2025-10-12 18:32:45] -rw-r--r-- 1 boinc boinc        27 Oct 12 18:32 wrapper_checkpoint.txt
[2025-10-12 18:32:45] -rw------- 1 boinc boinc      4820 Oct 12 18:32 pilotlog.txt
[2025-10-12 18:32:45] -rw------- 1 boinc boinc    464871 Oct 12 18:32 log.46676269._064359.job.log.1
[2025-10-12 18:32:45] -rw------- 1 boinc boinc       357 Oct 12 18:32 output.list
[2025-10-12 18:32:45] -rw-r--r-- 1 boinc boinc       620 Oct 12 18:32 runtime_log
[2025-10-12 18:32:45] -rw------- 1 boinc boinc    737280 Oct 12 18:32 result.tar.gz
[2025-10-12 18:32:45] -rw-r--r-- 1 boinc boinc      8716 Oct 12 18:32 runtime_log.err
[2025-10-12 18:32:45] -rw------- 1 boinc boinc       654 Oct 12 18:32 9RALDmpTvR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6WhNDmuPUFrn.diag
[2025-10-12 18:32:45] -rw-r--r-- 1 boinc boinc     21885 Oct 12 18:32 stderr.txt
[2025-10-12 18:32:45] HITS file was successfully produced:
[2025-10-12 18:32:45] -rw------- 1 boinc boinc 195960016 Oct 12 18:31 shared/HITS.pool.root.1
[2025-10-12 18:32:45]  *** Contents of shared directory: ***
[2025-10-12 18:32:45] total 409200
[2025-10-12 18:32:45] -rw-r--r-- 2 boinc boinc 221730519 Oct 12 17:41 ATLAS.root_0
[2025-10-12 18:32:45] -rw-r--r-- 2 boinc boinc     15120 Oct 12 17:41 start_atlas.sh
[2025-10-12 18:32:45] -rw-r--r-- 2 boinc boinc    569677 Oct 12 17:41 input.tar.gz
[2025-10-12 18:32:45] -rw------- 1 boinc boinc 195960016 Oct 12 18:31 HITS.pool.root.1
[2025-10-12 18:32:45] -rw------- 1 boinc boinc    737280 Oct 12 18:32 result.tar.gz
18:32:47 (444780): run_atlas exited; CPU time 16949.159614
18:32:47 (444780): called boinc_finish(0)

</stderr_txt>
]]>

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