Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:14 (13249): wrapper (7.7.26015): starting
00:02:14 (13249): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 00:02:14] Arguments: --nthreads 12
[2025-10-12 00:02:14] Threads: 12
[2025-10-12 00:02:14] Checking for CVMFS
[2025-10-12 00:02:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 00:02:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 00:02:17] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 00:02:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 00:02:18] 2.13.2.0 2984399 26262 132780 151606 0 26 38626903 40960000 11342 16776704 0 32494104 99.754 19970593 31126 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 00:02:18] CVMFS is ok
[2025-10-12 00:02:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 00:02:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 00:02:18] Further information can be found at the LHC@home message board.
[2025-10-12 00:02:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 00:02:18] Checking for apptainer binary...
[2025-10-12 00:02:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 00:02:18] Running /usr/bin/apptainer --version
[2025-10-12 00:02:19] apptainer version 1.4.3-1.el9
[2025-10-12 00:02:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 00:02:21] c-211-10.aglt2.org
[2025-10-12 00:02:21] apptainer works
[2025-10-12 00:02:22] Set ATHENA_PROC_NUMBER=12
[2025-10-12 00:02:22] Set ATHENA_CORE_NUMBER=12
[2025-10-12 00:02:22] Starting ATLAS job with PandaID=6838990859
[2025-10-12 00:02:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 10:37:48]  *** The last 200 lines of the pilot log: ***
[2025-10-12 10:37:48] 2025-10-12 14:36:43,307 | INFO     | sum of square deviations: 71419487317.9545
[2025-10-12 10:37:48] 2025-10-12 14:36:43,322 | INFO     | sum of deviations: 727936588071.8104
[2025-10-12 10:37:48] 2025-10-12 14:36:43,323 | INFO     | mean x: 1760260775.305057
[2025-10-12 10:37:48] 2025-10-12 14:36:43,323 | INFO     | mean y: 2619887.8352365415
[2025-10-12 10:37:48] 2025-10-12 14:36:43,323 | INFO     | -- intersect: -17938676962.80844
[2025-10-12 10:37:48] 2025-10-12 14:36:43,323 | INFO     | intersect: -17938676962.80844
[2025-10-12 10:37:48] 2025-10-12 14:36:43,324 | INFO     | chi2: 7.967266858413208
[2025-10-12 10:37:48] 2025-10-12 14:36:43,324 | INFO     | current chi2=7.967266858413208 (change=14.85024012988074 %)
[2025-10-12 10:37:48] 2025-10-12 14:36:43,325 | INFO     | right removable region: 612
[2025-10-12 10:37:48] 2025-10-12 14:36:43,326 | INFO     | sum of square deviations: 71418662845.56255
[2025-10-12 10:37:48] 2025-10-12 14:36:43,337 | INFO     | sum of deviations: 428087560706.488
[2025-10-12 10:37:48] 2025-10-12 14:36:43,337 | INFO     | mean x: 1760261080.3034258
[2025-10-12 10:37:48] 2025-10-12 14:36:43,337 | INFO     | mean y: 2632542.862969005
[2025-10-12 10:37:48] 2025-10-12 14:36:43,337 | INFO     | -- intersect: -10548473317.283796
[2025-10-12 10:37:48] 2025-10-12 14:36:43,337 | INFO     | intersect: -10548473317.283796
[2025-10-12 10:37:48] 2025-10-12 14:36:43,339 | INFO     | chi2: 5.028901615780887
[2025-10-12 10:37:48] 2025-10-12 14:36:43,339 | INFO     | current chi2=5.028901615780887 (change=46.2538694129443 %)
[2025-10-12 10:37:48] 2025-10-12 14:36:43,340 | INFO     | sum of square deviations: 69684655468.81583
[2025-10-12 10:37:48] 2025-10-12 14:36:43,350 | INFO     | sum of deviations: 257784916884.03302
[2025-10-12 10:37:48] 2025-10-12 14:36:43,351 | INFO     | mean x: 1760261232.8223684
[2025-10-12 10:37:48] 2025-10-12 14:36:43,351 | INFO     | mean y: 2647519.3799342103
[2025-10-12 10:37:48] 2025-10-12 14:36:43,351 | INFO     | -- intersect: -6509098754.52341
[2025-10-12 10:37:48] 2025-10-12 14:36:43,351 | INFO     | intersect: -6509098754.52341
[2025-10-12 10:37:48] 2025-10-12 14:36:43,352 | INFO     | chi2: 2.6348872880362233
[2025-10-12 10:37:48] 2025-10-12 14:36:43,353 | INFO     | current chi2=2.6348872880362233 (change=47.60511361431598 %)
[2025-10-12 10:37:48] 2025-10-12 14:36:43,354 | INFO     | sum of square deviations: 67979076056.3317
[2025-10-12 10:37:48] 2025-10-12 14:36:43,364 | INFO     | sum of deviations: 165274575858.02115
[2025-10-12 10:37:48] 2025-10-12 14:36:43,364 | INFO     | mean x: 1760261385.3349917
[2025-10-12 10:37:48] 2025-10-12 14:36:43,365 | INFO     | mean y: 2655782.311774461
[2025-10-12 10:37:48] 2025-10-12 14:36:43,365 | INFO     | -- intersect: -4276991290.5524354
[2025-10-12 10:37:48] 2025-10-12 14:36:43,365 | INFO     | intersect: -4276991290.5524354
[2025-10-12 10:37:48] 2025-10-12 14:36:43,366 | INFO     | chi2: 1.9214837706974648
[2025-10-12 10:37:48] 2025-10-12 14:36:43,366 | INFO     | current chi2=1.9214837706974648 (change=27.075295424513467 %)
[2025-10-12 10:37:48] 2025-10-12 14:36:43,367 | INFO     | sum of square deviations: 66301543439.15165
[2025-10-12 10:37:48] 2025-10-12 14:36:43,377 | INFO     | sum of deviations: 116682796724.86946
[2025-10-12 10:37:48] 2025-10-12 14:36:43,378 | INFO     | mean x: 1760261537.847826
[2025-10-12 10:37:48] 2025-10-12 14:36:43,378 | INFO     | mean y: 2660196.0535117057
[2025-10-12 10:37:48] 2025-10-12 14:36:43,378 | INFO     | -- intersect: -3095189847.087687
[2025-10-12 10:37:48] 2025-10-12 14:36:43,378 | INFO     | intersect: -3095189847.087687
[2025-10-12 10:37:48] 2025-10-12 14:36:43,379 | INFO     | chi2: 1.741702310486911
[2025-10-12 10:37:48] 2025-10-12 14:36:43,380 | INFO     | current chi2=1.741702310486911 (change=9.356387129166142 %)
[2025-10-12 10:37:48] 2025-10-12 14:36:43,380 | INFO     | left removable region: 40
[2025-10-12 10:37:48] 2025-10-12 14:36:43,381 | INFO     | sum of square deviations: 58022912942.11892
[2025-10-12 10:37:48] 2025-10-12 14:36:43,390 | INFO     | sum of deviations: 83923376931.4581
[2025-10-12 10:37:48] 2025-10-12 14:36:43,390 | INFO     | mean x: 1760261964.8986013
[2025-10-12 10:37:48] 2025-10-12 14:36:43,391 | INFO     | mean y: 2678028.6975524477
[2025-10-12 10:37:48] 2025-10-12 14:36:43,391 | INFO     | -- intersect: -2543335621.559207
[2025-10-12 10:37:48] 2025-10-12 14:36:43,391 | INFO     | intersect: -2543335621.559207
[2025-10-12 10:37:48] 2025-10-12 14:36:43,392 | INFO     | chi2: 0.013416037048924044
[2025-10-12 10:37:48] 2025-10-12 14:36:43,392 | INFO     | -- intersect: -2543335621.559207
[2025-10-12 10:37:48] 2025-10-12 14:36:43,393 | INFO     | current memory leak: 1.45 B/s (using 572 data points, chi2=0.01)
[2025-10-12 10:37:48] 2025-10-12 14:36:43,394 | INFO     | could have reported an average CPU frequency of 2379 MHz (24 samples)
[2025-10-12 10:37:48] 2025-10-12 14:36:43,394 | INFO     | ..............................
[2025-10-12 10:37:48] 2025-10-12 14:36:43,394 | INFO     | . Timing measurements:
[2025-10-12 10:37:48] 2025-10-12 14:36:43,394 | INFO     | . get job = 0 s
[2025-10-12 10:37:48] 2025-10-12 14:36:43,394 | INFO     | . initial setup = 12 s
[2025-10-12 10:37:48] 2025-10-12 14:36:43,395 | INFO     | . payload setup = 75 s
[2025-10-12 10:37:48] 2025-10-12 14:36:43,395 | INFO     | . stage-in = 2 s
[2025-10-12 10:37:48] 2025-10-12 14:36:43,395 | INFO     | . payload execution = 37708 s
[2025-10-12 10:37:48] 2025-10-12 14:36:43,395 | INFO     | . stage-out = 3 s
[2025-10-12 10:37:48] 2025-10-12 14:36:43,395 | INFO     | . log creation = 0 s
[2025-10-12 10:37:48] 2025-10-12 14:36:43,395 | INFO     | ..............................
[2025-10-12 10:37:48] 2025-10-12 14:36:43,471 | INFO     | time since job start (37939s) is within the limit (172800.0s)
[2025-10-12 10:37:48] 2025-10-12 14:36:43,667 | INFO     | 
[2025-10-12 10:37:48] 2025-10-12 14:36:43,668 | INFO     | job summary report
[2025-10-12 10:37:48] 2025-10-12 14:36:43,668 | INFO     | --------------------------------------------------
[2025-10-12 10:37:48] 2025-10-12 14:36:43,668 | INFO     | PanDA job id: 6838990859
[2025-10-12 10:37:48] 2025-10-12 14:36:43,668 | INFO     | task id: 46676269
[2025-10-12 10:37:48] 2025-10-12 14:36:43,668 | INFO     | errors: (none)
[2025-10-12 10:37:48] 2025-10-12 14:36:43,669 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 10:37:48] 2025-10-12 14:36:43,669 | INFO     | pilot state: finished 
[2025-10-12 10:37:48] 2025-10-12 14:36:43,669 | INFO     | transexitcode: 0
[2025-10-12 10:37:48] 2025-10-12 14:36:43,669 | INFO     | exeerrorcode: 0
[2025-10-12 10:37:48] 2025-10-12 14:36:43,669 | INFO     | exeerrordiag: 
[2025-10-12 10:37:48] 2025-10-12 14:36:43,669 | INFO     | exitcode: 0
[2025-10-12 10:37:48] 2025-10-12 14:36:43,669 | INFO     | exitmsg: OK
[2025-10-12 10:37:48] 2025-10-12 14:36:43,669 | INFO     | cpuconsumptiontime: 66456 s
[2025-10-12 10:37:48] 2025-10-12 14:36:43,670 | INFO     | nevents: 400
[2025-10-12 10:37:48] 2025-10-12 14:36:43,670 | INFO     | neventsw: 0
[2025-10-12 10:37:48] 2025-10-12 14:36:43,670 | INFO     | pid: 37423
[2025-10-12 10:37:48] 2025-10-12 14:36:43,670 | INFO     | pgrp: 37423
[2025-10-12 10:37:48] 2025-10-12 14:36:43,670 | INFO     | corecount: 12
[2025-10-12 10:37:48] 2025-10-12 14:36:43,670 | INFO     | event service: False
[2025-10-12 10:37:48] 2025-10-12 14:36:43,670 | INFO     | sizes: {0: 2348028, 1: 2348713, 2: 2348884, 4: 2348912, 16: 2348940, 29: 2348968, 41: 2349124, 55: 2349354, 57: 2349442, 66: 2349470, 37786: 2390079, 37787: 239035
[2025-10-12 10:37:48] 2025-10-12 14:36:43,670 | INFO     | --------------------------------------------------
[2025-10-12 10:37:48] 2025-10-12 14:36:43,671 | INFO     | 
[2025-10-12 10:37:48] 2025-10-12 14:36:43,671 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 10:37:48] 2025-10-12 14:36:43,694 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 10:37:48] 2025-10-12 14:36:43,694 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 10:37:48] 2025-10-12 14:36:43,695 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 10:37:48] 2025-10-12 14:36:43,695 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 10:37:48] 2025-10-12 14:36:43,695 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 10:37:48] 2025-10-12 14:36:43,695 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 10:37:48] 2025-10-12 14:36:43,695 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 10:37:48] 2025-10-12 14:36:43,695 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 10:37:48] 2025-10-12 14:36:43,695 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 10:37:48] 2025-10-12 14:36:43,696 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 10:37:48] 2025-10-12 14:36:43,696 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 10:37:48] 2025-10-12 14:36:43,696 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 10:37:48] 2025-10-12 14:36:43,696 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 10:37:48] 2025-10-12 14:36:43,696 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 10:37:48] 2025-10-12 14:36:43,696 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 10:37:48] 2025-10-12 14:36:43,696 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 10:37:48] 2025-10-12 14:36:43,697 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 10:37:48] 2025-10-12 14:36:43,697 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 10:37:48] 2025-10-12 14:36:43,697 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 10:37:48] 2025-10-12 14:36:43,697 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 10:37:48] 2025-10-12 14:36:43,697 | INFO     | job 6838990859 has completed (purged errors)
[2025-10-12 10:37:48] 2025-10-12 14:36:43,698 | INFO     | overall cleanup function is called
[2025-10-12 10:37:48] 2025-10-12 14:36:44,742 | INFO     | --- collectZombieJob: --- 10, [37423]
[2025-10-12 10:37:48] 2025-10-12 14:36:44,742 | INFO     | zombie collector waiting for pid 37423
[2025-10-12 10:37:48] 2025-10-12 14:36:44,742 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 10:37:48] 2025-10-12 14:36:44,742 | INFO     | collected zombie processes
[2025-10-12 10:37:48] 2025-10-12 14:36:44,743 | INFO     | will attempt to kill all subprocesses of pid=37423
[2025-10-12 10:37:48] 2025-10-12 14:36:45,594 | INFO     | PID=19664 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 10:37:48] 2025-10-12 14:36:45,594 | INFO     | .. there are 8 such processes running
[2025-10-12 10:37:48] 2025-10-12 14:36:45,640 | INFO     | process IDs to be killed: [37423] (in reverse order)
[2025-10-12 10:37:48] 2025-10-12 14:36:45,986 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 10:37:48] 2025-10-12 14:36:45,986 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 10:37:48] 2025-10-12 14:36:45,998 | INFO     | did not find any defunct processes belonging to 37423
[2025-10-12 10:37:48] 2025-10-12 14:36:46,008 | INFO     | did not find any defunct processes belonging to 37423
[2025-10-12 10:37:48] 2025-10-12 14:36:46,009 | INFO     | ready for new job
[2025-10-12 10:37:48] 2025-10-12 14:36:46,009 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 10:37:48] 2025-10-12 14:36:46,061 | INFO     | ***************************************
[2025-10-12 10:37:48] 2025-10-12 14:36:46,061 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 10:37:48] 2025-10-12 14:36:46,062 | INFO     | ***************************************
[2025-10-12 10:37:48] 2025-10-12 14:36:46,062 | INFO     | 
[2025-10-12 10:37:48] 2025-10-12 14:36:46,096 | INFO     | architecture information:
[2025-10-12 10:37:48] 2025-10-12 14:36:46,113 | INFO     | executing command: cat /etc/os-release
[2025-10-12 10:37:48] 2025-10-12 14:36:46,256 | INFO     | cat /etc/os-release:
[2025-10-12 10:37:48] NAME="CentOS Linux"
[2025-10-12 10:37:48] VERSION="7 (Core)"
[2025-10-12 10:37:48] ID="centos"
[2025-10-12 10:37:48] ID_LIKE="rhel fedora"
[2025-10-12 10:37:48] VERSION_ID="7"
[2025-10-12 10:37:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 10:37:48] ANSI_COLOR="0;31"
[2025-10-12 10:37:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 10:37:48] HOME_URL="https://www.centos.org/"
[2025-10-12 10:37:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 10:37:48] 
[2025-10-12 10:37:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 10:37:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 10:37:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 10:37:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 10:37:48] 
[2025-10-12 10:37:48] 2025-10-12 14:36:46,259 | INFO     | ***************************************
[2025-10-12 10:37:48] 2025-10-12 14:36:46,763 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 10:37:48] 2025-10-12 14:36:46,883 | INFO     | sufficient remaining disk space (63286804480 B)
[2025-10-12 10:37:48] 2025-10-12 14:36:46,884 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 10:37:48] 2025-10-12 14:36:46,884 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 10:37:48] 2025-10-12 14:36:46,884 | INFO     | update_server=False
[2025-10-12 10:37:48] 2025-10-12 14:36:46,884 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 10:37:48] 2025-10-12 14:36:47,068 | INFO     | all job control threads have been joined
[2025-10-12 10:37:48] 2025-10-12 14:36:47,698 | INFO     | all payload control threads have been joined
[2025-10-12 10:37:48] 2025-10-12 14:36:47,841 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:37:48] 2025-10-12 14:36:47,841 | INFO     | aborting loop
[2025-10-12 10:37:48] 2025-10-12 14:36:47,891 | INFO     | [job] retrieve thread has finished
[2025-10-12 10:37:48] 2025-10-12 14:36:47,920 | INFO     | all data control threads have been joined
[2025-10-12 10:37:48] 2025-10-12 14:36:48,018 | INFO     | [payload] validate_post thread has finished
[2025-10-12 10:37:48] 2025-10-12 14:36:48,074 | INFO     | [job] control thread has finished
[2025-10-12 10:37:48] 2025-10-12 14:36:48,224 | INFO     | [job] validate thread has finished
[2025-10-12 10:37:48] 2025-10-12 14:36:48,322 | INFO     | [data] copytool_in thread has finished
[2025-10-12 10:37:48] 2025-10-12 14:36:48,324 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 10:37:48] 2025-10-12 14:36:48,605 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 10:37:48] 2025-10-12 14:36:48,691 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:37:48] 2025-10-12 14:36:48,704 | INFO     | [payload] control thread has finished
[2025-10-12 10:37:48] 2025-10-12 14:36:48,847 | INFO     | [job] job monitor thread has finished
[2025-10-12 10:37:48] 2025-10-12 14:36:48,928 | INFO     | [data] control thread has finished
[2025-10-12 10:37:48] 2025-10-12 14:36:49,014 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 10:37:48] 2025-10-12 14:36:49,169 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 10:37:48] 2025-10-12 14:36:49,281 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 10:37:48] 2025-10-12 14:36:49,309 | INFO     | [payload] failed_post thread has finished
[2025-10-12 10:37:48] 2025-10-12 14:36:49,388 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 10:37:48] 2025-10-12 14:36:49,697 | INFO     | [job] queue monitor thread has finished
[2025-10-12 10:37:48] 2025-10-12 14:36:50,331 | INFO     | [data] copytool_out thread has finished
[2025-10-12 10:37:48] 2025-10-12 14:36:53,182 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 10:37:48] 2025-10-12 14:37:18,281 | INFO     | PID=19664 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 10:37:48] 2025-10-12 14:37:18,281 | INFO     | .. there are 8 such processes running
[2025-10-12 10:37:48] 2025-10-12 14:37:18,282 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 10:37:48] 2025-10-12 14:37:18,282 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 10:37:48] 2025-10-12 14:37:18,282 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 10:37:48] 2025-10-12 14:37:40,260 | INFO     | [monitor] cgroup control has ended
[2025-10-12 10:37:48] 2025-10-12 14:37:41,516 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140145685661504)>', '<ExcThread(monitor, started 140145051301632)>']
[2025-10-12 10:37:48] 2025-10-12 14:37:42,426 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 10:37:48] 2025-10-12 14:37:42,426 | INFO     | [monitor] control thread has ended
[2025-10-12 10:37:48] 2025-10-12 14:37:46,543 | INFO     | all workflow threads have been joined
[2025-10-12 10:37:48] 2025-10-12 14:37:46,543 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 10:37:48] 2025-10-12 14:37:46,544 | INFO     | traces error code: 0
[2025-10-12 10:37:48] 2025-10-12 14:37:46,544 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 10:37:48] 2025-10-12 14:37:48,063 [wrapper] ==== pilot stdout END ====
[2025-10-12 10:37:48] 2025-10-12 14:37:48,080 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 10:37:48] 2025-10-12 14:37:48,084 [wrapper] pilotpid: 19664
[2025-10-12 10:37:48] 2025-10-12 14:37:48,087 [wrapper] Pilot exit status: 0
[2025-10-12 10:37:48] 2025-10-12 14:37:48,137 [wrapper] pandaids: 6838990859
[2025-10-12 10:37:48] 2025-10-12 14:37:48,362 [wrapper] cleanup supervisor_pilot  949320 19665
[2025-10-12 10:37:48] 2025-10-12 14:37:48,370 [wrapper] Test setup, not cleaning
[2025-10-12 10:37:48] 2025-10-12 14:37:48,374 [wrapper] apfmon messages muted
[2025-10-12 10:37:48] 2025-10-12 14:37:48,379 [wrapper] ==== wrapper stdout END ====
[2025-10-12 10:37:48] 2025-10-12 14:37:48,384 [wrapper] ==== wrapper stderr END ====
[2025-10-12 10:37:48]  *** Error codes and diagnostics ***
[2025-10-12 10:37:48]     "exeErrorCode": 0,
[2025-10-12 10:37:48]     "exeErrorDiag": "",
[2025-10-12 10:37:48]     "pilotErrorCode": 0,
[2025-10-12 10:37:48]     "pilotErrorDiag": "",
[2025-10-12 10:37:48]  *** Listing of results directory ***
[2025-10-12 10:37:48] total 421164
[2025-10-12 10:37:48] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 18:51 pilot3.tar.gz
[2025-10-12 10:37:48] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 18:57 queuedata.json
[2025-10-12 10:37:48] -rwx------. 1 boincer umatlas     36292 Oct 11 18:58 runpilot2-wrapper.sh
[2025-10-12 10:37:48] -rw-r--r--. 1 boincer umatlas       100 Oct 12 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 10:37:48] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 00:02 run_atlas
[2025-10-12 10:37:48] -rw-r--r--. 1 boincer umatlas       105 Oct 12 00:02 job.xml
[2025-10-12 10:37:48] -rw-r--r--. 2 boincer umatlas 223496834 Oct 12 00:02 EVNT.46676267._002673.pool.root.1
[2025-10-12 10:37:48] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 00:02 start_atlas.sh
[2025-10-12 10:37:48] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 00:02 shared
[2025-10-12 10:37:48] -rw-r--r--. 2 boincer umatlas    569688 Oct 12 00:02 input.tar.gz
[2025-10-12 10:37:48] -rw-r--r--. 1 boincer umatlas         0 Oct 12 00:02 boinc_lockfile
[2025-10-12 10:37:48] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 00:02 pandaJob.out
[2025-10-12 10:37:48] -rw-------. 1 boincer umatlas    975512 Oct 12 00:04 agis_schedconf.cvmfs.json
[2025-10-12 10:37:48] drwx------. 5 boincer umatlas      4096 Oct 12 00:04 pilot3
[2025-10-12 10:37:48] -rw-------. 1 boincer umatlas 193576772 Oct 12 10:33 HITS.46676269._066348.pool.root.1
[2025-10-12 10:37:48] -rw-r--r--. 1 boincer umatlas       531 Oct 12 10:33 boinc_task_state.xml
[2025-10-12 10:37:48] -rw-------. 1 boincer umatlas      1054 Oct 12 10:36 memory_monitor_summary.json
[2025-10-12 10:37:48] -rw-------. 1 boincer umatlas   1560580 Oct 12 10:36 agis_ddmendpoints.agis.ALL.json
[2025-10-12 10:37:48] -rw-------. 1 boincer umatlas    805908 Oct 12 10:36 log.46676269._066348.job.log.tgz.1
[2025-10-12 10:37:48] -rw-------. 1 boincer umatlas        95 Oct 12 10:36 pilot_heartbeat.json
[2025-10-12 10:37:48] -rw-------. 1 boincer umatlas      7828 Oct 12 10:36 heartbeat.json
[2025-10-12 10:37:48] -rw-r--r--. 1 boincer umatlas      6614 Oct 12 10:37 init_data.xml
[2025-10-12 10:37:48] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 10:37 boinc_mmap_file
[2025-10-12 10:37:48] -rw-------. 1 boincer umatlas      4821 Oct 12 10:37 pilotlog.txt
[2025-10-12 10:37:48] -rw-r--r--. 1 boincer umatlas        28 Oct 12 10:37 wrapper_checkpoint.txt
[2025-10-12 10:37:48] -rw-------. 1 boincer umatlas   4340881 Oct 12 10:37 log.46676269._066348.job.log.1
[2025-10-12 10:37:48] -rw-------. 1 boincer umatlas       357 Oct 12 10:37 output.list
[2025-10-12 10:37:48] -rw-r--r--. 1 boincer umatlas       620 Oct 12 10:37 runtime_log
[2025-10-12 10:37:48] -rw-------. 1 boincer umatlas   5171200 Oct 12 10:37 result.tar.gz
[2025-10-12 10:37:48] -rw-r--r--. 1 boincer umatlas      8706 Oct 12 10:37 runtime_log.err
[2025-10-12 10:37:48] -rw-------. 1 boincer umatlas       658 Oct 12 10:37 ECSKDmMjxR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmejSMDmGLxK7n.diag
[2025-10-12 10:37:48] -rw-r--r--. 1 boincer umatlas     21176 Oct 12 10:37 stderr.txt
[2025-10-12 10:37:48] HITS file was successfully produced:
[2025-10-12 10:37:48] -rw-------. 1 boincer umatlas 193576772 Oct 12 10:33 shared/HITS.pool.root.1
[2025-10-12 10:37:48]  *** Contents of shared directory: ***
[2025-10-12 10:37:48] total 412932
[2025-10-12 10:37:48] -rw-r--r--. 2 boincer umatlas 223496834 Oct 12 00:02 ATLAS.root_0
[2025-10-12 10:37:48] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 00:02 start_atlas.sh
[2025-10-12 10:37:48] -rw-r--r--. 2 boincer umatlas    569688 Oct 12 00:02 input.tar.gz
[2025-10-12 10:37:48] -rw-------. 1 boincer umatlas 193576772 Oct 12 10:33 HITS.pool.root.1
[2025-10-12 10:37:48] -rw-------. 1 boincer umatlas   5171200 Oct 12 10:37 result.tar.gz
10:37:50 (13249): run_atlas exited; CPU time 67596.846937
10:37:50 (13249): called boinc_finish(0)

</stderr_txt>
]]>

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