Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:47:56 (2233834): wrapper (7.7.26015): starting
13:47:56 (2233834): wrapper: running run_atlas (--nthreads 2)
[2025-10-12 13:47:56] Arguments: --nthreads 2
[2025-10-12 13:47:56] Threads: 2
[2025-10-12 13:47:56] Checking for CVMFS
[2025-10-12 13:47:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 13:47:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 13:47:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 13:47:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 13:47:57] 2.9.2.0 1264658 4252 63064 151619 2 56 27350068 36864000 0 130560 0 2555591 99.988 147669 880 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 13:47:57] CVMFS is ok
[2025-10-12 13:47:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 13:47:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 13:47:57] Further information can be found at the LHC@home message board.
[2025-10-12 13:47:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 13:47:57] Checking for apptainer binary...
[2025-10-12 13:47:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 13:47:57] Running /usr/bin/apptainer --version
[2025-10-12 13:47:57] apptainer version 1.4.1-1.1
[2025-10-12 13:47:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 13:47:57] magicA252b
[2025-10-12 13:47:57] apptainer works
[2025-10-12 13:47:57] Set ATHENA_PROC_NUMBER=2
[2025-10-12 13:47:57] Set ATHENA_CORE_NUMBER=2
[2025-10-12 13:47:57] Starting ATLAS job with PandaID=6838852963
[2025-10-12 13:47:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 15:53:27]  *** The last 200 lines of the pilot log: ***
[2025-10-12 15:53:27] 2025-10-12 13:53:07,320 | INFO     | all data control threads have been joined
[2025-10-12 15:53:27] 2025-10-12 13:53:07,457 | INFO     | all job control threads have been joined
[2025-10-12 15:53:27] 2025-10-12 13:53:07,471 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 15:53:27] 2025-10-12 13:53:07,471 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 15:53:27] 2025-10-12 13:53:07,472 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:53:27] 2025-10-12 13:53:07,472 | INFO     | will abort loop
[2025-10-12 15:53:27] 2025-10-12 13:53:07,741 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 15:53:27] 2025-10-12 13:53:07,763 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 15:53:27] 2025-10-12 13:53:07,848 | INFO     | all payload control threads have been joined
[2025-10-12 15:53:27] 2025-10-12 13:53:07,976 | INFO     | [job] retrieve thread has finished
[2025-10-12 15:53:27] 2025-10-12 13:53:07,977 | INFO     | [job] queue monitor thread has finished
[2025-10-12 15:53:27] 2025-10-12 13:53:08,015 | INFO     | [payload] validate_post thread has finished
[2025-10-12 15:53:27] 2025-10-12 13:53:08,019 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 15:53:27] 2025-10-12 13:53:08,322 | INFO     | [data] control thread has finished
[2025-10-12 15:53:27] 2025-10-12 13:53:08,463 | INFO     | [job] control thread has finished
[2025-10-12 15:53:27] 2025-10-12 13:53:08,478 | INFO     | [job] job monitor thread has finished
[2025-10-12 15:53:27] 2025-10-12 13:53:08,787 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 15:53:27] 2025-10-12 13:53:08,818 | INFO     | [payload] failed_post thread has finished
[2025-10-12 15:53:27] 2025-10-12 13:53:08,854 | INFO     | [payload] control thread has finished
[2025-10-12 15:53:27] 2025-10-12 13:53:09,062 | INFO     | [data] copytool_in thread has finished
[2025-10-12 15:53:27] 2025-10-12 13:53:09,276 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 15:53:27] 2025-10-12 13:53:09,396 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 15:53:27] 2025-10-12 13:53:09,397 | INFO     | [job] validate thread has finished
[2025-10-12 15:53:27] 2025-10-12 13:53:09,747 | INFO     | [data] copytool_out thread has finished
[2025-10-12 15:53:27] 2025-10-12 13:53:11,770 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 15:53:27] 2025-10-12 13:53:20,750 | INFO     | [monitor] cgroup control has ended
[2025-10-12 15:53:27] 2025-10-12 13:53:22,810 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140682799441728)>', '<ExcThread(monitor, started 140682148685568)>']
[2025-10-12 15:53:27] 2025-10-12 13:53:23,056 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 15:53:27] 2025-10-12 13:53:23,057 | INFO     | [monitor] control thread has ended
[2025-10-12 15:53:27] 2025-10-12 13:53:27,835 | INFO     | all workflow threads have been joined
[2025-10-12 15:53:27] 2025-10-12 13:53:27,835 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 15:53:27] 2025-10-12 13:53:27,836 | INFO     | traces error code: 0
[2025-10-12 15:53:27] 2025-10-12 13:53:27,836 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 15:53:27] 2025-10-12 13:53:27,878 [wrapper] ==== pilot stdout END ====
[2025-10-12 15:53:27] 2025-10-12 13:53:27,880 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 15:53:27] 2025-10-12 13:53:27,882 [wrapper] pilotpid: 2237544
[2025-10-12 15:53:27] 2025-10-12 13:53:27,884 [wrapper] Pilot exit status: 0
[2025-10-12 15:53:27] 2025-10-12 13:53:27,890 [wrapper] pandaids: 6838852963
[2025-10-12 15:53:27] 2025-10-12 13:53:27,902 [wrapper] cleanup supervisor_pilot 2258731 2237545
[2025-10-12 15:53:27] 2025-10-12 13:53:27,904 [wrapper] Test setup, not cleaning
[2025-10-12 15:53:27] 2025-10-12 13:53:27,906 [wrapper] apfmon messages muted
[2025-10-12 15:53:27] 2025-10-12 13:53:27,908 [wrapper] ==== wrapper stdout END ====
[2025-10-12 15:53:27] 2025-10-12 13:53:27,910 [wrapper] ==== wrapper stderr END ====
[2025-10-12 15:53:27]  *** Error codes and diagnostics ***
[2025-10-12 15:53:27]     "exeErrorCode": 0,
[2025-10-12 15:53:27]     "exeErrorDiag": "",
[2025-10-12 15:53:27]     "pilotErrorCode": 0,
[2025-10-12 15:53:27]     "pilotErrorDiag": "",
[2025-10-12 15:53:27]  *** Listing of results directory ***
[2025-10-12 15:53:27] total 416056
[2025-10-12 15:53:27] -rw-r--r-- 1 boinc boinc    557409 Oct 11 22:36 pilot3.tar.gz
[2025-10-12 15:53:27] -rw-r--r-- 1 boinc boinc      5112 Oct 11 22:43 queuedata.json
[2025-10-12 15:53:27] -rwx------ 1 boinc boinc     36292 Oct 11 22:44 runpilot2-wrapper.sh
[2025-10-12 15:53:27] -rw-r--r-- 1 boinc boinc       100 Oct 12 13:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 15:53:27] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 13:47 run_atlas
[2025-10-12 15:53:27] -rw-r--r-- 1 boinc boinc       105 Oct 12 13:47 job.xml
[2025-10-12 15:53:27] -rw-r--r-- 2 boinc boinc 222366918 Oct 12 13:47 EVNT.46676267._002597.pool.root.1
[2025-10-12 15:53:27] -rw-r--r-- 2 boinc boinc    569681 Oct 12 13:47 input.tar.gz
[2025-10-12 15:53:27] -rw-r--r-- 2 boinc boinc     15120 Oct 12 13:47 start_atlas.sh
[2025-10-12 15:53:27] drwxrwx--x 2 boinc boinc      4096 Oct 12 13:47 shared
[2025-10-12 15:53:27] -rw-r--r-- 1 boinc boinc         0 Oct 12 13:47 boinc_setup_complete
[2025-10-12 15:53:27] -rw-r--r-- 1 boinc boinc      6209 Oct 12 13:47 init_data.xml
[2025-10-12 15:53:27] -rw-r--r-- 1 boinc boinc         0 Oct 12 13:47 boinc_lockfile
[2025-10-12 15:53:27] -rw-r--r-- 1 boinc boinc      2550 Oct 12 13:47 pandaJob.out
[2025-10-12 15:53:27] -rw------- 1 boinc boinc    975520 Oct 12 13:48 agis_schedconf.cvmfs.json
[2025-10-12 15:53:27] -rw------- 1 boinc boinc   1560580 Oct 12 13:48 agis_ddmendpoints.agis.ALL.json
[2025-10-12 15:53:27] drwx------ 5 boinc boinc      4096 Oct 12 13:48 pilot3
[2025-10-12 15:53:27] -rw------- 1 boinc boinc 197056521 Oct 12 15:52 HITS.46676269._064599.pool.root.1
[2025-10-12 15:53:27] -rw-r--r-- 1 boinc boinc       529 Oct 12 15:52 boinc_task_state.xml
[2025-10-12 15:53:27] -rw------- 1 boinc boinc        95 Oct 12 15:52 pilot_heartbeat.json
[2025-10-12 15:53:27] -rw------- 1 boinc boinc      1020 Oct 12 15:52 memory_monitor_summary.json
[2025-10-12 15:53:27] -rw------- 1 boinc boinc    281750 Oct 12 15:52 log.46676269._064599.job.log.tgz.1
[2025-10-12 15:53:27] -rw------- 1 boinc boinc      7767 Oct 12 15:53 heartbeat.json
[2025-10-12 15:53:27] -rw-r--r-- 1 boinc boinc      8192 Oct 12 15:53 boinc_mmap_file
[2025-10-12 15:53:27] -rw-r--r-- 1 boinc boinc        27 Oct 12 15:53 wrapper_checkpoint.txt
[2025-10-12 15:53:27] -rw------- 1 boinc boinc      4742 Oct 12 15:53 pilotlog.txt
[2025-10-12 15:53:27] -rw------- 1 boinc boinc   1084822 Oct 12 15:53 log.46676269._064599.job.log.1
[2025-10-12 15:53:27] -rw------- 1 boinc boinc       357 Oct 12 15:53 output.list
[2025-10-12 15:53:27] -rw-r--r-- 1 boinc boinc       620 Oct 12 15:53 runtime_log
[2025-10-12 15:53:27] -rw------- 1 boinc boinc   1382400 Oct 12 15:53 result.tar.gz
[2025-10-12 15:53:27] -rw------- 1 boinc boinc       663 Oct 12 15:53 skUMDmTdvR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmyYSMDmdbmKWn.diag
[2025-10-12 15:53:27] -rw-r--r-- 1 boinc boinc      8797 Oct 12 15:53 runtime_log.err
[2025-10-12 15:53:27] -rw-r--r-- 1 boinc boinc      6744 Oct 12 15:53 stderr.txt
[2025-10-12 15:53:27] HITS file was successfully produced:
[2025-10-12 15:53:27] -rw------- 1 boinc boinc 197056521 Oct 12 15:52 shared/HITS.pool.root.1
[2025-10-12 15:53:27]  *** Contents of shared directory: ***
[2025-10-12 15:53:27] total 411532
[2025-10-12 15:53:27] -rw-r--r-- 2 boinc boinc 222366918 Oct 12 13:47 ATLAS.root_0
[2025-10-12 15:53:27] -rw-r--r-- 2 boinc boinc    569681 Oct 12 13:47 input.tar.gz
[2025-10-12 15:53:27] -rw-r--r-- 2 boinc boinc     15120 Oct 12 13:47 start_atlas.sh
[2025-10-12 15:53:27] -rw------- 1 boinc boinc 197056521 Oct 12 15:52 HITS.pool.root.1
[2025-10-12 15:53:27] -rw------- 1 boinc boinc   1382400 Oct 12 15:53 result.tar.gz
15:53:29 (2233834): run_atlas exited; CPU time 14584.632954
15:53:29 (2233834): called boinc_finish(0)

</stderr_txt>
]]>

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