Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:50:14 (2974388): wrapper (7.7.26015): starting
11:50:14 (2974388): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 11:50:14] Arguments: --nthreads 3
[2025-10-12 11:50:14] Threads: 3
[2025-10-12 11:50:14] Checking for CVMFS
[2025-10-12 11:50:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:50:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:50:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:50:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:50:15] 2.9.2.0 1694695 4191 83144 151615 3 57 29896002 36864001 0 130560 0 3353311 99.991 142952 956 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 11:50:15] CVMFS is ok
[2025-10-12 11:50:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:50:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:50:15] Further information can be found at the LHC@home message board.
[2025-10-12 11:50:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:50:15] Checking for apptainer binary...
[2025-10-12 11:50:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:50:15] Running /usr/bin/apptainer --version
[2025-10-12 11:50:15] apptainer version 1.4.1-1.1
[2025-10-12 11:50:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:50:15] thA312a
[2025-10-12 11:50:15] apptainer works
[2025-10-12 11:50:15] Set ATHENA_PROC_NUMBER=3
[2025-10-12 11:50:15] Set ATHENA_CORE_NUMBER=3
[2025-10-12 11:50:15] Starting ATLAS job with PandaID=6838852443
[2025-10-12 11:50:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:12:31]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:12:31] 2025-10-12 11:11:58,951 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:12:31] 2025-10-12 11:11:58,951 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:12:31] 2025-10-12 11:11:58,951 | INFO     | job 6838852443 has completed (purged errors)
[2025-10-12 13:12:31] 2025-10-12 11:11:58,951 | INFO     | overall cleanup function is called
[2025-10-12 13:12:31] 2025-10-12 11:11:59,958 | INFO     | --- collectZombieJob: --- 10, [2984552]
[2025-10-12 13:12:31] 2025-10-12 11:11:59,958 | INFO     | zombie collector waiting for pid 2984552
[2025-10-12 13:12:31] 2025-10-12 11:11:59,958 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:12:31] 2025-10-12 11:11:59,958 | INFO     | collected zombie processes
[2025-10-12 13:12:31] 2025-10-12 11:11:59,958 | INFO     | will attempt to kill all subprocesses of pid=2984552
[2025-10-12 13:12:31] 2025-10-12 11:12:00,000 | INFO     | process IDs to be killed: [2984552] (in reverse order)
[2025-10-12 13:12:31] 2025-10-12 11:12:00,025 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:12:31] 2025-10-12 11:12:00,026 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:12:31] 2025-10-12 11:12:00,027 | INFO     | did not find any defunct processes belonging to 2984552
[2025-10-12 13:12:31] 2025-10-12 11:12:00,028 | INFO     | did not find any defunct processes belonging to 2984552
[2025-10-12 13:12:31] 2025-10-12 11:12:00,028 | INFO     | ready for new job
[2025-10-12 13:12:31] 2025-10-12 11:12:00,028 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:12:31] 2025-10-12 11:12:00,029 | INFO     | ***************************************
[2025-10-12 13:12:31] 2025-10-12 11:12:00,029 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:12:31] 2025-10-12 11:12:00,029 | INFO     | ***************************************
[2025-10-12 13:12:31] 2025-10-12 11:12:00,029 | INFO     | 
[2025-10-12 13:12:31] 2025-10-12 11:12:00,029 | INFO     | architecture information:
[2025-10-12 13:12:31] 2025-10-12 11:12:00,029 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:12:31] 2025-10-12 11:12:00,038 | INFO     | cat /etc/os-release:
[2025-10-12 13:12:31] NAME="CentOS Linux"
[2025-10-12 13:12:31] VERSION="7 (Core)"
[2025-10-12 13:12:31] ID="centos"
[2025-10-12 13:12:31] ID_LIKE="rhel fedora"
[2025-10-12 13:12:31] VERSION_ID="7"
[2025-10-12 13:12:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:12:31] ANSI_COLOR="0;31"
[2025-10-12 13:12:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:12:31] HOME_URL="https://www.centos.org/"
[2025-10-12 13:12:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:12:31] 
[2025-10-12 13:12:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:12:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:12:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:12:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:12:31] 
[2025-10-12 13:12:31] 2025-10-12 11:12:00,038 | INFO     | ***************************************
[2025-10-12 13:12:31] 2025-10-12 11:12:00,542 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 13:12:31] 2025-10-12 11:12:00,556 | INFO     | sufficient remaining disk space (274660851712 B)
[2025-10-12 13:12:31] 2025-10-12 11:12:00,556 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:12:31] 2025-10-12 11:12:00,556 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:12:31] 2025-10-12 11:12:00,556 | INFO     | update_server=False
[2025-10-12 13:12:31] 2025-10-12 11:12:00,556 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:12:31] 2025-10-12 11:12:00,556 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:12:31] 2025-10-12 11:12:00,897 | INFO     | all payload control threads have been joined
[2025-10-12 13:12:31] 2025-10-12 11:12:00,931 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:12:31] 2025-10-12 11:12:01,019 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:12:31] 2025-10-12 11:12:01,020 | INFO     | aborting loop
[2025-10-12 13:12:31] 2025-10-12 11:12:01,294 | INFO     | all data control threads have been joined
[2025-10-12 13:12:31] 2025-10-12 11:12:01,395 | INFO     | all job control threads have been joined
[2025-10-12 13:12:31] 2025-10-12 11:12:01,562 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:12:31] 2025-10-12 11:12:01,562 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:12:31] 2025-10-12 11:12:01,618 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:12:31] 2025-10-12 11:12:01,902 | INFO     | [payload] control thread has finished
[2025-10-12 13:12:31] 2025-10-12 11:12:02,025 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:12:31] 2025-10-12 11:12:02,119 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:12:31] 2025-10-12 11:12:02,252 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:12:31] 2025-10-12 11:12:02,300 | INFO     | [data] control thread has finished
[2025-10-12 13:12:31] 2025-10-12 11:12:02,400 | INFO     | [job] control thread has finished
[2025-10-12 13:12:31] 2025-10-12 11:12:02,405 | INFO     | [job] validate thread has finished
[2025-10-12 13:12:31] 2025-10-12 11:12:02,460 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:12:31] 2025-10-12 11:12:02,468 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:12:31] 2025-10-12 11:12:02,552 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:12:31] 2025-10-12 11:12:02,937 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:12:31] 2025-10-12 11:12:04,015 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:12:31] 2025-10-12 11:12:08,022 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:12:31] 2025-10-12 11:12:10,655 | INFO     | job.realtimelogging is not enabled
[2025-10-12 13:12:31] 2025-10-12 11:12:11,660 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:12:31] 2025-10-12 11:12:26,732 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:12:31] 2025-10-12 11:12:26,775 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140530140989248)>', '<ExcThread(monitor, started 140529484412672)>']
[2025-10-12 13:12:31] 2025-10-12 11:12:31,147 | INFO     | PID=2978115 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 13:12:31] 2025-10-12 11:12:31,147 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:12:31] 2025-10-12 11:12:31,147 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:12:31] 2025-10-12 11:12:31,147 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:12:31] 2025-10-12 11:12:31,147 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:12:31] 2025-10-12 11:12:31,147 | INFO     | [monitor] control thread has ended
[2025-10-12 13:12:31] 2025-10-12 11:12:31,801 | INFO     | all workflow threads have been joined
[2025-10-12 13:12:31] 2025-10-12 11:12:31,801 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:12:31] 2025-10-12 11:12:31,801 | INFO     | traces error code: 0
[2025-10-12 13:12:31] 2025-10-12 11:12:31,801 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:12:31] 2025-10-12 11:12:31,851 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:12:31] 2025-10-12 11:12:31,854 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:12:31] 2025-10-12 11:12:31,856 [wrapper] pilotpid: 2978115
[2025-10-12 13:12:31] 2025-10-12 11:12:31,859 [wrapper] Pilot exit status: 0
[2025-10-12 13:12:31] 2025-10-12 11:12:31,867 [wrapper] pandaids: 6838852443
[2025-10-12 13:12:31] 2025-10-12 11:12:31,883 [wrapper] cleanup supervisor_pilot 2996824 2978116
[2025-10-12 13:12:31] 2025-10-12 11:12:31,886 [wrapper] Test setup, not cleaning
[2025-10-12 13:12:31] 2025-10-12 11:12:31,888 [wrapper] apfmon messages muted
[2025-10-12 13:12:31] 2025-10-12 11:12:31,891 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:12:31] 2025-10-12 11:12:31,893 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:12:31]  *** Error codes and diagnostics ***
[2025-10-12 13:12:31]     "exeErrorCode": 0,
[2025-10-12 13:12:31]     "exeErrorDiag": "",
[2025-10-12 13:12:31]     "pilotErrorCode": 0,
[2025-10-12 13:12:31]     "pilotErrorDiag": "",
[2025-10-12 13:12:31]  *** Listing of results directory ***
[2025-10-12 13:12:31] total 408628
[2025-10-12 13:12:31] -rw-r--r-- 1 boinc boinc    557409 Oct 11 22:21 pilot3.tar.gz
[2025-10-12 13:12:31] -rw-r--r-- 1 boinc boinc      5112 Oct 11 22:25 queuedata.json
[2025-10-12 13:12:31] -rwx------ 1 boinc boinc     36292 Oct 11 22:26 runpilot2-wrapper.sh
[2025-10-12 13:12:31] -rw-r--r-- 1 boinc boinc       100 Oct 12 11:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:12:31] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 11:50 run_atlas
[2025-10-12 13:12:31] -rw-r--r-- 1 boinc boinc       105 Oct 12 11:50 job.xml
[2025-10-12 13:12:31] -rw-r--r-- 2 boinc boinc 219374699 Oct 12 11:50 EVNT.46676267._002581.pool.root.1
[2025-10-12 13:12:31] -rw-r--r-- 2 boinc boinc    569676 Oct 12 11:50 input.tar.gz
[2025-10-12 13:12:31] -rw-r--r-- 2 boinc boinc     15120 Oct 12 11:50 start_atlas.sh
[2025-10-12 13:12:31] drwxrwx--x 2 boinc boinc      4096 Oct 12 11:50 shared
[2025-10-12 13:12:31] -rw-r--r-- 1 boinc boinc         0 Oct 12 11:50 boinc_setup_complete
[2025-10-12 13:12:31] -rw-r--r-- 1 boinc boinc      6447 Oct 12 11:50 init_data.xml
[2025-10-12 13:12:31] -rw-r--r-- 1 boinc boinc         0 Oct 12 11:50 boinc_lockfile
[2025-10-12 13:12:31] -rw-r--r-- 1 boinc boinc      2550 Oct 12 11:50 pandaJob.out
[2025-10-12 13:12:31] -rw------- 1 boinc boinc    975536 Oct 12 11:50 agis_schedconf.cvmfs.json
[2025-10-12 13:12:31] -rw------- 1 boinc boinc   1560580 Oct 12 11:50 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:12:31] drwx------ 5 boinc boinc      4096 Oct 12 11:50 pilot3
[2025-10-12 13:12:31] -rw------- 1 boinc boinc 193201936 Oct 12 13:11 HITS.46676269._064225.pool.root.1
[2025-10-12 13:12:31] -rw-r--r-- 1 boinc boinc       529 Oct 12 13:11 boinc_task_state.xml
[2025-10-12 13:12:31] -rw------- 1 boinc boinc        95 Oct 12 13:11 pilot_heartbeat.json
[2025-10-12 13:12:31] -rw------- 1 boinc boinc      1014 Oct 12 13:11 memory_monitor_summary.json
[2025-10-12 13:12:31] -rw------- 1 boinc boinc    259010 Oct 12 13:11 log.46676269._064225.job.log.tgz.1
[2025-10-12 13:12:31] -rw------- 1 boinc boinc      7763 Oct 12 13:11 heartbeat.json
[2025-10-12 13:12:31] -rw-r--r-- 1 boinc boinc        27 Oct 12 13:12 wrapper_checkpoint.txt
[2025-10-12 13:12:31] -rw-r--r-- 1 boinc boinc      8192 Oct 12 13:12 boinc_mmap_file
[2025-10-12 13:12:31] -rw------- 1 boinc boinc      4824 Oct 12 13:12 pilotlog.txt
[2025-10-12 13:12:31] -rw------- 1 boinc boinc    720537 Oct 12 13:12 log.46676269._064225.job.log.1
[2025-10-12 13:12:31] -rw------- 1 boinc boinc       357 Oct 12 13:12 output.list
[2025-10-12 13:12:31] -rw-r--r-- 1 boinc boinc       620 Oct 12 13:12 runtime_log
[2025-10-12 13:12:31] -rw------- 1 boinc boinc   1003520 Oct 12 13:12 result.tar.gz
[2025-10-12 13:12:31] -rw-r--r-- 1 boinc boinc      8782 Oct 12 13:12 runtime_log.err
[2025-10-12 13:12:31] -rw------- 1 boinc boinc       659 Oct 12 13:12 TJCODmLLvR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6VhNDmoy7pEo.diag
[2025-10-12 13:12:31] -rw-r--r-- 1 boinc boinc     11110 Oct 12 13:12 stderr.txt
[2025-10-12 13:12:31] HITS file was successfully produced:
[2025-10-12 13:12:31] -rw------- 1 boinc boinc 193201936 Oct 12 13:11 shared/HITS.pool.root.1
[2025-10-12 13:12:31]  *** Contents of shared directory: ***
[2025-10-12 13:12:31] total 404476
[2025-10-12 13:12:31] -rw-r--r-- 2 boinc boinc 219374699 Oct 12 11:50 ATLAS.root_0
[2025-10-12 13:12:31] -rw-r--r-- 2 boinc boinc    569676 Oct 12 11:50 input.tar.gz
[2025-10-12 13:12:31] -rw-r--r-- 2 boinc boinc     15120 Oct 12 11:50 start_atlas.sh
[2025-10-12 13:12:31] -rw------- 1 boinc boinc 193201936 Oct 12 13:11 HITS.pool.root.1
[2025-10-12 13:12:31] -rw------- 1 boinc boinc   1003520 Oct 12 13:12 result.tar.gz
13:12:33 (2974388): run_atlas exited; CPU time 13887.860591
13:12:33 (2974388): called boinc_finish(0)

</stderr_txt>
]]>

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