Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:15:57 (3057): wrapper (7.7.26015): starting
21:15:57 (3057): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 21:15:57] Arguments: --nthreads 12
[2025-10-11 21:15:57] Threads: 12
[2025-10-11 21:15:57] Checking for CVMFS
[2025-10-11 21:15:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 21:15:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 21:15:57] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 21:15:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 21:15:57] 2.11.2.0 2916 222163 98056 151601 1 59 18603538 20275200 1 130560 1 107547997 99.984 13386728 12488 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 21:15:57] CVMFS is ok
[2025-10-11 21:15:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 21:15:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 21:15:57] Further information can be found at the LHC@home message board.
[2025-10-11 21:15:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 21:15:57] Checking for apptainer binary...
[2025-10-11 21:15:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 21:15:57] Running /usr/bin/apptainer --version
[2025-10-11 21:15:57] apptainer version 1.3.2-1.el7
[2025-10-11 21:15:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 21:15:58] c-205-23.aglt2.org
[2025-10-11 21:15:58] apptainer works
[2025-10-11 21:15:58] Set ATHENA_PROC_NUMBER=12
[2025-10-11 21:15:58] Set ATHENA_CORE_NUMBER=12
[2025-10-11 21:15:58] Starting ATLAS job with PandaID=6838851876
[2025-10-11 21:15:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 22:27:26]  *** The last 200 lines of the pilot log: ***
[2025-10-11 22:27:26]  status=None
[2025-10-11 22:27:26]  status_code=0
[2025-10-11 22:27:26]  storage_token=
[2025-10-11 22:27:26]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6838851876/log.46676269._063971.job.log.tgz.1
[2025-10-11 22:27:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bb/7a/log.46676269._063971.job.log.tgz.1
[2025-10-11 22:27:26]  workdir=None
[2025-10-11 22:27:26] ]
[2025-10-11 22:27:26] 2025-10-12 02:26:37,756 | INFO     | transferring file log.46676269._063971.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6838851876/log.46676269._063971.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 22:27:26] 2025-10-12 02:26:37,756 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6838851876/log.46676269._063971.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._063971.job
[2025-10-11 22:27:26] 2025-10-12 02:26:37,778 | INFO     | adding to output.list: log.46676269._063971.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bb/7a/log.46676269._063971.job.log.tg
[2025-10-11 22:27:26] 2025-10-12 02:26:37,779 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 22:27:26] 2025-10-12 02:26:37,779 | INFO     | summary of transferred files:
[2025-10-11 22:27:26] 2025-10-12 02:26:37,780 | INFO     |  -- lfn=log.46676269._063971.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 22:27:26] 2025-10-12 02:26:37,780 | INFO     | stage-out finished correctly
[2025-10-11 22:27:26] 2025-10-12 02:26:37,863 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 22:27:26] 2025-10-12 02:26:38,992 | WARNING  | process 13145 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 22:27:26] 2025-10-12 02:26:38,992 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838851876/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 22:27:26] 2025-10-12 02:26:39,080 | INFO     | number of running child processes to parent process 13145: 1
[2025-10-11 22:27:26] 2025-10-12 02:26:39,080 | INFO     | maximum number of monitored processes: 6
[2025-10-11 22:27:26] 2025-10-12 02:26:39,181 | INFO     | time since job start (4225s) is within the limit (172800.0s)
[2025-10-11 22:27:26] 2025-10-12 02:26:39,661 | INFO     | job 6838851876 has state=finished
[2025-10-11 22:27:26] 2025-10-12 02:26:39,661 | INFO     | preparing for final server update for job 6838851876 in state='finished'
[2025-10-11 22:27:26] 2025-10-12 02:26:39,661 | INFO     | this job has now completed (state=finished)
[2025-10-11 22:27:26] 2025-10-12 02:26:39,662 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 22:27:26] 2025-10-12 02:26:39,662 | INFO     | log transfer has been attempted: DONE
[2025-10-11 22:27:26] 2025-10-12 02:26:39,662 | INFO     | job 6838851876 has finished - writing final server update
[2025-10-11 22:27:26] 2025-10-12 02:26:39,662 | INFO     | total number of processed events: 400 (read)
[2025-10-11 22:27:26] 2025-10-12 02:26:39,663 | INFO     | executing command: lscpu
[2025-10-11 22:27:26] 2025-10-12 02:26:39,689 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 22:27:26] 2025-10-12 02:26:41,186 | INFO     | time since job start (4227s) is within the limit (172800.0s)
[2025-10-11 22:27:26] 2025-10-12 02:26:41,583 | INFO     | monitor loop #314: job 0:6838851876 is in state 'finished'
[2025-10-11 22:27:26] 2025-10-12 02:26:41,583 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 22:27:26] 2025-10-12 02:26:43,192 | INFO     | time since job start (4229s) is within the limit (172800.0s)
[2025-10-11 22:27:26] 2025-10-12 02:26:44,085 | INFO     | monitor loop #315: job 0:6838851876 is in state 'finished'
[2025-10-11 22:27:26] 2025-10-12 02:26:44,086 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 22:27:26] 2025-10-12 02:26:44,306 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-11 22:27:26] 2025-10-12 02:26:44,310 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-11 22:27:26] 2025-10-12 02:26:44,311 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838851876/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 22:27:26] 2025-10-12 02:26:44,312 | INFO     | extracted standard info from prmon json
[2025-10-11 22:27:26] 2025-10-12 02:26:44,312 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 22:27:26] 2025-10-12 02:26:44,312 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 22:27:26] 2025-10-12 02:26:44,312 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 22:27:26] 2025-10-12 02:26:44,313 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 22:27:26] 2025-10-12 02:26:44,314 | INFO     | fitting pss+swap vs Time
[2025-10-11 22:27:26] 2025-10-12 02:26:44,314 | INFO     | sum of square deviations: 73882315.5
[2025-10-11 22:27:26] 2025-10-12 02:26:44,314 | INFO     | sum of deviations: -2064715068.0000002
[2025-10-11 22:27:26] 2025-10-12 02:26:44,315 | INFO     | mean x: 1760233968.5
[2025-10-11 22:27:26] 2025-10-12 02:26:44,315 | INFO     | mean y: 2785097.5161290322
[2025-10-11 22:27:26] 2025-10-12 02:26:44,315 | INFO     | -- intersect: 49194280699.29363
[2025-10-11 22:27:26] 2025-10-12 02:26:44,315 | INFO     | intersect: 49194280699.29363
[2025-10-11 22:27:26] 2025-10-12 02:26:44,315 | INFO     | chi2: 0.10709440283663456
[2025-10-11 22:27:26] 2025-10-12 02:26:44,315 | INFO     | -- intersect: 49194280699.29363
[2025-10-11 22:27:26] 2025-10-12 02:26:44,315 | INFO     | current memory leak: -27.95 B/s (using 62 data points, chi2=0.11)
[2025-10-11 22:27:26] 2025-10-12 02:26:44,316 | INFO     | could have reported an average CPU frequency of 2039 MHz (6 samples)
[2025-10-11 22:27:26] 2025-10-12 02:26:44,316 | INFO     | ..............................
[2025-10-11 22:27:26] 2025-10-12 02:26:44,316 | INFO     | . Timing measurements:
[2025-10-11 22:27:26] 2025-10-12 02:26:44,316 | INFO     | . get job = 0 s
[2025-10-11 22:27:26] 2025-10-12 02:26:44,316 | INFO     | . initial setup = 2 s
[2025-10-11 22:27:26] 2025-10-12 02:26:44,316 | INFO     | . payload setup = 7 s
[2025-10-11 22:27:26] 2025-10-12 02:26:44,316 | INFO     | . stage-in = 0 s
[2025-10-11 22:27:26] 2025-10-12 02:26:44,316 | INFO     | . payload execution = 4196 s
[2025-10-11 22:27:26] 2025-10-12 02:26:44,317 | INFO     | . stage-out = 0 s
[2025-10-11 22:27:26] 2025-10-12 02:26:44,317 | INFO     | . log creation = 0 s
[2025-10-11 22:27:26] 2025-10-12 02:26:44,317 | INFO     | ..............................
[2025-10-11 22:27:26] 2025-10-12 02:26:44,858 | INFO     | 
[2025-10-11 22:27:26] 2025-10-12 02:26:44,859 | INFO     | job summary report
[2025-10-11 22:27:26] 2025-10-12 02:26:44,859 | INFO     | --------------------------------------------------
[2025-10-11 22:27:26] 2025-10-12 02:26:44,859 | INFO     | PanDA job id: 6838851876
[2025-10-11 22:27:26] 2025-10-12 02:26:44,859 | INFO     | task id: 46676269
[2025-10-11 22:27:26] 2025-10-12 02:26:44,859 | INFO     | errors: (none)
[2025-10-11 22:27:26] 2025-10-12 02:26:44,859 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 22:27:26] 2025-10-12 02:26:44,860 | INFO     | pilot state: finished 
[2025-10-11 22:27:26] 2025-10-12 02:26:44,860 | INFO     | transexitcode: 0
[2025-10-11 22:27:26] 2025-10-12 02:26:44,860 | INFO     | exeerrorcode: 0
[2025-10-11 22:27:26] 2025-10-12 02:26:44,860 | INFO     | exeerrordiag: 
[2025-10-11 22:27:26] 2025-10-12 02:26:44,860 | INFO     | exitcode: 0
[2025-10-11 22:27:26] 2025-10-12 02:26:44,860 | INFO     | exitmsg: OK
[2025-10-11 22:27:26] 2025-10-12 02:26:44,860 | INFO     | cpuconsumptiontime: 44706 s
[2025-10-11 22:27:26] 2025-10-12 02:26:44,860 | INFO     | nevents: 400
[2025-10-11 22:27:26] 2025-10-12 02:26:44,860 | INFO     | neventsw: 0
[2025-10-11 22:27:26] 2025-10-12 02:26:44,861 | INFO     | pid: 13145
[2025-10-11 22:27:26] 2025-10-12 02:26:44,861 | INFO     | pgrp: 13145
[2025-10-11 22:27:26] 2025-10-12 02:26:44,861 | INFO     | corecount: 12
[2025-10-11 22:27:26] 2025-10-12 02:26:44,861 | INFO     | event service: False
[2025-10-11 22:27:26] 2025-10-12 02:26:44,861 | INFO     | sizes: {0: 2348635, 1: 2348834, 6: 2349096, 12: 2349124, 4207: 2375021, 4208: 2384203, 4214: 2384341}
[2025-10-11 22:27:26] 2025-10-12 02:26:44,861 | INFO     | --------------------------------------------------
[2025-10-11 22:27:26] 2025-10-12 02:26:44,861 | INFO     | 
[2025-10-11 22:27:26] 2025-10-12 02:26:44,861 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 22:27:26] 2025-10-12 02:26:44,885 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 22:27:26] 2025-10-12 02:26:44,885 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 22:27:26] 2025-10-12 02:26:44,885 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 22:27:26] 2025-10-12 02:26:44,885 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 22:27:26] 2025-10-12 02:26:44,886 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 22:27:26] 2025-10-12 02:26:44,886 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 22:27:26] 2025-10-12 02:26:44,886 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 22:27:26] 2025-10-12 02:26:44,886 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 22:27:26] 2025-10-12 02:26:44,886 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 22:27:26] 2025-10-12 02:26:44,886 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 22:27:26] 2025-10-12 02:26:44,887 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 22:27:26] 2025-10-12 02:26:44,887 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 22:27:26] 2025-10-12 02:26:44,887 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 22:27:26] 2025-10-12 02:26:44,887 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 22:27:26] 2025-10-12 02:26:44,887 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 22:27:26] 2025-10-12 02:26:44,887 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 22:27:26] 2025-10-12 02:26:44,888 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 22:27:26] 2025-10-12 02:26:44,888 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 22:27:26] 2025-10-12 02:26:44,888 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 22:27:26] 2025-10-12 02:26:44,888 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 22:27:26] 2025-10-12 02:26:44,888 | INFO     | job 6838851876 has completed (purged errors)
[2025-10-11 22:27:26] 2025-10-12 02:26:44,888 | INFO     | overall cleanup function is called
[2025-10-11 22:27:26] 2025-10-12 02:26:45,896 | INFO     | --- collectZombieJob: --- 10, [13145]
[2025-10-11 22:27:26] 2025-10-12 02:26:45,897 | INFO     | zombie collector waiting for pid 13145
[2025-10-11 22:27:26] 2025-10-12 02:26:45,897 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 22:27:26] 2025-10-12 02:26:45,897 | INFO     | collected zombie processes
[2025-10-11 22:27:26] 2025-10-12 02:26:45,897 | INFO     | will attempt to kill all subprocesses of pid=13145
[2025-10-11 22:27:26] 2025-10-12 02:26:45,987 | INFO     | process IDs to be killed: [13145] (in reverse order)
[2025-10-11 22:27:26] 2025-10-12 02:26:46,038 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 22:27:26] 2025-10-12 02:26:46,039 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 22:27:26] 2025-10-12 02:26:46,042 | INFO     | did not find any defunct processes belonging to 13145
[2025-10-11 22:27:26] 2025-10-12 02:26:46,046 | INFO     | did not find any defunct processes belonging to 13145
[2025-10-11 22:27:26] 2025-10-12 02:26:46,046 | INFO     | ready for new job
[2025-10-11 22:27:26] 2025-10-12 02:26:46,046 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 22:27:26] 2025-10-12 02:26:46,048 | INFO     | ***************************************
[2025-10-11 22:27:26] 2025-10-12 02:26:46,048 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 22:27:26] 2025-10-12 02:26:46,048 | INFO     | ***************************************
[2025-10-11 22:27:26] 2025-10-12 02:26:46,048 | INFO     | 
[2025-10-11 22:27:26] 2025-10-12 02:26:46,049 | INFO     | architecture information:
[2025-10-11 22:27:26] 2025-10-12 02:26:46,050 | INFO     | executing command: cat /etc/os-release
[2025-10-11 22:27:26] 2025-10-12 02:26:46,065 | INFO     | cat /etc/os-release:
[2025-10-11 22:27:26] NAME="CentOS Linux"
[2025-10-11 22:27:26] VERSION="7 (Core)"
[2025-10-11 22:27:26] ID="centos"
[2025-10-11 22:27:26] ID_LIKE="rhel fedora"
[2025-10-11 22:27:26] VERSION_ID="7"
[2025-10-11 22:27:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 22:27:26] ANSI_COLOR="0;31"
[2025-10-11 22:27:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 22:27:26] HOME_URL="https://www.centos.org/"
[2025-10-11 22:27:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 22:27:26] 
[2025-10-11 22:27:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 22:27:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 22:27:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 22:27:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 22:27:26] 
[2025-10-11 22:27:26] 2025-10-12 02:26:46,065 | INFO     | ***************************************
[2025-10-11 22:27:26] 2025-10-12 02:26:46,568 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 22:27:26] 2025-10-12 02:26:46,585 | INFO     | sufficient remaining disk space (29374808064 B)
[2025-10-11 22:27:26] 2025-10-12 02:26:46,585 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 22:27:26] 2025-10-12 02:26:46,585 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 22:27:26] 2025-10-12 02:26:46,586 | INFO     | update_server=False
[2025-10-11 22:27:26] 2025-10-12 02:26:46,586 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 22:27:26] 2025-10-12 02:26:46,586 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 22:27:26] 2025-10-12 02:26:46,589 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 22:27:26] 2025-10-12 02:26:46,589 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 22:27:26] 2025-10-12 02:26:46,589 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:27:26] 2025-10-12 02:26:46,589 | INFO     | will abort loop
[2025-10-11 22:27:26] 2025-10-12 02:26:47,095 | INFO     | all data control threads have been joined
[2025-10-11 22:27:26] 2025-10-12 02:26:47,591 | INFO     | [job] job monitor thread has finished
[2025-10-11 22:27:26] 2025-10-12 02:26:47,591 | INFO     | [job] retrieve thread has finished
[2025-10-11 22:27:26] 2025-10-12 02:26:47,646 | INFO     | [payload] validate_post thread has finished
[2025-10-11 22:27:26] 2025-10-12 02:26:47,710 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 22:27:26] 2025-10-12 02:26:47,786 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 22:27:26] 2025-10-12 02:26:47,798 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 22:27:26] 2025-10-12 02:26:47,856 | INFO     | all payload control threads have been joined
[2025-10-11 22:27:26] 2025-10-12 02:26:47,903 | INFO     | all job control threads have been joined
[2025-10-11 22:27:26] 2025-10-12 02:26:47,957 | INFO     | [payload] failed_post thread has finished
[2025-10-11 22:27:26] 2025-10-12 02:26:48,100 | INFO     | [data] control thread has finished
[2025-10-11 22:27:26] 2025-10-12 02:26:48,295 | INFO     | [data] copytool_in thread has finished
[2025-10-11 22:27:26] 2025-10-12 02:26:48,451 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 22:27:26] 2025-10-12 02:26:48,468 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 22:27:26] 2025-10-12 02:26:48,592 | INFO     | [data] copytool_out thread has finished
[2025-10-11 22:27:26] 2025-10-12 02:26:48,862 | INFO     | [payload] control thread has finished
[2025-10-11 22:27:26] 2025-10-12 02:26:48,908 | INFO     | [job] control thread has finished
[2025-10-11 22:27:26] 2025-10-12 02:26:48,994 | INFO     | [job] validate thread has finished
[2025-10-11 22:27:26] 2025-10-12 02:26:49,410 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:27:26] 2025-10-12 02:26:50,415 | INFO     | [job] queue monitor thread has finished
[2025-10-11 22:27:26] 2025-10-12 02:26:52,456 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 22:27:26] 2025-10-12 02:27:16,385 | INFO     | PID=6783 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-11 22:27:26] 2025-10-12 02:27:16,392 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 22:27:26] 2025-10-12 02:27:16,392 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 22:27:26] 2025-10-12 02:27:16,392 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 22:27:26] 2025-10-12 02:27:20,149 | INFO     | [monitor] cgroup control has ended
[2025-10-11 22:27:26] 2025-10-12 02:27:21,311 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140147890661184)>', '<ExcThread(monitor, started 140147282646784)>']
[2025-10-11 22:27:26] 2025-10-12 02:27:21,411 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 22:27:26] 2025-10-12 02:27:21,411 | INFO     | [monitor] control thread has ended
[2025-10-11 22:27:26] 2025-10-12 02:27:26,316 | INFO     | all workflow threads have been joined
[2025-10-11 22:27:26] 2025-10-12 02:27:26,316 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 22:27:26] 2025-10-12 02:27:26,316 | INFO     | traces error code: 0
[2025-10-11 22:27:26] 2025-10-12 02:27:26,317 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 22:27:26] 2025-10-12 02:27:26,410 [wrapper] ==== pilot stdout END ====
[2025-10-11 22:27:26] 2025-10-12 02:27:26,414 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 22:27:26] 2025-10-12 02:27:26,418 [wrapper] pilotpid: 6783
[2025-10-11 22:27:26] 2025-10-12 02:27:26,422 [wrapper] Pilot exit status: 0
[2025-10-11 22:27:26] 2025-10-12 02:27:26,438 [wrapper] pandaids: 6838851876
[2025-10-11 22:27:26] 2025-10-12 02:27:26,479 [wrapper] cleanup supervisor_pilot 26015 6784
[2025-10-11 22:27:26] 2025-10-12 02:27:26,483 [wrapper] Test setup, not cleaning
[2025-10-11 22:27:26] 2025-10-12 02:27:26,487 [wrapper] apfmon messages muted
[2025-10-11 22:27:26] 2025-10-12 02:27:26,491 [wrapper] ==== wrapper stdout END ====
[2025-10-11 22:27:26] 2025-10-12 02:27:26,495 [wrapper] ==== wrapper stderr END ====
[2025-10-11 22:27:26]  *** Error codes and diagnostics ***
[2025-10-11 22:27:26]     "exeErrorCode": 0,
[2025-10-11 22:27:26]     "exeErrorDiag": "",
[2025-10-11 22:27:26]     "pilotErrorCode": 0,
[2025-10-11 22:27:26]     "pilotErrorDiag": "",
[2025-10-11 22:27:26]  *** Listing of results directory ***
[2025-10-11 22:27:26] total 404724
[2025-10-11 22:27:26] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 15:43 pilot3.tar.gz
[2025-10-11 22:27:26] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 15:53 queuedata.json
[2025-10-11 22:27:26] -rwx------ 1 boincer umatlas     36292 Oct 11 15:53 runpilot2-wrapper.sh
[2025-10-11 22:27:26] -rw-r--r-- 1 boincer umatlas       100 Oct 11 21:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 22:27:26] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 21:15 run_atlas
[2025-10-11 22:27:26] -rw-r--r-- 1 boincer umatlas       105 Oct 11 21:15 job.xml
[2025-10-11 22:27:26] -rw-r--r-- 2 boincer umatlas 219002807 Oct 11 21:15 EVNT.46676267._002571.pool.root.1
[2025-10-11 22:27:26] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 21:15 start_atlas.sh
[2025-10-11 22:27:26] drwxrwx--x 2 boincer umatlas      4096 Oct 11 21:15 shared
[2025-10-11 22:27:26] -rw-r--r-- 2 boincer umatlas    569678 Oct 11 21:15 input.tar.gz
[2025-10-11 22:27:26] -rw-r--r-- 1 boincer umatlas         0 Oct 11 21:15 boinc_lockfile
[2025-10-11 22:27:26] -rw-r--r-- 1 boincer umatlas      2549 Oct 11 21:15 pandaJob.out
[2025-10-11 22:27:26] -rw------- 1 boincer umatlas    975496 Oct 11 21:16 agis_schedconf.cvmfs.json
[2025-10-11 22:27:26] -rw------- 1 boincer umatlas   1560580 Oct 11 21:16 agis_ddmendpoints.agis.ALL.json
[2025-10-11 22:27:26] drwx------ 5 boincer umatlas      4096 Oct 11 21:16 pilot3
[2025-10-11 22:27:26] -rw-r--r-- 1 boincer umatlas      5952 Oct 11 22:21 init_data.xml
[2025-10-11 22:27:26] -rw------- 1 boincer umatlas 189540312 Oct 11 22:26 HITS.46676269._063971.pool.root.1
[2025-10-11 22:27:26] -rw-r--r-- 1 boincer umatlas       529 Oct 11 22:26 boinc_task_state.xml
[2025-10-11 22:27:26] -rw------- 1 boincer umatlas      1050 Oct 11 22:26 memory_monitor_summary.json
[2025-10-11 22:27:26] -rw------- 1 boincer umatlas    380364 Oct 11 22:26 log.46676269._063971.job.log.tgz.1
[2025-10-11 22:27:26] -rw------- 1 boincer umatlas      7857 Oct 11 22:26 heartbeat.json
[2025-10-11 22:27:26] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 22:27 boinc_mmap_file
[2025-10-11 22:27:26] -rw-r--r-- 1 boincer umatlas        27 Oct 11 22:27 wrapper_checkpoint.txt
[2025-10-11 22:27:26] -rw------- 1 boincer umatlas        95 Oct 11 22:27 pilot_heartbeat.json
[2025-10-11 22:27:26] -rw------- 1 boincer umatlas      4931 Oct 11 22:27 pilotlog.txt
[2025-10-11 22:27:26] -rw------- 1 boincer umatlas    616791 Oct 11 22:27 log.46676269._063971.job.log.1
[2025-10-11 22:27:26] -rw------- 1 boincer umatlas       357 Oct 11 22:27 output.list
[2025-10-11 22:27:26] -rw-r--r-- 1 boincer umatlas       620 Oct 11 22:27 runtime_log
[2025-10-11 22:27:26] -rw------- 1 boincer umatlas   1013760 Oct 11 22:27 result.tar.gz
[2025-10-11 22:27:26] -rw-r--r-- 1 boincer umatlas      8705 Oct 11 22:27 runtime_log.err
[2025-10-11 22:27:26] -rw------- 1 boincer umatlas       659 Oct 11 22:27 jo1NDmjpuR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmqThNDmvUstPn.diag
[2025-10-11 22:27:26] -rw-r--r-- 1 boincer umatlas     22009 Oct 11 22:27 stderr.txt
[2025-10-11 22:27:26] HITS file was successfully produced:
[2025-10-11 22:27:26] -rw------- 1 boincer umatlas 189540312 Oct 11 22:26 shared/HITS.pool.root.1
[2025-10-11 22:27:26]  *** Contents of shared directory: ***
[2025-10-11 22:27:26] total 400544
[2025-10-11 22:27:26] -rw-r--r-- 2 boincer umatlas 219002807 Oct 11 21:15 ATLAS.root_0
[2025-10-11 22:27:26] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 21:15 start_atlas.sh
[2025-10-11 22:27:26] -rw-r--r-- 2 boincer umatlas    569678 Oct 11 21:15 input.tar.gz
[2025-10-11 22:27:26] -rw------- 1 boincer umatlas 189540312 Oct 11 22:26 HITS.pool.root.1
[2025-10-11 22:27:26] -rw------- 1 boincer umatlas   1013760 Oct 11 22:27 result.tar.gz
22:27:28 (3057): run_atlas exited; CPU time 44672.129304
22:27:28 (3057): called boinc_finish(0)

</stderr_txt>
]]>

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