Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:20 (108120): wrapper (7.7.26015): starting
00:00:20 (108120): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 00:00:20] Arguments: --nthreads 9
[2025-10-12 00:00:20] Threads: 9
[2025-10-12 00:00:20] Checking for CVMFS
[2025-10-12 00:00:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 00:00:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 00:00:22] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 00:00:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 00:00:24] 2.13.2.0 981271 128754 273816 151606 0 343 31690565 32935936 35064 16776704 0 101805847 99.686 80496746 29682 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 00:00:24] CVMFS is ok
[2025-10-12 00:00:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 00:00:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 00:00:24] Further information can be found at the LHC@home message board.
[2025-10-12 00:00:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 00:00:24] Checking for apptainer binary...
[2025-10-12 00:00:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 00:00:24] Running /usr/bin/apptainer --version
[2025-10-12 00:00:24] apptainer version 1.4.3-1.el9
[2025-10-12 00:00:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 00:00:26] c-4-36.aglt2.org
[2025-10-12 00:00:26] apptainer works
[2025-10-12 00:00:26] Set ATHENA_PROC_NUMBER=9
[2025-10-12 00:00:26] Set ATHENA_CORE_NUMBER=9
[2025-10-12 00:00:26] Starting ATLAS job with PandaID=6838912955
[2025-10-12 00:00:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:44:44]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:44:44] 2025-10-13 05:29:36,459 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:44:44] 2025-10-13 05:29:38,989 | INFO     | monitor loop #3537: job 0:6838912955 is in state 'finished'
[2025-10-13 01:44:44] 2025-10-13 05:29:38,989 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:44:44] 2025-10-13 05:29:41,597 | INFO     | monitor loop #3538: job 0:6838912955 is in state 'finished'
[2025-10-13 01:44:44] 2025-10-13 05:29:41,597 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:44:44] 2025-10-13 05:29:41,854 | INFO     | PID=121575 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 01:44:44] 2025-10-13 05:29:41,954 | INFO     | .. there are 32 such processes running
[2025-10-13 01:44:44] 2025-10-13 05:29:42,957 | INFO     | time since job start (91615s) is within the limit (172800.0s)
[2025-10-13 01:44:44] 2025-10-13 05:29:43,692 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 01:44:44] 2025-10-13 05:29:43,792 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1696249999986
[2025-10-13 01:44:44] 2025-10-13 05:29:43,864 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6838912955/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 01:44:44] 2025-10-13 05:29:43,865 | INFO     | extracted standard info from prmon json
[2025-10-13 01:44:44] 2025-10-13 05:29:43,865 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 01:44:44] 2025-10-13 05:29:43,866 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 01:44:44] 2025-10-13 05:29:43,896 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 01:44:44] 2025-10-13 05:29:43,896 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 01:44:44] 2025-10-13 05:29:44,000 | INFO     | fitting pss+swap vs Time
[2025-10-13 01:44:44] 2025-10-13 05:29:44,004 | INFO     | sum of square deviations: 1036065082634.8601
[2025-10-13 01:44:44] 2025-10-13 05:29:44,118 | INFO     | monitor loop #3539: job 0:6838912955 is in state 'finished'
[2025-10-13 01:44:44] 2025-10-13 05:29:44,118 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:44:44] 2025-10-13 05:29:44,166 | INFO     | sum of deviations: 2363179418184.5312
[2025-10-13 01:44:44] 2025-10-13 05:29:44,167 | INFO     | mean x: 1760287624.5571907
[2025-10-13 01:44:44] 2025-10-13 05:29:44,167 | INFO     | mean y: 2091633.145819398
[2025-10-13 01:44:44] 2025-10-13 05:29:44,167 | INFO     | -- intersect: -4012979962.4139314
[2025-10-13 01:44:44] 2025-10-13 05:29:44,167 | INFO     | intersect: -4012979962.4139314
[2025-10-13 01:44:44] 2025-10-13 05:29:44,191 | INFO     | chi2: 17.60969366335146
[2025-10-13 01:44:44] 2025-10-13 05:29:44,194 | INFO     | sum of square deviations: 1025704407550.8032
[2025-10-13 01:44:44] 2025-10-13 05:29:44,876 | INFO     | sum of deviations: 2747811800796.1074
[2025-10-13 01:44:44] 2025-10-13 05:29:44,876 | INFO     | mean x: 1760287472.0590603
[2025-10-13 01:44:44] 2025-10-13 05:29:44,877 | INFO     | mean y: 2097294.555704698
[2025-10-13 01:44:44] 2025-10-13 05:29:44,877 | INFO     | -- intersect: -4713626507.457752
[2025-10-13 01:44:44] 2025-10-13 05:29:44,877 | INFO     | intersect: -4713626507.457752
[2025-10-13 01:44:44] 2025-10-13 05:29:44,879 | INFO     | chi2: 14.298344580069159
[2025-10-13 01:44:44] 2025-10-13 05:29:44,879 | INFO     | current chi2=14.298344580069159 (change=18.804126559985193 %)
[2025-10-13 01:44:44] 2025-10-13 05:29:44,879 | INFO     | right removable region: 1489
[2025-10-13 01:44:44] 2025-10-13 05:29:44,882 | INFO     | sum of square deviations: 1025703899420.8032
[2025-10-13 01:44:44] 2025-10-13 05:29:44,989 | INFO     | sum of deviations: 1939596616714.2847
[2025-10-13 01:44:44] 2025-10-13 05:29:44,989 | INFO     | mean x: 1760287777.0590603
[2025-10-13 01:44:44] 2025-10-13 05:29:44,989 | INFO     | mean y: 2097866.5308724833
[2025-10-13 01:44:44] 2025-10-13 05:29:44,989 | INFO     | -- intersect: -3326590089.8620276
[2025-10-13 01:44:44] 2025-10-13 05:29:45,041 | INFO     | intersect: -3326590089.8620276
[2025-10-13 01:44:44] 2025-10-13 05:29:45,043 | INFO     | chi2: 13.518783600771409
[2025-10-13 01:44:44] 2025-10-13 05:29:45,044 | INFO     | current chi2=13.518783600771409 (change=23.23101208224808 %)
[2025-10-13 01:44:44] 2025-10-13 05:29:45,044 | INFO     | left removable region: 10
[2025-10-13 01:44:44] 2025-10-13 05:29:45,050 | INFO     | sum of square deviations: 1003153889878.3341
[2025-10-13 01:44:44] 2025-10-13 05:29:45,105 | INFO     | sum of deviations: 2103093024689.64
[2025-10-13 01:44:44] 2025-10-13 05:29:45,106 | INFO     | mean x: 1760287746.560514
[2025-10-13 01:44:44] 2025-10-13 05:29:45,106 | INFO     | mean y: 2109423.579445571
[2025-10-13 01:44:44] 2025-10-13 05:29:45,106 | INFO     | -- intersect: -3688300311.7474627
[2025-10-13 01:44:44] 2025-10-13 05:29:45,106 | INFO     | intersect: -3688300311.7474627
[2025-10-13 01:44:44] 2025-10-13 05:29:45,108 | INFO     | chi2: 7.3076242462142105
[2025-10-13 01:44:44] 2025-10-13 05:29:45,108 | INFO     | -- intersect: -3688300311.7474627
[2025-10-13 01:44:44] 2025-10-13 05:29:45,109 | INFO     | current memory leak: 2.10 B/s (using 1479 data points, chi2=7.31)
[2025-10-13 01:44:44] 2025-10-13 05:29:45,110 | INFO     | could have reported an average CPU frequency of 2600 MHz (53 samples)
[2025-10-13 01:44:44] 2025-10-13 05:29:45,110 | INFO     | ..............................
[2025-10-13 01:44:44] 2025-10-13 05:29:45,111 | INFO     | . Timing measurements:
[2025-10-13 01:44:44] 2025-10-13 05:29:45,111 | INFO     | . get job = 2 s
[2025-10-13 01:44:44] 2025-10-13 05:29:45,111 | INFO     | . initial setup = 13 s
[2025-10-13 01:44:44] 2025-10-13 05:29:45,111 | INFO     | . payload setup = 82 s
[2025-10-13 01:44:44] 2025-10-13 05:29:45,111 | INFO     | . stage-in = 2 s
[2025-10-13 01:44:44] 2025-10-13 05:29:45,111 | INFO     | . payload execution = 91237 s
[2025-10-13 01:44:44] 2025-10-13 05:29:45,111 | INFO     | . stage-out = 80 s
[2025-10-13 01:44:44] 2025-10-13 05:29:45,111 | INFO     | . log creation = 61 s
[2025-10-13 01:44:44] 2025-10-13 05:29:45,111 | INFO     | ..............................
[2025-10-13 01:44:44] 2025-10-13 05:29:45,152 | INFO     | time since job start (91618s) is within the limit (172800.0s)
[2025-10-13 01:44:44] 2025-10-13 05:29:45,378 | INFO     | 
[2025-10-13 01:44:44] 2025-10-13 05:29:45,378 | INFO     | job summary report
[2025-10-13 01:44:44] 2025-10-13 05:29:45,378 | INFO     | --------------------------------------------------
[2025-10-13 01:44:44] 2025-10-13 05:29:45,379 | INFO     | PanDA job id: 6838912955
[2025-10-13 01:44:44] 2025-10-13 05:29:45,379 | INFO     | task id: 46676269
[2025-10-13 01:44:44] 2025-10-13 05:29:45,379 | INFO     | errors: (none)
[2025-10-13 01:44:44] 2025-10-13 05:29:45,379 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 01:44:44] 2025-10-13 05:29:45,379 | INFO     | pilot state: finished 
[2025-10-13 01:44:44] 2025-10-13 05:29:45,379 | INFO     | transexitcode: 0
[2025-10-13 01:44:44] 2025-10-13 05:29:45,379 | INFO     | exeerrorcode: 0
[2025-10-13 01:44:44] 2025-10-13 05:29:45,379 | INFO     | exeerrordiag: 
[2025-10-13 01:44:44] 2025-10-13 05:29:45,379 | INFO     | exitcode: 0
[2025-10-13 01:44:44] 2025-10-13 05:29:45,380 | INFO     | exitmsg: OK
[2025-10-13 01:44:44] 2025-10-13 05:29:45,380 | INFO     | cpuconsumptiontime: 50130 s
[2025-10-13 01:44:44] 2025-10-13 05:29:45,380 | INFO     | nevents: 400
[2025-10-13 01:44:44] 2025-10-13 05:29:45,380 | INFO     | neventsw: 0
[2025-10-13 01:44:44] 2025-10-13 05:29:45,380 | INFO     | pid: 159263
[2025-10-13 01:44:44] 2025-10-13 05:29:45,380 | INFO     | pgrp: 159263
[2025-10-13 01:44:44] 2025-10-13 05:29:45,380 | INFO     | corecount: 9
[2025-10-13 01:44:44] 2025-10-13 05:29:45,380 | INFO     | event service: False
[2025-10-13 01:44:44] 2025-10-13 05:29:45,381 | INFO     | sizes: {0: 2347926, 1: 2348527, 3: 2348611, 4: 2348639, 5: 2348667, 6: 2349022, 7: 2349050, 19: 2349078, 30: 2349106, 41: 2349134, 54: 2349162, 66: 2349470, 71: 23
[2025-10-13 01:44:44] 2025-10-13 05:29:45,381 | INFO     | --------------------------------------------------
[2025-10-13 01:44:44] 2025-10-13 05:29:45,381 | INFO     | 
[2025-10-13 01:44:44] 2025-10-13 05:29:45,381 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-13 01:44:44] 2025-10-13 05:29:45,507 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 01:44:44] 2025-10-13 05:29:45,507 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 01:44:44] 2025-10-13 05:29:45,508 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 01:44:44] 2025-10-13 05:29:45,508 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 01:44:44] 2025-10-13 05:29:45,508 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 01:44:44] 2025-10-13 05:29:45,508 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 01:44:44] 2025-10-13 05:29:45,508 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 01:44:44] 2025-10-13 05:29:45,508 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 01:44:44] 2025-10-13 05:29:45,508 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 01:44:44] 2025-10-13 05:29:45,508 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 01:44:44] 2025-10-13 05:29:45,508 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:44:44] 2025-10-13 05:29:45,509 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:44:44] 2025-10-13 05:29:45,509 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:44:44] 2025-10-13 05:29:45,509 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:44:44] 2025-10-13 05:29:45,509 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:44:44] 2025-10-13 05:29:45,509 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:44:44] 2025-10-13 05:29:45,509 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:44:44] 2025-10-13 05:29:45,509 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:44:44] 2025-10-13 05:29:45,509 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:44:44] 2025-10-13 05:29:45,509 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:44:44] 2025-10-13 05:29:45,510 | INFO     | job 6838912955 has completed (purged errors)
[2025-10-13 01:44:44] 2025-10-13 05:29:45,510 | INFO     | overall cleanup function is called
[2025-10-13 01:44:44] 2025-10-13 05:29:46,526 | INFO     | --- collectZombieJob: --- 10, [159263]
[2025-10-13 01:44:44] 2025-10-13 05:29:46,526 | INFO     | zombie collector waiting for pid 159263
[2025-10-13 01:44:44] 2025-10-13 05:29:46,526 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:44:44] 2025-10-13 05:29:46,526 | INFO     | collected zombie processes
[2025-10-13 01:44:44] 2025-10-13 05:29:46,526 | INFO     | will attempt to kill all subprocesses of pid=159263
[2025-10-13 01:44:44] 2025-10-13 05:29:51,730 | INFO     | process IDs to be killed: [159263] (in reverse order)
[2025-10-13 01:44:44] 2025-10-13 05:29:53,488 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:44:44] 2025-10-13 05:29:53,488 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:44:44] 2025-10-13 05:29:53,715 | INFO     | did not find any defunct processes belonging to 159263
[2025-10-13 01:44:44] 2025-10-13 05:29:53,917 | INFO     | did not find any defunct processes belonging to 159263
[2025-10-13 01:44:44] 2025-10-13 05:29:53,918 | INFO     | ready for new job
[2025-10-13 01:44:44] 2025-10-13 05:29:53,918 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:44:44] 2025-10-13 05:29:53,993 | INFO     | ***************************************
[2025-10-13 01:44:44] 2025-10-13 05:29:53,993 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:44:44] 2025-10-13 05:29:53,993 | INFO     | ***************************************
[2025-10-13 01:44:44] 2025-10-13 05:29:53,993 | INFO     | 
[2025-10-13 01:44:44] 2025-10-13 05:29:53,995 | INFO     | architecture information:
[2025-10-13 01:44:44] 2025-10-13 05:29:54,058 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:44:44] 2025-10-13 05:29:54,312 | INFO     | cat /etc/os-release:
[2025-10-13 01:44:44] NAME="CentOS Linux"
[2025-10-13 01:44:44] VERSION="7 (Core)"
[2025-10-13 01:44:44] ID="centos"
[2025-10-13 01:44:44] ID_LIKE="rhel fedora"
[2025-10-13 01:44:44] VERSION_ID="7"
[2025-10-13 01:44:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:44:44] ANSI_COLOR="0;31"
[2025-10-13 01:44:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:44:44] HOME_URL="https://www.centos.org/"
[2025-10-13 01:44:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:44:44] 
[2025-10-13 01:44:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:44:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:44:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:44:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:44:44] 
[2025-10-13 01:44:44] 2025-10-13 05:29:54,325 | INFO     | ***************************************
[2025-10-13 01:44:44] 2025-10-13 05:29:54,828 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-13 01:44:44] 2025-10-13 05:29:54,922 | INFO     | sufficient remaining disk space (74457284608 B)
[2025-10-13 01:44:44] 2025-10-13 05:29:54,923 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:44:44] 2025-10-13 05:29:54,923 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:44:44] 2025-10-13 05:29:54,923 | INFO     | update_server=False
[2025-10-13 01:44:44] 2025-10-13 05:29:54,923 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:44:44] 2025-10-13 05:29:54,923 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:44:44] 2025-10-13 05:29:54,923 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:44:44] 2025-10-13 05:29:55,124 | INFO     | all data control threads have been joined
[2025-10-13 01:44:44] 2025-10-13 05:29:55,252 | INFO     | all payload control threads have been joined
[2025-10-13 01:44:44] 2025-10-13 05:29:55,395 | INFO     | all job control threads have been joined
[2025-10-13 01:44:44] 2025-10-13 05:29:55,637 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:44:44] 2025-10-13 05:29:55,637 | INFO     | aborting loop
[2025-10-13 01:44:44] 2025-10-13 05:29:55,930 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:44:44] 2025-10-13 05:29:55,930 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:44:44] 2025-10-13 05:29:56,130 | INFO     | [data] control thread has finished
[2025-10-13 01:44:44] 2025-10-13 05:29:56,298 | INFO     | [payload] control thread has finished
[2025-10-13 01:44:44] 2025-10-13 05:29:56,318 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:44:44] 2025-10-13 05:29:56,401 | INFO     | [job] control thread has finished
[2025-10-13 01:44:44] 2025-10-13 05:29:56,468 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:44:44] 2025-10-13 05:29:56,572 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:44:44] 2025-10-13 05:29:56,643 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:44:44] 2025-10-13 05:29:56,932 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:44:44] 2025-10-13 05:29:57,226 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:44:44] 2025-10-13 05:29:57,260 | INFO     | [job] validate thread has finished
[2025-10-13 01:44:44] 2025-10-13 05:29:57,273 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:44:44] 2025-10-13 05:29:57,300 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:44:44] 2025-10-13 05:29:57,304 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:44:44] 2025-10-13 05:29:57,520 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:44:44] 2025-10-13 05:30:01,354 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:44:44] 2025-10-13 05:30:24,469 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:44:44] 2025-10-13 05:30:24,557 | INFO     | PID=121575 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 01:44:44] 2025-10-13 05:30:24,557 | INFO     | .. there are 32 such processes running
[2025-10-13 01:44:44] 2025-10-13 05:30:24,557 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:44:44] 2025-10-13 05:30:24,557 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:44:44] 2025-10-13 05:30:24,557 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:44:44] 2025-10-13 05:30:25,213 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140555669329728)>', '<ExcThread(monitor, started 140554952242944)>']
[2025-10-13 01:44:44] 2025-10-13 05:30:25,563 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:44:44] 2025-10-13 05:30:25,563 | INFO     | [monitor] control thread has ended
[2025-10-13 01:44:44] 2025-10-13 05:30:30,239 | INFO     | all workflow threads have been joined
[2025-10-13 01:44:44] 2025-10-13 05:30:30,239 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:44:44] 2025-10-13 05:30:30,239 | INFO     | traces error code: 0
[2025-10-13 01:44:44] 2025-10-13 05:30:30,240 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:44:44] 2025-10-13 05:30:32,382 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:44:44] 2025-10-13 05:30:32,385 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:44:44] 2025-10-13 05:30:32,387 [wrapper] pilotpid: 121575
[2025-10-13 01:44:44] 2025-10-13 05:30:32,390 [wrapper] Pilot exit status: 0
[2025-10-13 01:44:44] 2025-10-13 05:30:32,684 [wrapper] pandaids: 6838912955
[2025-10-13 01:44:44] 2025-10-13 05:30:33,099 [wrapper] cleanup supervisor_pilot  856163 121576
[2025-10-13 01:44:44] 2025-10-13 05:30:33,154 [wrapper] Test setup, not cleaning
[2025-10-13 01:44:44] 2025-10-13 05:30:33,197 [wrapper] apfmon messages muted
[2025-10-13 01:44:44] 2025-10-13 05:30:33,264 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:44:44] 2025-10-13 05:30:33,293 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:44:44]  *** Error codes and diagnostics ***
[2025-10-13 01:44:44]     "exeErrorCode": 0,
[2025-10-13 01:44:44]     "exeErrorDiag": "",
[2025-10-13 01:44:44]     "pilotErrorCode": 0,
[2025-10-13 01:44:44]     "pilotErrorDiag": "",
[2025-10-13 01:44:44]  *** Listing of results directory ***
[2025-10-13 01:44:44] total 425832
[2025-10-13 01:44:44] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 16:36 pilot3.tar.gz
[2025-10-13 01:44:44] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 16:48 queuedata.json
[2025-10-13 01:44:44] -rwx------. 1 boincer umatlas     36292 Oct 11 16:49 runpilot2-wrapper.sh
[2025-10-13 01:44:44] -rw-r--r--. 1 boincer umatlas       100 Oct 12 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:44:44] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 00:00 run_atlas
[2025-10-13 01:44:44] -rw-r--r--. 1 boincer umatlas       105 Oct 12 00:00 job.xml
[2025-10-13 01:44:44] -rw-r--r--. 2 boincer umatlas 219812191 Oct 12 00:00 EVNT.46676267._001255.pool.root.1
[2025-10-13 01:44:44] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 00:00 start_atlas.sh
[2025-10-13 01:44:44] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 00:00 shared
[2025-10-13 01:44:44] -rw-r--r--. 2 boincer umatlas    569688 Oct 12 00:00 input.tar.gz
[2025-10-13 01:44:44] -rw-r--r--. 1 boincer umatlas         0 Oct 12 00:00 boinc_lockfile
[2025-10-13 01:44:44] -rw-r--r--. 1 boincer umatlas      2548 Oct 12 00:00 pandaJob.out
[2025-10-13 01:44:44] -rw-------. 1 boincer umatlas    975512 Oct 12 00:02 agis_schedconf.cvmfs.json
[2025-10-13 01:44:44] drwx------. 5 boincer umatlas      4096 Oct 12 00:02 pilot3
[2025-10-13 01:44:44] -rw-------. 1 boincer umatlas 192818368 Oct 13 01:20 HITS.46676269._064785.pool.root.1
[2025-10-13 01:44:44] -rw-r--r--. 1 boincer umatlas       531 Oct 13 01:21 boinc_task_state.xml
[2025-10-13 01:44:44] -rw-------. 1 boincer umatlas      1046 Oct 13 01:27 memory_monitor_summary.json
[2025-10-13 01:44:44] -rw-------. 1 boincer umatlas   1560580 Oct 13 01:27 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:44:44] -rw-------. 1 boincer umatlas   1236349 Oct 13 01:28 log.46676269._064785.job.log.tgz.1
[2025-10-13 01:44:44] -rw-------. 1 boincer umatlas      7833 Oct 13 01:29 heartbeat.json
[2025-10-13 01:44:44] -rw-------. 1 boincer umatlas        95 Oct 13 01:29 pilot_heartbeat.json
[2025-10-13 01:44:44] -rw-------. 1 boincer umatlas      4823 Oct 13 01:30 pilotlog.txt
[2025-10-13 01:44:44] -rw-------. 1 boincer umatlas   8519957 Oct 13 01:30 log.46676269._064785.job.log.1
[2025-10-13 01:44:44] -rw-------. 1 boincer umatlas       357 Oct 13 01:30 output.list
[2025-10-13 01:44:44] -rw-r--r--. 1 boincer umatlas       620 Oct 13 01:30 runtime_log
[2025-10-13 01:44:44] -rw-------. 1 boincer umatlas   9779200 Oct 13 01:30 result.tar.gz
[2025-10-13 01:44:44] -rw-------. 1 boincer umatlas       659 Oct 13 01:30 WEjKDmrhvR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVahNDmG3DFTm.diag
[2025-10-13 01:44:44] -rw-r--r--. 1 boincer umatlas      8694 Oct 13 01:30 runtime_log.err
[2025-10-13 01:44:44] -rw-r--r--. 1 boincer umatlas      6658 Oct 13 01:36 init_data.xml
[2025-10-13 01:44:44] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 01:44 boinc_mmap_file
[2025-10-13 01:44:44] -rw-r--r--. 1 boincer umatlas        28 Oct 13 01:44 wrapper_checkpoint.txt
[2025-10-13 01:44:44] -rw-r--r--. 1 boincer umatlas     21594 Oct 13 01:44 stderr.txt
[2025-10-13 01:44:44] HITS file was successfully produced:
[2025-10-13 01:44:44] -rw-------. 1 boincer umatlas 192818368 Oct 13 01:20 shared/HITS.pool.root.1
[2025-10-13 01:44:44]  *** Contents of shared directory: ***
[2025-10-13 01:44:44] total 413096
[2025-10-13 01:44:44] -rw-r--r--. 2 boincer umatlas 219812191 Oct 12 00:00 ATLAS.root_0
[2025-10-13 01:44:44] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 00:00 start_atlas.sh
[2025-10-13 01:44:44] -rw-r--r--. 2 boincer umatlas    569688 Oct 12 00:00 input.tar.gz
[2025-10-13 01:44:44] -rw-------. 1 boincer umatlas 192818368 Oct 13 01:20 HITS.pool.root.1
[2025-10-13 01:44:44] -rw-------. 1 boincer umatlas   9779200 Oct 13 01:30 result.tar.gz
01:45:27 (108120): run_atlas exited; CPU time 53402.112509
01:45:27 (108120): called boinc_finish(0)

</stderr_txt>
]]>

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