Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:40:21 (3554477): wrapper (7.7.26015): starting
10:40:21 (3554477): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 10:40:21] Arguments: --nthreads 4
[2025-10-12 10:40:21] Threads: 4
[2025-10-12 10:40:21] Checking for CVMFS
[2025-10-12 10:40:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:40:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:40:21] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:40:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:40:21] 2.9.2.0 2165438 3929 97832 151613 3 57 31880059 36864000 0 130560 0 3610040 99.991 136409 796 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 10:40:21] CVMFS is ok
[2025-10-12 10:40:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:40:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 10:40:21] Further information can be found at the LHC@home message board.
[2025-10-12 10:40:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:40:21] Checking for apptainer binary...
[2025-10-12 10:40:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:40:21] Running /usr/bin/apptainer --version
[2025-10-12 10:40:21] apptainer version 1.4.1-1.1
[2025-10-12 10:40:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:40:21] thA305a
[2025-10-12 10:40:21] apptainer works
[2025-10-12 10:40:21] Set ATHENA_PROC_NUMBER=4
[2025-10-12 10:40:21] Set ATHENA_CORE_NUMBER=4
[2025-10-12 10:40:21] Starting ATLAS job with PandaID=6838453271
[2025-10-12 10:40:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 11:51:41]  *** The last 200 lines of the pilot log: ***
[2025-10-12 11:51:41] 2025-10-12 09:51:09,003 | INFO     | overall cleanup function is called
[2025-10-12 11:51:41] 2025-10-12 09:51:10,009 | INFO     | --- collectZombieJob: --- 10, [3564854]
[2025-10-12 11:51:41] 2025-10-12 09:51:10,010 | INFO     | zombie collector waiting for pid 3564854
[2025-10-12 11:51:41] 2025-10-12 09:51:10,010 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 11:51:41] 2025-10-12 09:51:10,010 | INFO     | collected zombie processes
[2025-10-12 11:51:41] 2025-10-12 09:51:10,010 | INFO     | will attempt to kill all subprocesses of pid=3564854
[2025-10-12 11:51:41] 2025-10-12 09:51:10,056 | INFO     | process IDs to be killed: [3564854] (in reverse order)
[2025-10-12 11:51:41] 2025-10-12 09:51:10,088 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 11:51:41] 2025-10-12 09:51:10,089 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 11:51:41] 2025-10-12 09:51:10,091 | INFO     | did not find any defunct processes belonging to 3564854
[2025-10-12 11:51:41] 2025-10-12 09:51:10,092 | INFO     | did not find any defunct processes belonging to 3564854
[2025-10-12 11:51:41] 2025-10-12 09:51:10,092 | INFO     | ready for new job
[2025-10-12 11:51:41] 2025-10-12 09:51:10,092 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 11:51:41] 2025-10-12 09:51:10,093 | INFO     | ***************************************
[2025-10-12 11:51:41] 2025-10-12 09:51:10,093 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 11:51:41] 2025-10-12 09:51:10,093 | INFO     | ***************************************
[2025-10-12 11:51:41] 2025-10-12 09:51:10,093 | INFO     | 
[2025-10-12 11:51:41] 2025-10-12 09:51:10,093 | INFO     | architecture information:
[2025-10-12 11:51:41] 2025-10-12 09:51:10,094 | INFO     | executing command: cat /etc/os-release
[2025-10-12 11:51:41] 2025-10-12 09:51:10,107 | INFO     | cat /etc/os-release:
[2025-10-12 11:51:41] NAME="CentOS Linux"
[2025-10-12 11:51:41] VERSION="7 (Core)"
[2025-10-12 11:51:41] ID="centos"
[2025-10-12 11:51:41] ID_LIKE="rhel fedora"
[2025-10-12 11:51:41] VERSION_ID="7"
[2025-10-12 11:51:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 11:51:41] ANSI_COLOR="0;31"
[2025-10-12 11:51:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 11:51:41] HOME_URL="https://www.centos.org/"
[2025-10-12 11:51:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 11:51:41] 
[2025-10-12 11:51:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 11:51:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 11:51:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 11:51:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 11:51:41] 
[2025-10-12 11:51:41] 2025-10-12 09:51:10,107 | INFO     | ***************************************
[2025-10-12 11:51:41] 2025-10-12 09:51:10,610 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 11:51:41] 2025-10-12 09:51:10,628 | INFO     | sufficient remaining disk space (327865597952 B)
[2025-10-12 11:51:41] 2025-10-12 09:51:10,628 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 11:51:41] 2025-10-12 09:51:10,629 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 11:51:41] 2025-10-12 09:51:10,629 | INFO     | update_server=False
[2025-10-12 11:51:41] 2025-10-12 09:51:10,629 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 11:51:41] 2025-10-12 09:51:10,629 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:51:41] 2025-10-12 09:51:10,629 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 11:51:41] 2025-10-12 09:51:10,687 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 11:51:41] 2025-10-12 09:51:10,688 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 11:51:41] 2025-10-12 09:51:10,688 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:51:41] 2025-10-12 09:51:10,688 | INFO     | will abort loop
[2025-10-12 11:51:41] 2025-10-12 09:51:11,125 | INFO     | all data control threads have been joined
[2025-10-12 11:51:41] 2025-10-12 09:51:11,634 | INFO     | [job] retrieve thread has finished
[2025-10-12 11:51:41] 2025-10-12 09:51:11,635 | INFO     | [job] queue monitor thread has finished
[2025-10-12 11:51:41] 2025-10-12 09:51:11,693 | INFO     | [job] job monitor thread has finished
[2025-10-12 11:51:41] 2025-10-12 09:51:11,835 | INFO     | all job control threads have been joined
[2025-10-12 11:51:41] 2025-10-12 09:51:11,948 | INFO     | [data] copytool_in thread has finished
[2025-10-12 11:51:41] 2025-10-12 09:51:12,027 | INFO     | all payload control threads have been joined
[2025-10-12 11:51:41] 2025-10-12 09:51:12,039 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 11:51:41] 2025-10-12 09:51:12,131 | INFO     | [data] control thread has finished
[2025-10-12 11:51:41] 2025-10-12 09:51:12,151 | INFO     | [payload] failed_post thread has finished
[2025-10-12 11:51:41] 2025-10-12 09:51:12,643 | INFO     | [payload] validate_post thread has finished
[2025-10-12 11:51:41] 2025-10-12 09:51:12,701 | INFO     | [job] validate thread has finished
[2025-10-12 11:51:41] 2025-10-12 09:51:12,840 | INFO     | [job] control thread has finished
[2025-10-12 11:51:41] 2025-10-12 09:51:12,849 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 11:51:41] 2025-10-12 09:51:12,910 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 11:51:41] 2025-10-12 09:51:13,033 | INFO     | [payload] control thread has finished
[2025-10-12 11:51:41] 2025-10-12 09:51:13,053 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 11:51:41] 2025-10-12 09:51:14,044 | INFO     | [data] copytool_out thread has finished
[2025-10-12 11:51:41] 2025-10-12 09:51:14,636 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 11:51:41] 2025-10-12 09:51:21,269 | INFO     | job.realtimelogging is not enabled
[2025-10-12 11:51:41] 2025-10-12 09:51:22,274 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 11:51:41] 2025-10-12 09:51:34,692 | INFO     | [monitor] cgroup control has ended
[2025-10-12 11:51:41] 2025-10-12 09:51:35,697 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140467282454336)>', '<ExcThread(monitor, started 140465831671552)>']
[2025-10-12 11:51:41] 2025-10-12 09:51:40,723 | INFO     | all workflow threads have been joined
[2025-10-12 11:51:41] 2025-10-12 09:51:40,723 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 11:51:41] 2025-10-12 09:51:40,724 | INFO     | traces error code: 0
[2025-10-12 11:51:41] 2025-10-12 09:51:40,724 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 11:51:41] 2025-10-12 09:51:41,541 | INFO     | PID=3558293 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 11:51:41] 2025-10-12 09:51:41,542 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 11:51:41] 2025-10-12 09:51:41,542 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 11:51:41] 2025-10-12 09:51:41,542 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 11:51:41] 2025-10-12 09:51:41,542 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 11:51:41] 2025-10-12 09:51:41,542 | INFO     | [monitor] control thread has ended
[2025-10-12 11:51:41] 2025-10-12 09:51:41,618 [wrapper] ==== pilot stdout END ====
[2025-10-12 11:51:41] 2025-10-12 09:51:41,622 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 11:51:41] 2025-10-12 09:51:41,626 [wrapper] pilotpid: 3558293
[2025-10-12 11:51:41] 2025-10-12 09:51:41,630 [wrapper] Pilot exit status: 0
[2025-10-12 11:51:41] 2025-10-12 09:51:41,642 [wrapper] pandaids: 6838453271
[2025-10-12 11:51:41] 2025-10-12 09:51:41,664 [wrapper] cleanup supervisor_pilot 3574774 3558294
[2025-10-12 11:51:41] 2025-10-12 09:51:41,668 [wrapper] Test setup, not cleaning
[2025-10-12 11:51:41] 2025-10-12 09:51:41,672 [wrapper] apfmon messages muted
[2025-10-12 11:51:41] 2025-10-12 09:51:41,676 [wrapper] ==== wrapper stdout END ====
[2025-10-12 11:51:41] 2025-10-12 09:51:41,680 [wrapper] ==== wrapper stderr END ====
[2025-10-12 11:51:41]  *** Error codes and diagnostics ***
[2025-10-12 11:51:41]     "exeErrorCode": 0,
[2025-10-12 11:51:41]     "exeErrorDiag": "",
[2025-10-12 11:51:41]     "pilotErrorCode": 0,
[2025-10-12 11:51:41]     "pilotErrorDiag": "",
[2025-10-12 11:51:41]  *** Listing of results directory ***
[2025-10-12 11:51:41] total 412556
[2025-10-12 11:51:41] -rw-r--r-- 1 boinc boinc    557409 Oct 11 16:01 pilot3.tar.gz
[2025-10-12 11:51:41] -rw-r--r-- 1 boinc boinc      5112 Oct 11 16:12 queuedata.json
[2025-10-12 11:51:41] -rwx------ 1 boinc boinc     36292 Oct 11 16:13 runpilot2-wrapper.sh
[2025-10-12 11:51:41] -rw-r--r-- 1 boinc boinc       100 Oct 12 10:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 11:51:41] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 10:40 run_atlas
[2025-10-12 11:51:41] -rw-r--r-- 1 boinc boinc       105 Oct 12 10:40 job.xml
[2025-10-12 11:51:41] -rw-r--r-- 2 boinc boinc 222550417 Oct 12 10:40 EVNT.46676267._002375.pool.root.1
[2025-10-12 11:51:41] drwxrwx--x 2 boinc boinc      4096 Oct 12 10:40 shared
[2025-10-12 11:51:41] -rw-r--r-- 2 boinc boinc    569681 Oct 12 10:40 input.tar.gz
[2025-10-12 11:51:41] -rw-r--r-- 2 boinc boinc     15120 Oct 12 10:40 start_atlas.sh
[2025-10-12 11:51:41] -rw-r--r-- 1 boinc boinc         0 Oct 12 10:40 boinc_setup_complete
[2025-10-12 11:51:41] -rw-r--r-- 1 boinc boinc      6377 Oct 12 10:40 init_data.xml
[2025-10-12 11:51:41] -rw-r--r-- 1 boinc boinc         0 Oct 12 10:40 boinc_lockfile
[2025-10-12 11:51:41] -rw-r--r-- 1 boinc boinc      2549 Oct 12 10:40 pandaJob.out
[2025-10-12 11:51:41] -rw------- 1 boinc boinc    975520 Oct 12 10:40 agis_schedconf.cvmfs.json
[2025-10-12 11:51:41] -rw------- 1 boinc boinc   1560580 Oct 12 10:40 agis_ddmendpoints.agis.ALL.json
[2025-10-12 11:51:41] drwx------ 5 boinc boinc      4096 Oct 12 10:40 pilot3
[2025-10-12 11:51:41] -rw------- 1 boinc boinc 194254930 Oct 12 11:50 HITS.46676269._059131.pool.root.1
[2025-10-12 11:51:41] -rw-r--r-- 1 boinc boinc       530 Oct 12 11:50 boinc_task_state.xml
[2025-10-12 11:51:41] -rw------- 1 boinc boinc        95 Oct 12 11:50 pilot_heartbeat.json
[2025-10-12 11:51:41] -rw------- 1 boinc boinc      1022 Oct 12 11:51 memory_monitor_summary.json
[2025-10-12 11:51:41] -rw------- 1 boinc boinc    253506 Oct 12 11:51 log.46676269._059131.job.log.tgz.1
[2025-10-12 11:51:41] -rw------- 1 boinc boinc      7766 Oct 12 11:51 heartbeat.json
[2025-10-12 11:51:41] -rw-r--r-- 1 boinc boinc      8192 Oct 12 11:51 boinc_mmap_file
[2025-10-12 11:51:41] -rw-r--r-- 1 boinc boinc        27 Oct 12 11:51 wrapper_checkpoint.txt
[2025-10-12 11:51:41] -rw------- 1 boinc boinc       747 Oct 12 11:51 pilotlog.txt
[2025-10-12 11:51:41] -rw------- 1 boinc boinc    630541 Oct 12 11:51 log.46676269._059131.job.log.1
[2025-10-12 11:51:41] -rw------- 1 boinc boinc       357 Oct 12 11:51 output.list
[2025-10-12 11:51:41] -rw-r--r-- 1 boinc boinc       620 Oct 12 11:51 runtime_log
[2025-10-12 11:51:41] -rw------- 1 boinc boinc    901120 Oct 12 11:51 result.tar.gz
[2025-10-12 11:51:41] -rw-r--r-- 1 boinc boinc      8782 Oct 12 11:51 runtime_log.err
[2025-10-12 11:51:41] -rw------- 1 boinc boinc       659 Oct 12 11:51 5JFNDmtWpR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmK3RMDm8aHOwm.diag
[2025-10-12 11:51:41] -rw-r--r-- 1 boinc boinc     11032 Oct 12 11:51 stderr.txt
[2025-10-12 11:51:41] HITS file was successfully produced:
[2025-10-12 11:51:41] -rw------- 1 boinc boinc 194254930 Oct 12 11:50 shared/HITS.pool.root.1
[2025-10-12 11:51:41]  *** Contents of shared directory: ***
[2025-10-12 11:51:41] total 408504
[2025-10-12 11:51:41] -rw-r--r-- 2 boinc boinc 222550417 Oct 12 10:40 ATLAS.root_0
[2025-10-12 11:51:41] -rw-r--r-- 2 boinc boinc    569681 Oct 12 10:40 input.tar.gz
[2025-10-12 11:51:41] -rw-r--r-- 2 boinc boinc     15120 Oct 12 10:40 start_atlas.sh
[2025-10-12 11:51:41] -rw------- 1 boinc boinc 194254930 Oct 12 11:50 HITS.pool.root.1
[2025-10-12 11:51:41] -rw------- 1 boinc boinc    901120 Oct 12 11:51 result.tar.gz
11:51:43 (3554477): run_atlas exited; CPU time 15843.213496
11:51:43 (3554477): called boinc_finish(0)

</stderr_txt>
]]>

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