Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:06:47 (25109): wrapper (7.7.26015): starting
21:06:47 (25109): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 21:06:47] Arguments: --nthreads 12
[2025-10-11 21:06:47] Threads: 12
[2025-10-11 21:06:47] Checking for CVMFS
[2025-10-11 21:06:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 21:06:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 21:06:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 21:06:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 21:06:47] 2.11.2.0 2987 222154 97584 151601 2 59 13773961 20275201 1 130560 1 107766420 99.984 13368080 12214 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 21:06:47] CVMFS is ok
[2025-10-11 21:06:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 21:06:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 21:06:47] Further information can be found at the LHC@home message board.
[2025-10-11 21:06:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 21:06:47] Checking for apptainer binary...
[2025-10-11 21:06:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 21:06:47] Running /usr/bin/apptainer --version
[2025-10-11 21:06:47] apptainer version 1.3.2-1.el7
[2025-10-11 21:06:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 21:06:49] c-205-19.aglt2.org
[2025-10-11 21:06:49] apptainer works
[2025-10-11 21:06:49] Set ATHENA_PROC_NUMBER=12
[2025-10-11 21:06:49] Set ATHENA_CORE_NUMBER=12
[2025-10-11 21:06:49] Starting ATLAS job with PandaID=6838851757
[2025-10-11 21:06:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 22:17:17]  *** The last 200 lines of the pilot log: ***
[2025-10-11 22:17:17]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-11 22:17:17]  replicas=None
[2025-10-11 22:17:17]  scope=mc23_13p6TeV
[2025-10-11 22:17:17]  status=None
[2025-10-11 22:17:17]  status_code=0
[2025-10-11 22:17:17]  storage_token=
[2025-10-11 22:17:17]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6838851757/log.46676269._063930.job.log.tgz.1
[2025-10-11 22:17:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9f/65/log.46676269._063930.job.log.tgz.1
[2025-10-11 22:17:17]  workdir=None
[2025-10-11 22:17:17] ]
[2025-10-11 22:17:17] 2025-10-12 02:16:25,176 | INFO     | transferring file log.46676269._063930.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6838851757/log.46676269._063930.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 22:17:17] 2025-10-12 02:16:25,176 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6838851757/log.46676269._063930.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._063930.job
[2025-10-11 22:17:17] 2025-10-12 02:16:25,200 | INFO     | adding to output.list: log.46676269._063930.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9f/65/log.46676269._063930.job.log.tg
[2025-10-11 22:17:17] 2025-10-12 02:16:25,201 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 22:17:17] 2025-10-12 02:16:25,201 | INFO     | summary of transferred files:
[2025-10-11 22:17:17] 2025-10-12 02:16:25,201 | INFO     |  -- lfn=log.46676269._063930.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 22:17:17] 2025-10-12 02:16:25,201 | INFO     | stage-out finished correctly
[2025-10-11 22:17:17] 2025-10-12 02:16:25,334 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 22:17:17] 2025-10-12 02:16:26,855 | INFO     | time since job start (4162s) is within the limit (172800.0s)
[2025-10-11 22:17:17] 2025-10-12 02:16:26,886 | INFO     | job 6838851757 has state=finished
[2025-10-11 22:17:17] 2025-10-12 02:16:26,886 | INFO     | preparing for final server update for job 6838851757 in state='finished'
[2025-10-11 22:17:17] 2025-10-12 02:16:26,887 | INFO     | this job has now completed (state=finished)
[2025-10-11 22:17:17] 2025-10-12 02:16:26,887 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 22:17:17] 2025-10-12 02:16:26,887 | INFO     | log transfer has been attempted: DONE
[2025-10-11 22:17:17] 2025-10-12 02:16:26,887 | INFO     | job 6838851757 has finished - writing final server update
[2025-10-11 22:17:17] 2025-10-12 02:16:26,888 | INFO     | total number of processed events: 400 (read)
[2025-10-11 22:17:17] 2025-10-12 02:16:26,889 | INFO     | executing command: lscpu
[2025-10-11 22:17:17] 2025-10-12 02:16:26,916 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 22:17:17] 2025-10-12 02:16:27,769 | WARNING  | process 2887 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 22:17:17] 2025-10-12 02:16:27,769 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838851757/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 22:17:17] 2025-10-12 02:16:27,858 | INFO     | number of running child processes to parent process 2887: 1
[2025-10-11 22:17:17] 2025-10-12 02:16:27,858 | INFO     | maximum number of monitored processes: 6
[2025-10-11 22:17:17] 2025-10-12 02:16:28,860 | INFO     | time since job start (4164s) is within the limit (172800.0s)
[2025-10-11 22:17:17] 2025-10-12 02:16:30,359 | INFO     | monitor loop #310: job 0:6838851757 is in state 'finished'
[2025-10-11 22:17:17] 2025-10-12 02:16:30,359 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 22:17:17] 2025-10-12 02:16:30,865 | INFO     | time since job start (4166s) is within the limit (172800.0s)
[2025-10-11 22:17:17] 2025-10-12 02:16:31,609 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-11 22:17:17] 2025-10-12 02:16:31,613 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-11 22:17:17] 2025-10-12 02:16:31,616 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838851757/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 22:17:17] 2025-10-12 02:16:31,617 | INFO     | extracted standard info from prmon json
[2025-10-11 22:17:17] 2025-10-12 02:16:31,617 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 22:17:17] 2025-10-12 02:16:31,617 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 22:17:17] 2025-10-12 02:16:31,617 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 22:17:17] 2025-10-12 02:16:31,617 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 22:17:17] 2025-10-12 02:16:31,619 | INFO     | fitting pss+swap vs Time
[2025-10-11 22:17:17] 2025-10-12 02:16:31,619 | INFO     | sum of square deviations: 70364110.0
[2025-10-11 22:17:17] 2025-10-12 02:16:31,619 | INFO     | sum of deviations: -1522328871.0
[2025-10-11 22:17:17] 2025-10-12 02:16:31,619 | INFO     | mean x: 1760233389.0
[2025-10-11 22:17:17] 2025-10-12 02:16:31,619 | INFO     | mean y: 2693467.1147540985
[2025-10-11 22:17:17] 2025-10-12 02:16:31,619 | INFO     | -- intersect: 38085376638.590576
[2025-10-11 22:17:17] 2025-10-12 02:16:31,620 | INFO     | intersect: 38085376638.590576
[2025-10-11 22:17:17] 2025-10-12 02:16:31,620 | INFO     | chi2: 0.029387961124648896
[2025-10-11 22:17:17] 2025-10-12 02:16:31,620 | INFO     | -- intersect: 38085376638.590576
[2025-10-11 22:17:17] 2025-10-12 02:16:31,620 | INFO     | current memory leak: -21.64 B/s (using 61 data points, chi2=0.03)
[2025-10-11 22:17:17] 2025-10-12 02:16:31,620 | INFO     | could have reported an average CPU frequency of 2034 MHz (6 samples)
[2025-10-11 22:17:17] 2025-10-12 02:16:31,620 | INFO     | ..............................
[2025-10-11 22:17:17] 2025-10-12 02:16:31,621 | INFO     | . Timing measurements:
[2025-10-11 22:17:17] 2025-10-12 02:16:31,621 | INFO     | . get job = 0 s
[2025-10-11 22:17:17] 2025-10-12 02:16:31,621 | INFO     | . initial setup = 2 s
[2025-10-11 22:17:17] 2025-10-12 02:16:31,621 | INFO     | . payload setup = 7 s
[2025-10-11 22:17:17] 2025-10-12 02:16:31,621 | INFO     | . stage-in = 0 s
[2025-10-11 22:17:17] 2025-10-12 02:16:31,621 | INFO     | . payload execution = 4132 s
[2025-10-11 22:17:17] 2025-10-12 02:16:31,621 | INFO     | . stage-out = 0 s
[2025-10-11 22:17:17] 2025-10-12 02:16:31,621 | INFO     | . log creation = 0 s
[2025-10-11 22:17:17] 2025-10-12 02:16:31,621 | INFO     | ..............................
[2025-10-11 22:17:17] 2025-10-12 02:16:31,703 | INFO     | 
[2025-10-11 22:17:17] 2025-10-12 02:16:31,703 | INFO     | job summary report
[2025-10-11 22:17:17] 2025-10-12 02:16:31,704 | INFO     | --------------------------------------------------
[2025-10-11 22:17:17] 2025-10-12 02:16:31,704 | INFO     | PanDA job id: 6838851757
[2025-10-11 22:17:17] 2025-10-12 02:16:31,704 | INFO     | task id: 46676269
[2025-10-11 22:17:17] 2025-10-12 02:16:31,704 | INFO     | errors: (none)
[2025-10-11 22:17:17] 2025-10-12 02:16:31,704 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 22:17:17] 2025-10-12 02:16:31,705 | INFO     | pilot state: finished 
[2025-10-11 22:17:17] 2025-10-12 02:16:31,705 | INFO     | transexitcode: 0
[2025-10-11 22:17:17] 2025-10-12 02:16:31,705 | INFO     | exeerrorcode: 0
[2025-10-11 22:17:17] 2025-10-12 02:16:31,705 | INFO     | exeerrordiag: 
[2025-10-11 22:17:17] 2025-10-12 02:16:31,705 | INFO     | exitcode: 0
[2025-10-11 22:17:17] 2025-10-12 02:16:31,705 | INFO     | exitmsg: OK
[2025-10-11 22:17:17] 2025-10-12 02:16:31,706 | INFO     | cpuconsumptiontime: 45078 s
[2025-10-11 22:17:17] 2025-10-12 02:16:31,706 | INFO     | nevents: 400
[2025-10-11 22:17:17] 2025-10-12 02:16:31,706 | INFO     | neventsw: 0
[2025-10-11 22:17:17] 2025-10-12 02:16:31,706 | INFO     | pid: 2887
[2025-10-11 22:17:17] 2025-10-12 02:16:31,706 | INFO     | pgrp: 2887
[2025-10-11 22:17:17] 2025-10-12 02:16:31,706 | INFO     | corecount: 12
[2025-10-11 22:17:17] 2025-10-12 02:16:31,706 | INFO     | event service: False
[2025-10-11 22:17:17] 2025-10-12 02:16:31,707 | INFO     | sizes: {0: 2348743, 1: 2348885, 6: 2349147, 11: 2349175, 4143: 2375071, 4144: 2384069, 4145: 2384253, 4151: 2384447}
[2025-10-11 22:17:17] 2025-10-12 02:16:31,707 | INFO     | --------------------------------------------------
[2025-10-11 22:17:17] 2025-10-12 02:16:31,707 | INFO     | 
[2025-10-11 22:17:17] 2025-10-12 02:16:31,707 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 22:17:17] 2025-10-12 02:16:31,730 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 22:17:17] 2025-10-12 02:16:31,730 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 22:17:17] 2025-10-12 02:16:31,730 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 22:17:17] 2025-10-12 02:16:31,730 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 22:17:17] 2025-10-12 02:16:31,731 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 22:17:17] 2025-10-12 02:16:31,731 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 22:17:17] 2025-10-12 02:16:31,731 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 22:17:17] 2025-10-12 02:16:31,731 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 22:17:17] 2025-10-12 02:16:31,731 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 22:17:17] 2025-10-12 02:16:31,732 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 22:17:17] 2025-10-12 02:16:31,732 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 22:17:17] 2025-10-12 02:16:31,732 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 22:17:17] 2025-10-12 02:16:31,732 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 22:17:17] 2025-10-12 02:16:31,732 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 22:17:17] 2025-10-12 02:16:31,732 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 22:17:17] 2025-10-12 02:16:31,733 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 22:17:17] 2025-10-12 02:16:31,733 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 22:17:17] 2025-10-12 02:16:31,733 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 22:17:17] 2025-10-12 02:16:31,733 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 22:17:17] 2025-10-12 02:16:31,733 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 22:17:17] 2025-10-12 02:16:31,733 | INFO     | job 6838851757 has completed (purged errors)
[2025-10-11 22:17:17] 2025-10-12 02:16:31,734 | INFO     | overall cleanup function is called
[2025-10-11 22:17:17] 2025-10-12 02:16:32,742 | INFO     | --- collectZombieJob: --- 10, [2887]
[2025-10-11 22:17:17] 2025-10-12 02:16:32,742 | INFO     | zombie collector waiting for pid 2887
[2025-10-11 22:17:17] 2025-10-12 02:16:32,742 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 22:17:17] 2025-10-12 02:16:32,742 | INFO     | collected zombie processes
[2025-10-11 22:17:17] 2025-10-12 02:16:32,742 | INFO     | will attempt to kill all subprocesses of pid=2887
[2025-10-11 22:17:17] 2025-10-12 02:16:32,837 | INFO     | process IDs to be killed: [2887] (in reverse order)
[2025-10-11 22:17:17] 2025-10-12 02:16:32,889 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 22:17:17] 2025-10-12 02:16:32,889 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 22:17:17] 2025-10-12 02:16:32,893 | INFO     | did not find any defunct processes belonging to 2887
[2025-10-11 22:17:17] 2025-10-12 02:16:32,896 | INFO     | did not find any defunct processes belonging to 2887
[2025-10-11 22:17:17] 2025-10-12 02:16:32,897 | INFO     | ready for new job
[2025-10-11 22:17:17] 2025-10-12 02:16:32,897 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 22:17:17] 2025-10-12 02:16:32,898 | INFO     | ***************************************
[2025-10-11 22:17:17] 2025-10-12 02:16:32,898 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 22:17:17] 2025-10-12 02:16:32,898 | INFO     | ***************************************
[2025-10-11 22:17:17] 2025-10-12 02:16:32,898 | INFO     | 
[2025-10-11 22:17:17] 2025-10-12 02:16:32,899 | INFO     | architecture information:
[2025-10-11 22:17:17] 2025-10-12 02:16:32,899 | INFO     | executing command: cat /etc/os-release
[2025-10-11 22:17:17] 2025-10-12 02:16:32,913 | INFO     | cat /etc/os-release:
[2025-10-11 22:17:17] NAME="CentOS Linux"
[2025-10-11 22:17:17] VERSION="7 (Core)"
[2025-10-11 22:17:17] ID="centos"
[2025-10-11 22:17:17] ID_LIKE="rhel fedora"
[2025-10-11 22:17:17] VERSION_ID="7"
[2025-10-11 22:17:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 22:17:17] ANSI_COLOR="0;31"
[2025-10-11 22:17:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 22:17:17] HOME_URL="https://www.centos.org/"
[2025-10-11 22:17:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 22:17:17] 
[2025-10-11 22:17:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 22:17:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 22:17:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 22:17:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 22:17:17] 
[2025-10-11 22:17:17] 2025-10-12 02:16:32,913 | INFO     | ***************************************
[2025-10-11 22:17:17] 2025-10-12 02:16:33,416 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 22:17:17] 2025-10-12 02:16:33,433 | INFO     | sufficient remaining disk space (29368516608 B)
[2025-10-11 22:17:17] 2025-10-12 02:16:33,434 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 22:17:17] 2025-10-12 02:16:33,434 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 22:17:17] 2025-10-12 02:16:33,434 | INFO     | update_server=False
[2025-10-11 22:17:17] 2025-10-12 02:16:33,434 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 22:17:17] 2025-10-12 02:16:33,434 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 22:17:17] 2025-10-12 02:16:33,435 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:17:17] 2025-10-12 02:16:33,736 | INFO     | all job control threads have been joined
[2025-10-11 22:17:17] 2025-10-12 02:16:33,868 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:17:17] 2025-10-12 02:16:33,868 | INFO     | aborting loop
[2025-10-11 22:17:17] 2025-10-12 02:16:34,036 | INFO     | all data control threads have been joined
[2025-10-11 22:17:17] 2025-10-12 02:16:34,436 | INFO     | [job] retrieve thread has finished
[2025-10-11 22:17:17] 2025-10-12 02:16:34,440 | INFO     | [job] queue monitor thread has finished
[2025-10-11 22:17:17] 2025-10-12 02:16:34,446 | INFO     | [payload] validate_post thread has finished
[2025-10-11 22:17:17] 2025-10-12 02:16:34,652 | INFO     | all payload control threads have been joined
[2025-10-11 22:17:17] 2025-10-12 02:16:34,742 | INFO     | [job] control thread has finished
[2025-10-11 22:17:17] 2025-10-12 02:16:34,744 | INFO     | [data] copytool_in thread has finished
[2025-10-11 22:17:17] 2025-10-12 02:16:34,873 | INFO     | [job] job monitor thread has finished
[2025-10-11 22:17:17] 2025-10-12 02:16:34,984 | INFO     | [job] validate thread has finished
[2025-10-11 22:17:17] 2025-10-12 02:16:35,042 | INFO     | [data] control thread has finished
[2025-10-11 22:17:17] 2025-10-12 02:16:35,090 | INFO     | [payload] failed_post thread has finished
[2025-10-11 22:17:17] 2025-10-12 02:16:35,273 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 22:17:17] 2025-10-12 02:16:35,440 | INFO     | [data] copytool_out thread has finished
[2025-10-11 22:17:17] 2025-10-12 02:16:35,657 | INFO     | [payload] control thread has finished
[2025-10-11 22:17:17] 2025-10-12 02:16:35,694 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 22:17:17] 2025-10-12 02:16:35,873 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 22:17:17] 2025-10-12 02:16:35,922 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 22:17:17] 2025-10-12 02:16:39,928 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 22:17:17] 2025-10-12 02:16:44,358 | INFO     | job.realtimelogging is not enabled
[2025-10-11 22:17:17] 2025-10-12 02:16:45,359 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 22:17:17] 2025-10-12 02:17:04,046 | INFO     | PID=28788 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 22:17:17] 2025-10-12 02:17:04,047 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 22:17:17] 2025-10-12 02:17:04,047 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 22:17:17] 2025-10-12 02:17:04,047 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 22:17:17] 2025-10-12 02:17:10,954 | INFO     | [monitor] cgroup control has ended
[2025-10-11 22:17:17] 2025-10-12 02:17:12,159 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140154125948736)>', '<ExcThread(monitor, started 140153523771136)>']
[2025-10-11 22:17:17] 2025-10-12 02:17:13,093 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 22:17:17] 2025-10-12 02:17:13,093 | INFO     | [monitor] control thread has ended
[2025-10-11 22:17:17] 2025-10-12 02:17:17,185 | INFO     | all workflow threads have been joined
[2025-10-11 22:17:17] 2025-10-12 02:17:17,185 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 22:17:17] 2025-10-12 02:17:17,186 | INFO     | traces error code: 0
[2025-10-11 22:17:17] 2025-10-12 02:17:17,186 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 22:17:17] 2025-10-12 02:17:17,287 [wrapper] ==== pilot stdout END ====
[2025-10-11 22:17:17] 2025-10-12 02:17:17,290 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 22:17:17] 2025-10-12 02:17:17,294 [wrapper] pilotpid: 28788
[2025-10-11 22:17:17] 2025-10-12 02:17:17,298 [wrapper] Pilot exit status: 0
[2025-10-11 22:17:17] 2025-10-12 02:17:17,315 [wrapper] pandaids: 6838851757
[2025-10-11 22:17:17] 2025-10-12 02:17:17,359 [wrapper] cleanup supervisor_pilot  9279 28789
[2025-10-11 22:17:17] 2025-10-12 02:17:17,363 [wrapper] Test setup, not cleaning
[2025-10-11 22:17:17] 2025-10-12 02:17:17,367 [wrapper] apfmon messages muted
[2025-10-11 22:17:17] 2025-10-12 02:17:17,371 [wrapper] ==== wrapper stdout END ====
[2025-10-11 22:17:17] 2025-10-12 02:17:17,375 [wrapper] ==== wrapper stderr END ====
[2025-10-11 22:17:17]  *** Error codes and diagnostics ***
[2025-10-11 22:17:17]     "exeErrorCode": 0,
[2025-10-11 22:17:17]     "exeErrorDiag": "",
[2025-10-11 22:17:17]     "pilotErrorCode": 0,
[2025-10-11 22:17:17]     "pilotErrorDiag": "",
[2025-10-11 22:17:17]  *** Listing of results directory ***
[2025-10-11 22:17:17] total 410592
[2025-10-11 22:17:17] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 15:43 pilot3.tar.gz
[2025-10-11 22:17:17] -rwx------ 1 boincer umatlas     36292 Oct 11 15:48 runpilot2-wrapper.sh
[2025-10-11 22:17:17] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 15:48 queuedata.json
[2025-10-11 22:17:17] -rw-r--r-- 1 boincer umatlas       100 Oct 11 21:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 22:17:17] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 21:06 run_atlas
[2025-10-11 22:17:17] -rw-r--r-- 1 boincer umatlas       105 Oct 11 21:06 job.xml
[2025-10-11 22:17:17] -rw-r--r-- 2 boincer umatlas 219825270 Oct 11 21:06 EVNT.46676267._002569.pool.root.1
[2025-10-11 22:17:17] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 21:06 start_atlas.sh
[2025-10-11 22:17:17] drwxrwx--x 2 boincer umatlas      4096 Oct 11 21:06 shared
[2025-10-11 22:17:17] -rw-r--r-- 2 boincer umatlas    569674 Oct 11 21:06 input.tar.gz
[2025-10-11 22:17:17] -rw-r--r-- 1 boincer umatlas         0 Oct 11 21:06 boinc_lockfile
[2025-10-11 22:17:17] -rw-r--r-- 1 boincer umatlas      2550 Oct 11 21:06 pandaJob.out
[2025-10-11 22:17:17] -rw------- 1 boincer umatlas    975496 Oct 11 21:07 agis_schedconf.cvmfs.json
[2025-10-11 22:17:17] -rw------- 1 boincer umatlas   1560580 Oct 11 21:07 agis_ddmendpoints.agis.ALL.json
[2025-10-11 22:17:17] drwx------ 5 boincer umatlas      4096 Oct 11 21:07 pilot3
[2025-10-11 22:17:17] -rw-r--r-- 1 boincer umatlas      5952 Oct 11 22:12 init_data.xml
[2025-10-11 22:17:17] -rw------- 1 boincer umatlas 194707787 Oct 11 22:15 HITS.46676269._063930.pool.root.1
[2025-10-11 22:17:17] -rw-r--r-- 1 boincer umatlas       529 Oct 11 22:16 boinc_task_state.xml
[2025-10-11 22:17:17] -rw------- 1 boincer umatlas      1049 Oct 11 22:16 memory_monitor_summary.json
[2025-10-11 22:17:17] -rw------- 1 boincer umatlas    394909 Oct 11 22:16 log.46676269._063930.job.log.tgz.1
[2025-10-11 22:17:17] -rw------- 1 boincer umatlas      7852 Oct 11 22:16 heartbeat.json
[2025-10-11 22:17:17] -rw------- 1 boincer umatlas        95 Oct 11 22:17 pilot_heartbeat.json
[2025-10-11 22:17:17] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 22:17 boinc_mmap_file
[2025-10-11 22:17:17] -rw-r--r-- 1 boincer umatlas        27 Oct 11 22:17 wrapper_checkpoint.txt
[2025-10-11 22:17:17] -rw------- 1 boincer umatlas      4818 Oct 11 22:17 pilotlog.txt
[2025-10-11 22:17:17] -rw------- 1 boincer umatlas    607220 Oct 11 22:17 log.46676269._063930.job.log.1
[2025-10-11 22:17:17] -rw------- 1 boincer umatlas       357 Oct 11 22:17 output.list
[2025-10-11 22:17:17] -rw-r--r-- 1 boincer umatlas       620 Oct 11 22:17 runtime_log
[2025-10-11 22:17:17] -rw------- 1 boincer umatlas   1024000 Oct 11 22:17 result.tar.gz
[2025-10-11 22:17:17] -rw-r--r-- 1 boincer umatlas      8705 Oct 11 22:17 runtime_log.err
[2025-10-11 22:17:17] -rw------- 1 boincer umatlas       659 Oct 11 22:17 knLLDmNluR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTShNDmNyoO9n.diag
[2025-10-11 22:17:17] -rw-r--r-- 1 boincer umatlas     21842 Oct 11 22:17 stderr.txt
[2025-10-11 22:17:17] HITS file was successfully produced:
[2025-10-11 22:17:17] -rw------- 1 boincer umatlas 194707787 Oct 11 22:15 shared/HITS.pool.root.1
[2025-10-11 22:17:17]  *** Contents of shared directory: ***
[2025-10-11 22:17:17] total 406404
[2025-10-11 22:17:17] -rw-r--r-- 2 boincer umatlas 219825270 Oct 11 21:06 ATLAS.root_0
[2025-10-11 22:17:17] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 21:06 start_atlas.sh
[2025-10-11 22:17:17] -rw-r--r-- 2 boincer umatlas    569674 Oct 11 21:06 input.tar.gz
[2025-10-11 22:17:17] -rw------- 1 boincer umatlas 194707787 Oct 11 22:15 HITS.pool.root.1
[2025-10-11 22:17:17] -rw------- 1 boincer umatlas   1024000 Oct 11 22:17 result.tar.gz
22:17:19 (25109): run_atlas exited; CPU time 45052.973432
22:17:19 (25109): called boinc_finish(0)

</stderr_txt>
]]>

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