Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:17:45 (17551): wrapper (7.7.26015): starting
22:17:45 (17551): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 22:17:45] Arguments: --nthreads 12
[2025-10-11 22:17:45] Threads: 12
[2025-10-11 22:17:45] Checking for CVMFS
[2025-10-11 22:17:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 22:17:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 22:17:45] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 22:17:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 22:17:45] 2.11.2.0 2987 222225 97248 151604 0 56 13848484 20275200 1 130560 1 107844108 99.984 13372035 12216 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 22:17:45] CVMFS is ok
[2025-10-11 22:17:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 22:17:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 22:17:45] Further information can be found at the LHC@home message board.
[2025-10-11 22:17:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 22:17:45] Checking for apptainer binary...
[2025-10-11 22:17:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 22:17:45] Running /usr/bin/apptainer --version
[2025-10-11 22:17:45] apptainer version 1.3.2-1.el7
[2025-10-11 22:17:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 22:17:47] c-205-19.aglt2.org
[2025-10-11 22:17:47] apptainer works
[2025-10-11 22:17:47] Set ATHENA_PROC_NUMBER=12
[2025-10-11 22:17:47] Set ATHENA_CORE_NUMBER=12
[2025-10-11 22:17:47] Starting ATLAS job with PandaID=6838773110
[2025-10-11 22:17:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 23:30:13]  *** The last 200 lines of the pilot log: ***
[2025-10-11 23:30:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-11 23:30:13]  replicas=None
[2025-10-11 23:30:13]  scope=mc23_13p6TeV
[2025-10-11 23:30:13]  status=None
[2025-10-11 23:30:13]  status_code=0
[2025-10-11 23:30:13]  storage_token=
[2025-10-11 23:30:13]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6838773110/log.46676269._062540.job.log.tgz.1
[2025-10-11 23:30:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/02/log.46676269._062540.job.log.tgz.1
[2025-10-11 23:30:13]  workdir=None
[2025-10-11 23:30:13] ]
[2025-10-11 23:30:13] 2025-10-12 03:29:23,756 | INFO     | transferring file log.46676269._062540.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6838773110/log.46676269._062540.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 23:30:13] 2025-10-12 03:29:23,756 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6838773110/log.46676269._062540.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._062540.job
[2025-10-11 23:30:13] 2025-10-12 03:29:23,779 | INFO     | adding to output.list: log.46676269._062540.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/02/log.46676269._062540.job.log.tg
[2025-10-11 23:30:13] 2025-10-12 03:29:23,780 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 23:30:13] 2025-10-12 03:29:23,780 | INFO     | summary of transferred files:
[2025-10-11 23:30:13] 2025-10-12 03:29:23,780 | INFO     |  -- lfn=log.46676269._062540.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 23:30:13] 2025-10-12 03:29:23,780 | INFO     | stage-out finished correctly
[2025-10-11 23:30:13] 2025-10-12 03:29:24,185 | INFO     | time since job start (4282s) is within the limit (172800.0s)
[2025-10-11 23:30:13] 2025-10-12 03:29:24,252 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 23:30:13] 2025-10-12 03:29:24,333 | INFO     | job 6838773110 has state=finished
[2025-10-11 23:30:13] 2025-10-12 03:29:24,333 | INFO     | preparing for final server update for job 6838773110 in state='finished'
[2025-10-11 23:30:13] 2025-10-12 03:29:24,334 | INFO     | this job has now completed (state=finished)
[2025-10-11 23:30:13] 2025-10-12 03:29:24,334 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 23:30:13] 2025-10-12 03:29:24,334 | INFO     | log transfer has been attempted: DONE
[2025-10-11 23:30:13] 2025-10-12 03:29:24,334 | INFO     | job 6838773110 has finished - writing final server update
[2025-10-11 23:30:13] 2025-10-12 03:29:24,335 | INFO     | total number of processed events: 400 (read)
[2025-10-11 23:30:13] 2025-10-12 03:29:24,336 | INFO     | executing command: lscpu
[2025-10-11 23:30:13] 2025-10-12 03:29:24,360 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 23:30:13] 2025-10-12 03:29:25,302 | INFO     | PID=21223 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 23:30:13] 2025-10-12 03:29:25,612 | INFO     | monitor loop #319: job 0:6838773110 is in state 'finished'
[2025-10-11 23:30:13] 2025-10-12 03:29:25,612 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 23:30:13] 2025-10-12 03:29:26,303 | INFO     | time since job start (4284s) is within the limit (172800.0s)
[2025-10-11 23:30:13] 2025-10-12 03:29:28,115 | INFO     | monitor loop #320: job 0:6838773110 is in state 'finished'
[2025-10-11 23:30:13] 2025-10-12 03:29:28,115 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 23:30:13] 2025-10-12 03:29:28,308 | INFO     | time since job start (4286s) is within the limit (172800.0s)
[2025-10-11 23:30:13] 2025-10-12 03:29:30,239 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-11 23:30:13] 2025-10-12 03:29:30,243 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-11 23:30:13] 2025-10-12 03:29:30,246 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838773110/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 23:30:13] 2025-10-12 03:29:30,246 | INFO     | extracted standard info from prmon json
[2025-10-11 23:30:13] 2025-10-12 03:29:30,247 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 23:30:13] 2025-10-12 03:29:30,247 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 23:30:13] 2025-10-12 03:29:30,247 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 23:30:13] 2025-10-12 03:29:30,247 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 23:30:13] 2025-10-12 03:29:30,249 | INFO     | fitting pss+swap vs Time
[2025-10-11 23:30:13] 2025-10-12 03:29:30,249 | INFO     | sum of square deviations: 77515872.0
[2025-10-11 23:30:13] 2025-10-12 03:29:30,249 | INFO     | sum of deviations: -1768204804.0000002
[2025-10-11 23:30:13] 2025-10-12 03:29:30,249 | INFO     | mean x: 1760237707.0
[2025-10-11 23:30:13] 2025-10-12 03:29:30,249 | INFO     | mean y: 2944592.111111111
[2025-10-11 23:30:13] 2025-10-12 03:29:30,250 | INFO     | -- intersect: 40155505472.79559
[2025-10-11 23:30:13] 2025-10-12 03:29:30,250 | INFO     | intersect: 40155505472.79559
[2025-10-11 23:30:13] 2025-10-12 03:29:30,250 | INFO     | chi2: 0.041765138946526774
[2025-10-11 23:30:13] 2025-10-12 03:29:30,250 | INFO     | -- intersect: 40155505472.79559
[2025-10-11 23:30:13] 2025-10-12 03:29:30,250 | INFO     | current memory leak: -22.81 B/s (using 63 data points, chi2=0.04)
[2025-10-11 23:30:13] 2025-10-12 03:29:30,250 | INFO     | could have reported an average CPU frequency of 2034 MHz (6 samples)
[2025-10-11 23:30:13] 2025-10-12 03:29:30,251 | INFO     | ..............................
[2025-10-11 23:30:13] 2025-10-12 03:29:30,251 | INFO     | . Timing measurements:
[2025-10-11 23:30:13] 2025-10-12 03:29:30,251 | INFO     | . get job = 0 s
[2025-10-11 23:30:13] 2025-10-12 03:29:30,251 | INFO     | . initial setup = 2 s
[2025-10-11 23:30:13] 2025-10-12 03:29:30,251 | INFO     | . payload setup = 7 s
[2025-10-11 23:30:13] 2025-10-12 03:29:30,251 | INFO     | . stage-in = 0 s
[2025-10-11 23:30:13] 2025-10-12 03:29:30,251 | INFO     | . payload execution = 4254 s
[2025-10-11 23:30:13] 2025-10-12 03:29:30,251 | INFO     | . stage-out = 0 s
[2025-10-11 23:30:13] 2025-10-12 03:29:30,251 | INFO     | . log creation = 0 s
[2025-10-11 23:30:13] 2025-10-12 03:29:30,251 | INFO     | ..............................
[2025-10-11 23:30:13] 2025-10-12 03:29:30,318 | INFO     | time since job start (4288s) is within the limit (172800.0s)
[2025-10-11 23:30:13] 2025-10-12 03:29:30,651 | INFO     | 
[2025-10-11 23:30:13] 2025-10-12 03:29:30,652 | INFO     | job summary report
[2025-10-11 23:30:13] 2025-10-12 03:29:30,652 | INFO     | --------------------------------------------------
[2025-10-11 23:30:13] 2025-10-12 03:29:30,652 | INFO     | PanDA job id: 6838773110
[2025-10-11 23:30:13] 2025-10-12 03:29:30,652 | INFO     | task id: 46676269
[2025-10-11 23:30:13] 2025-10-12 03:29:30,652 | INFO     | errors: (none)
[2025-10-11 23:30:13] 2025-10-12 03:29:30,652 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 23:30:13] 2025-10-12 03:29:30,652 | INFO     | pilot state: finished 
[2025-10-11 23:30:13] 2025-10-12 03:29:30,652 | INFO     | transexitcode: 0
[2025-10-11 23:30:13] 2025-10-12 03:29:30,652 | INFO     | exeerrorcode: 0
[2025-10-11 23:30:13] 2025-10-12 03:29:30,653 | INFO     | exeerrordiag: 
[2025-10-11 23:30:13] 2025-10-12 03:29:30,653 | INFO     | exitcode: 0
[2025-10-11 23:30:13] 2025-10-12 03:29:30,653 | INFO     | exitmsg: OK
[2025-10-11 23:30:13] 2025-10-12 03:29:30,653 | INFO     | cpuconsumptiontime: 46697 s
[2025-10-11 23:30:13] 2025-10-12 03:29:30,653 | INFO     | nevents: 400
[2025-10-11 23:30:13] 2025-10-12 03:29:30,653 | INFO     | neventsw: 0
[2025-10-11 23:30:13] 2025-10-12 03:29:30,653 | INFO     | pid: 28521
[2025-10-11 23:30:13] 2025-10-12 03:29:30,653 | INFO     | pgrp: 28521
[2025-10-11 23:30:13] 2025-10-12 03:29:30,653 | INFO     | corecount: 12
[2025-10-11 23:30:13] 2025-10-12 03:29:30,654 | INFO     | event service: False
[2025-10-11 23:30:13] 2025-10-12 03:29:30,654 | INFO     | sizes: {0: 2348686, 1: 2348885, 6: 2349147, 12: 2349175, 4265: 2375196, 4266: 2384378, 4272: 2384516}
[2025-10-11 23:30:13] 2025-10-12 03:29:30,654 | INFO     | --------------------------------------------------
[2025-10-11 23:30:13] 2025-10-12 03:29:30,654 | INFO     | 
[2025-10-11 23:30:13] 2025-10-12 03:29:30,654 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 23:30:13] 2025-10-12 03:29:30,677 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 23:30:13] 2025-10-12 03:29:30,678 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 23:30:13] 2025-10-12 03:29:30,678 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 23:30:13] 2025-10-12 03:29:30,678 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 23:30:13] 2025-10-12 03:29:30,678 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 23:30:13] 2025-10-12 03:29:30,678 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 23:30:13] 2025-10-12 03:29:30,678 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 23:30:13] 2025-10-12 03:29:30,679 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 23:30:13] 2025-10-12 03:29:30,679 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 23:30:13] 2025-10-12 03:29:30,679 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 23:30:13] 2025-10-12 03:29:30,679 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 23:30:13] 2025-10-12 03:29:30,679 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 23:30:13] 2025-10-12 03:29:30,679 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 23:30:13] 2025-10-12 03:29:30,680 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 23:30:13] 2025-10-12 03:29:30,680 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 23:30:13] 2025-10-12 03:29:30,680 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 23:30:13] 2025-10-12 03:29:30,680 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 23:30:13] 2025-10-12 03:29:30,680 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 23:30:13] 2025-10-12 03:29:30,680 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 23:30:13] 2025-10-12 03:29:30,681 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 23:30:13] 2025-10-12 03:29:30,681 | INFO     | job 6838773110 has completed (purged errors)
[2025-10-11 23:30:13] 2025-10-12 03:29:30,681 | INFO     | overall cleanup function is called
[2025-10-11 23:30:13] 2025-10-12 03:29:31,689 | INFO     | --- collectZombieJob: --- 10, [28521]
[2025-10-11 23:30:13] 2025-10-12 03:29:31,689 | INFO     | zombie collector waiting for pid 28521
[2025-10-11 23:30:13] 2025-10-12 03:29:31,690 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 23:30:13] 2025-10-12 03:29:31,690 | INFO     | collected zombie processes
[2025-10-11 23:30:13] 2025-10-12 03:29:31,690 | INFO     | will attempt to kill all subprocesses of pid=28521
[2025-10-11 23:30:13] 2025-10-12 03:29:31,783 | INFO     | process IDs to be killed: [28521] (in reverse order)
[2025-10-11 23:30:13] 2025-10-12 03:29:31,837 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 23:30:13] 2025-10-12 03:29:31,838 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 23:30:13] 2025-10-12 03:29:31,841 | INFO     | did not find any defunct processes belonging to 28521
[2025-10-11 23:30:13] 2025-10-12 03:29:31,845 | INFO     | did not find any defunct processes belonging to 28521
[2025-10-11 23:30:13] 2025-10-12 03:29:31,845 | INFO     | ready for new job
[2025-10-11 23:30:13] 2025-10-12 03:29:31,846 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 23:30:13] 2025-10-12 03:29:31,847 | INFO     | ***************************************
[2025-10-11 23:30:13] 2025-10-12 03:29:31,847 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 23:30:13] 2025-10-12 03:29:31,847 | INFO     | ***************************************
[2025-10-11 23:30:13] 2025-10-12 03:29:31,847 | INFO     | 
[2025-10-11 23:30:13] 2025-10-12 03:29:31,848 | INFO     | architecture information:
[2025-10-11 23:30:13] 2025-10-12 03:29:31,848 | INFO     | executing command: cat /etc/os-release
[2025-10-11 23:30:13] 2025-10-12 03:29:31,863 | INFO     | cat /etc/os-release:
[2025-10-11 23:30:13] NAME="CentOS Linux"
[2025-10-11 23:30:13] VERSION="7 (Core)"
[2025-10-11 23:30:13] ID="centos"
[2025-10-11 23:30:13] ID_LIKE="rhel fedora"
[2025-10-11 23:30:13] VERSION_ID="7"
[2025-10-11 23:30:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 23:30:13] ANSI_COLOR="0;31"
[2025-10-11 23:30:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 23:30:13] HOME_URL="https://www.centos.org/"
[2025-10-11 23:30:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 23:30:13] 
[2025-10-11 23:30:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 23:30:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 23:30:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 23:30:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 23:30:13] 
[2025-10-11 23:30:13] 2025-10-12 03:29:31,864 | INFO     | ***************************************
[2025-10-11 23:30:13] 2025-10-12 03:29:32,367 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 23:30:13] 2025-10-12 03:29:32,383 | INFO     | sufficient remaining disk space (29360128000 B)
[2025-10-11 23:30:13] 2025-10-12 03:29:32,383 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 23:30:13] 2025-10-12 03:29:32,383 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 23:30:13] 2025-10-12 03:29:32,383 | INFO     | update_server=False
[2025-10-11 23:30:13] 2025-10-12 03:29:32,383 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 23:30:13] 2025-10-12 03:29:32,384 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 23:30:13] 2025-10-12 03:29:32,384 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:30:13] 2025-10-12 03:29:32,384 | INFO     | aborting loop
[2025-10-11 23:30:13] 2025-10-12 03:29:32,394 | INFO     | all payload control threads have been joined
[2025-10-11 23:30:13] 2025-10-12 03:29:32,746 | INFO     | all data control threads have been joined
[2025-10-11 23:30:13] 2025-10-12 03:29:33,389 | INFO     | [job] retrieve thread has finished
[2025-10-11 23:30:13] 2025-10-12 03:29:33,390 | INFO     | [job] job monitor thread has finished
[2025-10-11 23:30:13] 2025-10-12 03:29:33,399 | INFO     | [payload] control thread has finished
[2025-10-11 23:30:13] 2025-10-12 03:29:33,417 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 23:30:13] 2025-10-12 03:29:33,455 | INFO     | [payload] validate_post thread has finished
[2025-10-11 23:30:13] 2025-10-12 03:29:33,681 | INFO     | all job control threads have been joined
[2025-10-11 23:30:13] 2025-10-12 03:29:33,751 | INFO     | [data] control thread has finished
[2025-10-11 23:30:13] 2025-10-12 03:29:33,802 | INFO     | [data] copytool_in thread has finished
[2025-10-11 23:30:13] 2025-10-12 03:29:34,117 | INFO     | [payload] failed_post thread has finished
[2025-10-11 23:30:13] 2025-10-12 03:29:34,273 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 23:30:13] 2025-10-12 03:29:34,329 | INFO     | [job] validate thread has finished
[2025-10-11 23:30:13] 2025-10-12 03:29:34,390 | INFO     | [data] copytool_out thread has finished
[2025-10-11 23:30:13] 2025-10-12 03:29:34,686 | INFO     | [job] control thread has finished
[2025-10-11 23:30:13] 2025-10-12 03:29:34,828 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 23:30:13] 2025-10-12 03:29:34,839 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 23:30:13] 2025-10-12 03:29:35,344 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:30:13] 2025-10-12 03:29:36,350 | INFO     | [job] queue monitor thread has finished
[2025-10-11 23:30:13] 2025-10-12 03:29:38,845 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 23:30:13] 2025-10-12 03:29:43,403 | INFO     | job.realtimelogging is not enabled
[2025-10-11 23:30:13] 2025-10-12 03:29:44,409 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 23:30:13] 2025-10-12 03:30:03,524 | INFO     | PID=21223 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 23:30:13] 2025-10-12 03:30:03,525 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 23:30:13] 2025-10-12 03:30:03,525 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 23:30:13] 2025-10-12 03:30:03,525 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 23:30:13] 2025-10-12 03:30:08,378 | INFO     | [monitor] cgroup control has ended
[2025-10-11 23:30:13] 2025-10-12 03:30:08,508 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140374886836032)>', '<ExcThread(monitor, started 140374228072192)>']
[2025-10-11 23:30:13] 2025-10-12 03:30:08,550 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 23:30:13] 2025-10-12 03:30:08,551 | INFO     | [monitor] control thread has ended
[2025-10-11 23:30:13] 2025-10-12 03:30:13,510 | INFO     | all workflow threads have been joined
[2025-10-11 23:30:13] 2025-10-12 03:30:13,510 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 23:30:13] 2025-10-12 03:30:13,510 | INFO     | traces error code: 0
[2025-10-11 23:30:13] 2025-10-12 03:30:13,511 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 23:30:13] 2025-10-12 03:30:13,611 [wrapper] ==== pilot stdout END ====
[2025-10-11 23:30:13] 2025-10-12 03:30:13,614 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 23:30:13] 2025-10-12 03:30:13,618 [wrapper] pilotpid: 21223
[2025-10-11 23:30:13] 2025-10-12 03:30:13,622 [wrapper] Pilot exit status: 0
[2025-10-11 23:30:13] 2025-10-12 03:30:13,637 [wrapper] pandaids: 6838773110
[2025-10-11 23:30:13] 2025-10-12 03:30:13,677 [wrapper] cleanup supervisor_pilot  4640 21224
[2025-10-11 23:30:13] 2025-10-12 03:30:13,680 [wrapper] Test setup, not cleaning
[2025-10-11 23:30:13] 2025-10-12 03:30:13,684 [wrapper] apfmon messages muted
[2025-10-11 23:30:13] 2025-10-12 03:30:13,688 [wrapper] ==== wrapper stdout END ====
[2025-10-11 23:30:13] 2025-10-12 03:30:13,692 [wrapper] ==== wrapper stderr END ====
[2025-10-11 23:30:13]  *** Error codes and diagnostics ***
[2025-10-11 23:30:13]     "exeErrorCode": 0,
[2025-10-11 23:30:13]     "exeErrorDiag": "",
[2025-10-11 23:30:13]     "pilotErrorCode": 0,
[2025-10-11 23:30:13]     "pilotErrorDiag": "",
[2025-10-11 23:30:13]  *** Listing of results directory ***
[2025-10-11 23:30:13] total 413188
[2025-10-11 23:30:13] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 14:14 pilot3.tar.gz
[2025-10-11 23:30:13] -rwx------ 1 boincer umatlas     36292 Oct 11 14:24 runpilot2-wrapper.sh
[2025-10-11 23:30:13] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 14:24 queuedata.json
[2025-10-11 23:30:13] -rw-r--r-- 1 boincer umatlas       100 Oct 11 22:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 23:30:13] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 22:17 run_atlas
[2025-10-11 23:30:13] -rw-r--r-- 1 boincer umatlas       105 Oct 11 22:17 job.xml
[2025-10-11 23:30:13] -rw-r--r-- 2 boincer umatlas 225262344 Oct 11 22:17 EVNT.46676267._002512.pool.root.1
[2025-10-11 23:30:13] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 22:17 start_atlas.sh
[2025-10-11 23:30:13] drwxrwx--x 2 boincer umatlas      4096 Oct 11 22:17 shared
[2025-10-11 23:30:13] -rw-r--r-- 2 boincer umatlas    569681 Oct 11 22:17 input.tar.gz
[2025-10-11 23:30:13] -rw-r--r-- 1 boincer umatlas         0 Oct 11 22:17 boinc_lockfile
[2025-10-11 23:30:13] -rw-r--r-- 1 boincer umatlas      2550 Oct 11 22:17 pandaJob.out
[2025-10-11 23:30:13] -rw------- 1 boincer umatlas    975496 Oct 11 22:17 agis_schedconf.cvmfs.json
[2025-10-11 23:30:13] -rw------- 1 boincer umatlas   1560580 Oct 11 22:18 agis_ddmendpoints.agis.ALL.json
[2025-10-11 23:30:13] drwx------ 5 boincer umatlas      4096 Oct 11 22:18 pilot3
[2025-10-11 23:30:13] -rw-r--r-- 1 boincer umatlas      5952 Oct 11 23:19 init_data.xml
[2025-10-11 23:30:13] -rw------- 1 boincer umatlas 191923015 Oct 11 23:28 HITS.46676269._062540.pool.root.1
[2025-10-11 23:30:13] -rw-r--r-- 1 boincer umatlas       529 Oct 11 23:29 boinc_task_state.xml
[2025-10-11 23:30:13] -rw------- 1 boincer umatlas      1049 Oct 11 23:29 memory_monitor_summary.json
[2025-10-11 23:30:13] -rw------- 1 boincer umatlas    382625 Oct 11 23:29 log.46676269._062540.job.log.tgz.1
[2025-10-11 23:30:13] -rw------- 1 boincer umatlas      7855 Oct 11 23:29 heartbeat.json
[2025-10-11 23:30:13] -rw------- 1 boincer umatlas        95 Oct 11 23:30 pilot_heartbeat.json
[2025-10-11 23:30:13] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 23:30 boinc_mmap_file
[2025-10-11 23:30:13] -rw-r--r-- 1 boincer umatlas        27 Oct 11 23:30 wrapper_checkpoint.txt
[2025-10-11 23:30:13] -rw------- 1 boincer umatlas      4818 Oct 11 23:30 pilotlog.txt
[2025-10-11 23:30:13] -rw------- 1 boincer umatlas    625357 Oct 11 23:30 log.46676269._062540.job.log.1
[2025-10-11 23:30:13] -rw------- 1 boincer umatlas       357 Oct 11 23:30 output.list
[2025-10-11 23:30:13] -rw-r--r-- 1 boincer umatlas       620 Oct 11 23:30 runtime_log
[2025-10-11 23:30:13] -rw------- 1 boincer umatlas   1024000 Oct 11 23:30 result.tar.gz
[2025-10-11 23:30:13] -rw-r--r-- 1 boincer umatlas      8705 Oct 11 23:30 runtime_log.err
[2025-10-11 23:30:13] -rw------- 1 boincer umatlas       659 Oct 11 23:30 e4uNDmHRtR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhEhNDmVEseOn.diag
[2025-10-11 23:30:13] -rw-r--r-- 1 boincer umatlas     21934 Oct 11 23:30 stderr.txt
[2025-10-11 23:30:13] HITS file was successfully produced:
[2025-10-11 23:30:13] -rw------- 1 boincer umatlas 191923015 Oct 11 23:28 shared/HITS.pool.root.1
[2025-10-11 23:30:13]  *** Contents of shared directory: ***
[2025-10-11 23:30:13] total 408996
[2025-10-11 23:30:13] -rw-r--r-- 2 boincer umatlas 225262344 Oct 11 22:17 ATLAS.root_0
[2025-10-11 23:30:13] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 22:17 start_atlas.sh
[2025-10-11 23:30:13] -rw-r--r-- 2 boincer umatlas    569681 Oct 11 22:17 input.tar.gz
[2025-10-11 23:30:13] -rw------- 1 boincer umatlas 191923015 Oct 11 23:28 HITS.pool.root.1
[2025-10-11 23:30:13] -rw------- 1 boincer umatlas   1024000 Oct 11 23:30 result.tar.gz
23:30:15 (17551): run_atlas exited; CPU time 46668.766171
23:30:15 (17551): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN