Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:04:17 (4528): wrapper (7.7.26015): starting
22:04:17 (4528): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 22:04:17] Arguments: --nthreads 8
[2025-10-11 22:04:17] Threads: 8
[2025-10-11 22:04:17] Checking for CVMFS
[2025-10-11 22:04:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 22:04:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 22:04:17] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 22:04:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 22:04:17] 2.11.2.0 1598 215579 124208 151602 2 188 19915649 20275201 917 130560 1 220054439 99.992 11680402 11158 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 22:04:17] CVMFS is ok
[2025-10-11 22:04:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 22:04:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 22:04:17] Further information can be found at the LHC@home message board.
[2025-10-11 22:04:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 22:04:17] Checking for apptainer binary...
[2025-10-11 22:04:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 22:04:17] Running /usr/bin/apptainer --version
[2025-10-11 22:04:17] apptainer version 1.3.2-1.el7
[2025-10-11 22:04:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 22:04:18] c-205-36.aglt2.org
[2025-10-11 22:04:18] apptainer works
[2025-10-11 22:04:18] Set ATHENA_PROC_NUMBER=8
[2025-10-11 22:04:18] Set ATHENA_CORE_NUMBER=8
[2025-10-11 22:04:18] Starting ATLAS job with PandaID=6838852959
[2025-10-11 22:04:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 23:10:51]  *** The last 200 lines of the pilot log: ***
[2025-10-11 23:10:51]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6838852959/log.46676269._064595.job.log.tgz.1
[2025-10-11 23:10:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d7/4b/log.46676269._064595.job.log.tgz.1
[2025-10-11 23:10:51]  workdir=None
[2025-10-11 23:10:51] ]
[2025-10-11 23:10:51] 2025-10-12 03:10:11,562 | INFO     | transferring file log.46676269._064595.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6838852959/log.46676269._064595.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 23:10:51] 2025-10-12 03:10:11,562 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6838852959/log.46676269._064595.job.log.tgz.1 /tmp/boinchome/slots/1/log.46676269._064595.job
[2025-10-11 23:10:51] 2025-10-12 03:10:11,569 | INFO     | time since job start (3940s) is within the limit (172800.0s)
[2025-10-11 23:10:51] 2025-10-12 03:10:11,579 | INFO     | adding to output.list: log.46676269._064595.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d7/4b/log.46676269._064595.job.log.tg
[2025-10-11 23:10:51] 2025-10-12 03:10:11,580 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 23:10:51] 2025-10-12 03:10:11,580 | INFO     | summary of transferred files:
[2025-10-11 23:10:51] 2025-10-12 03:10:11,580 | INFO     |  -- lfn=log.46676269._064595.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 23:10:51] 2025-10-12 03:10:11,580 | INFO     | stage-out finished correctly
[2025-10-11 23:10:51] 2025-10-12 03:10:12,751 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 23:10:51] 2025-10-12 03:10:13,575 | INFO     | time since job start (3942s) is within the limit (172800.0s)
[2025-10-11 23:10:51] 2025-10-12 03:10:14,000 | WARNING  | process 14631 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 23:10:51] 2025-10-12 03:10:14,001 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6838852959/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 23:10:51] 2025-10-12 03:10:14,082 | INFO     | number of running child processes to parent process 14631: 1
[2025-10-11 23:10:51] 2025-10-12 03:10:14,082 | INFO     | maximum number of monitored processes: 6
[2025-10-11 23:10:51] 2025-10-12 03:10:14,716 | INFO     | PID=8205 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-11 23:10:51] 2025-10-12 03:10:14,716 | INFO     | .. there are 2 such processes running
[2025-10-11 23:10:51] 2025-10-12 03:10:14,929 | INFO     | job 6838852959 has state=finished
[2025-10-11 23:10:51] 2025-10-12 03:10:14,930 | INFO     | preparing for final server update for job 6838852959 in state='finished'
[2025-10-11 23:10:51] 2025-10-12 03:10:14,930 | INFO     | this job has now completed (state=finished)
[2025-10-11 23:10:51] 2025-10-12 03:10:14,930 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 23:10:51] 2025-10-12 03:10:14,931 | INFO     | log transfer has been attempted: DONE
[2025-10-11 23:10:51] 2025-10-12 03:10:14,931 | INFO     | job 6838852959 has finished - writing final server update
[2025-10-11 23:10:51] 2025-10-12 03:10:14,931 | INFO     | total number of processed events: 400 (read)
[2025-10-11 23:10:51] 2025-10-12 03:10:14,932 | INFO     | executing command: lscpu
[2025-10-11 23:10:51] 2025-10-12 03:10:14,965 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 23:10:51] 2025-10-12 03:10:15,717 | INFO     | time since job start (3944s) is within the limit (172800.0s)
[2025-10-11 23:10:51] 2025-10-12 03:10:16,585 | INFO     | monitor loop #293: job 0:6838852959 is in state 'finished'
[2025-10-11 23:10:51] 2025-10-12 03:10:16,586 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 23:10:51] 2025-10-12 03:10:17,722 | INFO     | time since job start (3946s) is within the limit (172800.0s)
[2025-10-11 23:10:51] 2025-10-12 03:10:19,089 | INFO     | monitor loop #294: job 0:6838852959 is in state 'finished'
[2025-10-11 23:10:51] 2025-10-12 03:10:19,089 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 23:10:51] 2025-10-12 03:10:19,156 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 23:10:51] 2025-10-12 03:10:19,160 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2092.8677500000003
[2025-10-11 23:10:51] 2025-10-12 03:10:19,164 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6838852959/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 23:10:51] 2025-10-12 03:10:19,165 | INFO     | extracted standard info from prmon json
[2025-10-11 23:10:51] 2025-10-12 03:10:19,165 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 23:10:51] 2025-10-12 03:10:19,165 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 23:10:51] 2025-10-12 03:10:19,166 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 23:10:51] 2025-10-12 03:10:19,166 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 23:10:51] 2025-10-12 03:10:19,168 | INFO     | fitting pss+swap vs Time
[2025-10-11 23:10:51] 2025-10-12 03:10:19,168 | INFO     | sum of square deviations: 60482994.5
[2025-10-11 23:10:51] 2025-10-12 03:10:19,168 | INFO     | sum of deviations: 223896229.99999994
[2025-10-11 23:10:51] 2025-10-12 03:10:19,168 | INFO     | mean x: 1760236739.5
[2025-10-11 23:10:51] 2025-10-12 03:10:19,168 | INFO     | mean y: 2515753.7586206896
[2025-10-11 23:10:51] 2025-10-12 03:10:19,169 | INFO     | -- intersect: -6513536785.299147
[2025-10-11 23:10:51] 2025-10-12 03:10:19,169 | INFO     | intersect: -6513536785.299147
[2025-10-11 23:10:51] 2025-10-12 03:10:19,169 | INFO     | chi2: 0.0018835285343524616
[2025-10-11 23:10:51] 2025-10-12 03:10:19,169 | INFO     | -- intersect: -6513536785.299147
[2025-10-11 23:10:51] 2025-10-12 03:10:19,169 | INFO     | current memory leak: 3.70 B/s (using 58 data points, chi2=0.00)
[2025-10-11 23:10:51] 2025-10-12 03:10:19,170 | INFO     | could have reported an average CPU frequency of 2218 MHz (6 samples)
[2025-10-11 23:10:51] 2025-10-12 03:10:19,170 | INFO     | ..............................
[2025-10-11 23:10:51] 2025-10-12 03:10:19,170 | INFO     | . Timing measurements:
[2025-10-11 23:10:51] 2025-10-12 03:10:19,170 | INFO     | . get job = 0 s
[2025-10-11 23:10:51] 2025-10-12 03:10:19,170 | INFO     | . initial setup = 2 s
[2025-10-11 23:10:51] 2025-10-12 03:10:19,170 | INFO     | . payload setup = 5 s
[2025-10-11 23:10:51] 2025-10-12 03:10:19,170 | INFO     | . stage-in = 0 s
[2025-10-11 23:10:51] 2025-10-12 03:10:19,170 | INFO     | . payload execution = 3914 s
[2025-10-11 23:10:51] 2025-10-12 03:10:19,171 | INFO     | . stage-out = 0 s
[2025-10-11 23:10:51] 2025-10-12 03:10:19,171 | INFO     | . log creation = 0 s
[2025-10-11 23:10:51] 2025-10-12 03:10:19,171 | INFO     | ..............................
[2025-10-11 23:10:51] 2025-10-12 03:10:19,250 | INFO     | 
[2025-10-11 23:10:51] 2025-10-12 03:10:19,250 | INFO     | job summary report
[2025-10-11 23:10:51] 2025-10-12 03:10:19,251 | INFO     | --------------------------------------------------
[2025-10-11 23:10:51] 2025-10-12 03:10:19,251 | INFO     | PanDA job id: 6838852959
[2025-10-11 23:10:51] 2025-10-12 03:10:19,251 | INFO     | task id: 46676269
[2025-10-11 23:10:51] 2025-10-12 03:10:19,251 | INFO     | errors: (none)
[2025-10-11 23:10:51] 2025-10-12 03:10:19,251 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 23:10:51] 2025-10-12 03:10:19,251 | INFO     | pilot state: finished 
[2025-10-11 23:10:51] 2025-10-12 03:10:19,251 | INFO     | transexitcode: 0
[2025-10-11 23:10:51] 2025-10-12 03:10:19,251 | INFO     | exeerrorcode: 0
[2025-10-11 23:10:51] 2025-10-12 03:10:19,251 | INFO     | exeerrordiag: 
[2025-10-11 23:10:51] 2025-10-12 03:10:19,251 | INFO     | exitcode: 0
[2025-10-11 23:10:51] 2025-10-12 03:10:19,251 | INFO     | exitmsg: OK
[2025-10-11 23:10:51] 2025-10-12 03:10:19,251 | INFO     | cpuconsumptiontime: 28888 s
[2025-10-11 23:10:51] 2025-10-12 03:10:19,251 | INFO     | nevents: 400
[2025-10-11 23:10:51] 2025-10-12 03:10:19,251 | INFO     | neventsw: 0
[2025-10-11 23:10:51] 2025-10-12 03:10:19,251 | INFO     | pid: 14631
[2025-10-11 23:10:51] 2025-10-12 03:10:19,251 | INFO     | pgrp: 14631
[2025-10-11 23:10:51] 2025-10-12 03:10:19,251 | INFO     | corecount: 8
[2025-10-11 23:10:51] 2025-10-12 03:10:19,251 | INFO     | event service: False
[2025-10-11 23:10:51] 2025-10-12 03:10:19,251 | INFO     | sizes: {0: 2348857, 1: 2348857, 5: 2349147, 11: 2349203, 3924: 2375126, 3925: 2384307, 3927: 2384307, 3933: 2384501}
[2025-10-11 23:10:51] 2025-10-12 03:10:19,252 | INFO     | --------------------------------------------------
[2025-10-11 23:10:51] 2025-10-12 03:10:19,252 | INFO     | 
[2025-10-11 23:10:51] 2025-10-12 03:10:19,252 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-11 23:10:51] 2025-10-12 03:10:19,272 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 23:10:51] 2025-10-12 03:10:19,273 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 23:10:51] 2025-10-12 03:10:19,273 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 23:10:51] 2025-10-12 03:10:19,273 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 23:10:51] 2025-10-12 03:10:19,273 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 23:10:51] 2025-10-12 03:10:19,273 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 23:10:51] 2025-10-12 03:10:19,273 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 23:10:51] 2025-10-12 03:10:19,273 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 23:10:51] 2025-10-12 03:10:19,273 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 23:10:51] 2025-10-12 03:10:19,273 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 23:10:51] 2025-10-12 03:10:19,273 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 23:10:51] 2025-10-12 03:10:19,273 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 23:10:51] 2025-10-12 03:10:19,273 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 23:10:51] 2025-10-12 03:10:19,273 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 23:10:51] 2025-10-12 03:10:19,273 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 23:10:51] 2025-10-12 03:10:19,273 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 23:10:51] 2025-10-12 03:10:19,274 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 23:10:51] 2025-10-12 03:10:19,274 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 23:10:51] 2025-10-12 03:10:19,274 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 23:10:51] 2025-10-12 03:10:19,274 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 23:10:51] 2025-10-12 03:10:19,274 | INFO     | job 6838852959 has completed (purged errors)
[2025-10-11 23:10:51] 2025-10-12 03:10:19,274 | INFO     | overall cleanup function is called
[2025-10-11 23:10:51] 2025-10-12 03:10:20,280 | INFO     | --- collectZombieJob: --- 10, [14631]
[2025-10-11 23:10:51] 2025-10-12 03:10:20,280 | INFO     | zombie collector waiting for pid 14631
[2025-10-11 23:10:51] 2025-10-12 03:10:20,281 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 23:10:51] 2025-10-12 03:10:20,281 | INFO     | collected zombie processes
[2025-10-11 23:10:51] 2025-10-12 03:10:20,281 | INFO     | will attempt to kill all subprocesses of pid=14631
[2025-10-11 23:10:51] 2025-10-12 03:10:20,398 | INFO     | process IDs to be killed: [14631] (in reverse order)
[2025-10-11 23:10:51] 2025-10-12 03:10:20,457 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 23:10:51] 2025-10-12 03:10:20,458 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 23:10:51] 2025-10-12 03:10:20,462 | INFO     | did not find any defunct processes belonging to 14631
[2025-10-11 23:10:51] 2025-10-12 03:10:20,466 | INFO     | did not find any defunct processes belonging to 14631
[2025-10-11 23:10:51] 2025-10-12 03:10:20,466 | INFO     | ready for new job
[2025-10-11 23:10:51] 2025-10-12 03:10:20,466 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 23:10:51] 2025-10-12 03:10:20,468 | INFO     | ***************************************
[2025-10-11 23:10:51] 2025-10-12 03:10:20,468 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 23:10:51] 2025-10-12 03:10:20,468 | INFO     | ***************************************
[2025-10-11 23:10:51] 2025-10-12 03:10:20,468 | INFO     | 
[2025-10-11 23:10:51] 2025-10-12 03:10:20,470 | INFO     | architecture information:
[2025-10-11 23:10:51] 2025-10-12 03:10:20,470 | INFO     | executing command: cat /etc/os-release
[2025-10-11 23:10:51] 2025-10-12 03:10:20,486 | INFO     | cat /etc/os-release:
[2025-10-11 23:10:51] NAME="CentOS Linux"
[2025-10-11 23:10:51] VERSION="7 (Core)"
[2025-10-11 23:10:51] ID="centos"
[2025-10-11 23:10:51] ID_LIKE="rhel fedora"
[2025-10-11 23:10:51] VERSION_ID="7"
[2025-10-11 23:10:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 23:10:51] ANSI_COLOR="0;31"
[2025-10-11 23:10:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 23:10:51] HOME_URL="https://www.centos.org/"
[2025-10-11 23:10:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 23:10:51] 
[2025-10-11 23:10:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 23:10:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 23:10:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 23:10:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 23:10:51] 
[2025-10-11 23:10:51] 2025-10-12 03:10:20,486 | INFO     | ***************************************
[2025-10-11 23:10:51] 2025-10-12 03:10:20,989 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-11 23:10:51] 2025-10-12 03:10:21,007 | INFO     | sufficient remaining disk space (32780582912 B)
[2025-10-11 23:10:51] 2025-10-12 03:10:21,007 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 23:10:51] 2025-10-12 03:10:21,008 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 23:10:51] 2025-10-12 03:10:21,008 | INFO     | update_server=False
[2025-10-11 23:10:51] 2025-10-12 03:10:21,008 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 23:10:51] 2025-10-12 03:10:21,008 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:10:51] 2025-10-12 03:10:21,009 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:10:51] 2025-10-12 03:10:21,009 | INFO     | aborting loop
[2025-10-11 23:10:51] 2025-10-12 03:10:21,014 | INFO     | all data control threads have been joined
[2025-10-11 23:10:51] 2025-10-12 03:10:21,317 | INFO     | all payload control threads have been joined
[2025-10-11 23:10:51] 2025-10-12 03:10:22,010 | INFO     | [job] queue monitor thread has finished
[2025-10-11 23:10:51] 2025-10-12 03:10:22,013 | INFO     | [job] retrieve thread has finished
[2025-10-11 23:10:51] 2025-10-12 03:10:22,014 | INFO     | [job] job monitor thread has finished
[2025-10-11 23:10:51] 2025-10-12 03:10:22,019 | INFO     | [data] control thread has finished
[2025-10-11 23:10:51] 2025-10-12 03:10:22,093 | INFO     | all job control threads have been joined
[2025-10-11 23:10:51] 2025-10-12 03:10:22,145 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 23:10:51] 2025-10-12 03:10:22,322 | INFO     | [payload] control thread has finished
[2025-10-11 23:10:51] 2025-10-12 03:10:22,490 | INFO     | [job] validate thread has finished
[2025-10-11 23:10:51] 2025-10-12 03:10:22,536 | INFO     | [payload] failed_post thread has finished
[2025-10-11 23:10:51] 2025-10-12 03:10:22,587 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 23:10:51] 2025-10-12 03:10:22,699 | INFO     | [data] copytool_in thread has finished
[2025-10-11 23:10:51] 2025-10-12 03:10:22,699 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 23:10:51] 2025-10-12 03:10:23,033 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 23:10:51] 2025-10-12 03:10:23,098 | INFO     | [job] control thread has finished
[2025-10-11 23:10:51] 2025-10-12 03:10:23,110 | INFO     | [payload] validate_post thread has finished
[2025-10-11 23:10:51] 2025-10-12 03:10:23,321 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 23:10:51] 2025-10-12 03:10:23,346 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 23:10:51] 2025-10-12 03:10:24,150 | INFO     | [data] copytool_out thread has finished
[2025-10-11 23:10:51] 2025-10-12 03:10:27,352 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 23:10:51] 2025-10-12 03:10:36,878 | INFO     | [monitor] cgroup control has ended
[2025-10-11 23:10:51] 2025-10-12 03:10:37,392 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140218238740288)>', '<ExcThread(monitor, started 140218019792640)>']
[2025-10-11 23:10:51] 2025-10-12 03:10:42,410 | INFO     | all workflow threads have been joined
[2025-10-11 23:10:51] 2025-10-12 03:10:42,410 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 23:10:51] 2025-10-12 03:10:42,411 | INFO     | traces error code: 0
[2025-10-11 23:10:51] 2025-10-12 03:10:42,411 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 23:10:51] 2025-10-12 03:10:50,940 | INFO     | PID=8205 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-11 23:10:51] 2025-10-12 03:10:50,940 | INFO     | .. there are 2 such processes running
[2025-10-11 23:10:51] 2025-10-12 03:10:50,940 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 23:10:51] 2025-10-12 03:10:50,941 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 23:10:51] 2025-10-12 03:10:50,941 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 23:10:51] 2025-10-12 03:10:50,941 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 23:10:51] 2025-10-12 03:10:50,941 | CRITICAL | thread 'MainThread' is not alive
[2025-10-11 23:10:51] 2025-10-12 03:10:50,941 | INFO     | [monitor] control thread has ended
[2025-10-11 23:10:51] 2025-10-12 03:10:51,056 [wrapper] ==== pilot stdout END ====
[2025-10-11 23:10:51] 2025-10-12 03:10:51,060 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 23:10:51] 2025-10-12 03:10:51,063 [wrapper] pilotpid: 8205
[2025-10-11 23:10:51] 2025-10-12 03:10:51,067 [wrapper] Pilot exit status: 0
[2025-10-11 23:10:51] 2025-10-12 03:10:51,078 [wrapper] pandaids: 6838852959
[2025-10-11 23:10:51] 2025-10-12 03:10:51,119 [wrapper] cleanup supervisor_pilot 26971 8206
[2025-10-11 23:10:51] 2025-10-12 03:10:51,123 [wrapper] Test setup, not cleaning
[2025-10-11 23:10:51] 2025-10-12 03:10:51,127 [wrapper] apfmon messages muted
[2025-10-11 23:10:51] 2025-10-12 03:10:51,130 [wrapper] ==== wrapper stdout END ====
[2025-10-11 23:10:51] 2025-10-12 03:10:51,134 [wrapper] ==== wrapper stderr END ====
[2025-10-11 23:10:51]  *** Error codes and diagnostics ***
[2025-10-11 23:10:51]     "exeErrorCode": 0,
[2025-10-11 23:10:51]     "exeErrorDiag": "",
[2025-10-11 23:10:51]     "pilotErrorCode": 0,
[2025-10-11 23:10:51]     "pilotErrorDiag": "",
[2025-10-11 23:10:51]  *** Listing of results directory ***
[2025-10-11 23:10:51] total 413812
[2025-10-11 23:10:51] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 16:36 pilot3.tar.gz
[2025-10-11 23:10:51] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 16:43 queuedata.json
[2025-10-11 23:10:51] -rwx------ 1 boincer umatlas     36292 Oct 11 16:44 runpilot2-wrapper.sh
[2025-10-11 23:10:51] -rw-r--r-- 1 boincer umatlas       100 Oct 11 22:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 23:10:51] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 22:04 run_atlas
[2025-10-11 23:10:51] -rw-r--r-- 1 boincer umatlas       105 Oct 11 22:04 job.xml
[2025-10-11 23:10:51] -rw-r--r-- 2 boincer umatlas 222366918 Oct 11 22:04 EVNT.46676267._002597.pool.root.1
[2025-10-11 23:10:51] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 22:04 start_atlas.sh
[2025-10-11 23:10:51] drwxrwx--x 2 boincer umatlas      4096 Oct 11 22:04 shared
[2025-10-11 23:10:51] -rw-r--r-- 2 boincer umatlas    569686 Oct 11 22:04 input.tar.gz
[2025-10-11 23:10:51] -rw-r--r-- 1 boincer umatlas         0 Oct 11 22:04 boinc_lockfile
[2025-10-11 23:10:51] -rw-r--r-- 1 boincer umatlas      2550 Oct 11 22:04 pandaJob.out
[2025-10-11 23:10:51] -rw------- 1 boincer umatlas    975496 Oct 11 22:04 agis_schedconf.cvmfs.json
[2025-10-11 23:10:51] -rw------- 1 boincer umatlas   1560580 Oct 11 22:04 agis_ddmendpoints.agis.ALL.json
[2025-10-11 23:10:51] drwx------ 5 boincer umatlas      4096 Oct 11 22:04 pilot3
[2025-10-11 23:10:51] -rw-r--r-- 1 boincer umatlas      6135 Oct 11 23:09 init_data.xml
[2025-10-11 23:10:51] -rw------- 1 boincer umatlas 195656520 Oct 11 23:09 HITS.46676269._064595.pool.root.1
[2025-10-11 23:10:51] -rw-r--r-- 1 boincer umatlas       529 Oct 11 23:09 boinc_task_state.xml
[2025-10-11 23:10:51] -rw------- 1 boincer umatlas      1046 Oct 11 23:10 memory_monitor_summary.json
[2025-10-11 23:10:51] -rw------- 1 boincer umatlas    317200 Oct 11 23:10 log.46676269._064595.job.log.tgz.1
[2025-10-11 23:10:51] -rw------- 1 boincer umatlas        95 Oct 11 23:10 pilot_heartbeat.json
[2025-10-11 23:10:51] -rw------- 1 boincer umatlas      7832 Oct 11 23:10 heartbeat.json
[2025-10-11 23:10:51] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 23:10 boinc_mmap_file
[2025-10-11 23:10:51] -rw-r--r-- 1 boincer umatlas        27 Oct 11 23:10 wrapper_checkpoint.txt
[2025-10-11 23:10:51] -rw------- 1 boincer umatlas       889 Oct 11 23:10 pilotlog.txt
[2025-10-11 23:10:51] -rw------- 1 boincer umatlas    591648 Oct 11 23:10 log.46676269._064595.job.log.1
[2025-10-11 23:10:51] -rw------- 1 boincer umatlas       357 Oct 11 23:10 output.list
[2025-10-11 23:10:51] -rw-r--r-- 1 boincer umatlas       620 Oct 11 23:10 runtime_log
[2025-10-11 23:10:51] -rw------- 1 boincer umatlas    931840 Oct 11 23:10 result.tar.gz
[2025-10-11 23:10:51] -rw------- 1 boincer umatlas       657 Oct 11 23:10 ycsLDmTdvR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmuYSMDmaf5TDn.diag
[2025-10-11 23:10:51] -rw-r--r-- 1 boincer umatlas      8703 Oct 11 23:10 runtime_log.err
[2025-10-11 23:10:51] -rw-r--r-- 1 boincer umatlas     22313 Oct 11 23:10 stderr.txt
[2025-10-11 23:10:51] HITS file was successfully produced:
[2025-10-11 23:10:51] -rw------- 1 boincer umatlas 195656520 Oct 11 23:09 shared/HITS.pool.root.1
[2025-10-11 23:10:51]  *** Contents of shared directory: ***
[2025-10-11 23:10:51] total 409720
[2025-10-11 23:10:51] -rw-r--r-- 2 boincer umatlas 222366918 Oct 11 22:04 ATLAS.root_0
[2025-10-11 23:10:51] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 22:04 start_atlas.sh
[2025-10-11 23:10:51] -rw-r--r-- 2 boincer umatlas    569686 Oct 11 22:04 input.tar.gz
[2025-10-11 23:10:51] -rw------- 1 boincer umatlas 195656520 Oct 11 23:09 HITS.pool.root.1
[2025-10-11 23:10:51] -rw------- 1 boincer umatlas    931840 Oct 11 23:10 result.tar.gz
23:10:52 (4528): run_atlas exited; CPU time 28890.879267
23:10:52 (4528): called boinc_finish(0)

</stderr_txt>
]]>

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