Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:07:09 (26605): wrapper (7.7.26015): starting
21:07:09 (26605): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 21:07:09] Arguments: --nthreads 8
[2025-10-11 21:07:09] Threads: 8
[2025-10-11 21:07:09] Checking for CVMFS
[2025-10-11 21:07:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 21:07:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 21:07:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 21:07:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 21:07:09] 2.11.2.0 3213 627137 248664 151601 4 188 20050697 20275201 917 130560 1 356915612 99.992 26036618 20160 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 21:07:09] CVMFS is ok
[2025-10-11 21:07:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 21:07:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 21:07:09] Further information can be found at the LHC@home message board.
[2025-10-11 21:07:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 21:07:09] Checking for apptainer binary...
[2025-10-11 21:07:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 21:07:09] Running /usr/bin/apptainer --version
[2025-10-11 21:07:09] apptainer version 1.3.2-1.el7
[2025-10-11 21:07:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 21:07:10] c-205-38.aglt2.org
[2025-10-11 21:07:10] apptainer works
[2025-10-11 21:07:10] Set ATHENA_PROC_NUMBER=8
[2025-10-11 21:07:10] Set ATHENA_CORE_NUMBER=8
[2025-10-11 21:07:10] Starting ATLAS job with PandaID=6838851695
[2025-10-11 21:07:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 22:04:29]  *** The last 200 lines of the pilot log: ***
[2025-10-11 22:04:29]  storage_token=
[2025-10-11 22:04:29]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6838851695/log.46676269._063868.job.log.tgz.1
[2025-10-11 22:04:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c9/b7/log.46676269._063868.job.log.tgz.1
[2025-10-11 22:04:29]  workdir=None
[2025-10-11 22:04:29] ]
[2025-10-11 22:04:29] 2025-10-12 02:03:29,331 | INFO     | transferring file log.46676269._063868.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6838851695/log.46676269._063868.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 22:04:29] 2025-10-12 02:03:29,331 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6838851695/log.46676269._063868.job.log.tgz.1 /tmp/boinchome/slots/1/log.46676269._063868.job
[2025-10-11 22:04:29] 2025-10-12 02:03:29,350 | INFO     | adding to output.list: log.46676269._063868.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c9/b7/log.46676269._063868.job.log.tg
[2025-10-11 22:04:29] 2025-10-12 02:03:29,351 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 22:04:29] 2025-10-12 02:03:29,351 | INFO     | summary of transferred files:
[2025-10-11 22:04:29] 2025-10-12 02:03:29,351 | INFO     |  -- lfn=log.46676269._063868.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 22:04:29] 2025-10-12 02:03:29,351 | INFO     | stage-out finished correctly
[2025-10-11 22:04:29] 2025-10-12 02:03:30,191 | INFO     | monitor loop #259: job 0:6838851695 is in state 'finished'
[2025-10-11 22:04:29] 2025-10-12 02:03:30,192 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 22:04:29] 2025-10-12 02:03:30,245 | INFO     | time since job start (3372s) is within the limit (172800.0s)
[2025-10-11 22:04:29] 2025-10-12 02:03:31,347 | INFO     | PID=30272 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 22:04:29] 2025-10-12 02:03:31,347 | INFO     | .. there are 2 such processes running
[2025-10-11 22:04:29] 2025-10-12 02:03:31,627 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 22:04:29] 2025-10-12 02:03:31,926 | INFO     | job 6838851695 has state=finished
[2025-10-11 22:04:29] 2025-10-12 02:03:31,927 | INFO     | preparing for final server update for job 6838851695 in state='finished'
[2025-10-11 22:04:29] 2025-10-12 02:03:31,927 | INFO     | this job has now completed (state=finished)
[2025-10-11 22:04:29] 2025-10-12 02:03:31,927 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 22:04:29] 2025-10-12 02:03:31,927 | INFO     | log transfer has been attempted: DONE
[2025-10-11 22:04:29] 2025-10-12 02:03:31,928 | INFO     | job 6838851695 has finished - writing final server update
[2025-10-11 22:04:29] 2025-10-12 02:03:31,928 | INFO     | total number of processed events: 400 (read)
[2025-10-11 22:04:29] 2025-10-12 02:03:31,930 | INFO     | executing command: lscpu
[2025-10-11 22:04:29] 2025-10-12 02:03:31,964 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 22:04:29] 2025-10-12 02:03:32,347 | INFO     | time since job start (3374s) is within the limit (172800.0s)
[2025-10-11 22:04:29] 2025-10-12 02:03:32,694 | INFO     | monitor loop #260: job 0:6838851695 is in state 'finished'
[2025-10-11 22:04:29] 2025-10-12 02:03:32,694 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 22:04:29] 2025-10-12 02:03:34,352 | INFO     | time since job start (3376s) is within the limit (172800.0s)
[2025-10-11 22:04:29] 2025-10-12 02:03:35,197 | INFO     | monitor loop #261: job 0:6838851695 is in state 'finished'
[2025-10-11 22:04:29] 2025-10-12 02:03:35,197 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 22:04:29] 2025-10-12 02:03:35,597 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 22:04:29] 2025-10-12 02:03:35,599 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2674.12075
[2025-10-11 22:04:29] 2025-10-12 02:03:35,601 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6838851695/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 22:04:29] 2025-10-12 02:03:35,601 | INFO     | extracted standard info from prmon json
[2025-10-11 22:04:29] 2025-10-12 02:03:35,601 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 22:04:29] 2025-10-12 02:03:35,601 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 22:04:29] 2025-10-12 02:03:35,602 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 22:04:29] 2025-10-12 02:03:35,602 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 22:04:29] 2025-10-12 02:03:35,603 | INFO     | fitting pss+swap vs Time
[2025-10-11 22:04:29] 2025-10-12 02:03:35,603 | INFO     | sum of square deviations: 34277852.0
[2025-10-11 22:04:29] 2025-10-12 02:03:35,603 | INFO     | sum of deviations: -161979125.5000001
[2025-10-11 22:04:29] 2025-10-12 02:03:35,603 | INFO     | mean x: 1760232996.5
[2025-10-11 22:04:29] 2025-10-12 02:03:35,603 | INFO     | mean y: 2518604.7291666665
[2025-10-11 22:04:29] 2025-10-12 02:03:35,603 | INFO     | -- intersect: 8320455255.173738
[2025-10-11 22:04:29] 2025-10-12 02:03:35,603 | INFO     | intersect: 8320455255.173738
[2025-10-11 22:04:29] 2025-10-12 02:03:35,603 | INFO     | chi2: 0.0059842794084395455
[2025-10-11 22:04:29] 2025-10-12 02:03:35,603 | INFO     | -- intersect: 8320455255.173738
[2025-10-11 22:04:29] 2025-10-12 02:03:35,603 | INFO     | current memory leak: -4.73 B/s (using 48 data points, chi2=0.01)
[2025-10-11 22:04:29] 2025-10-12 02:03:35,604 | INFO     | could have reported an average CPU frequency of 2811 MHz (5 samples)
[2025-10-11 22:04:29] 2025-10-12 02:03:35,604 | INFO     | ..............................
[2025-10-11 22:04:29] 2025-10-12 02:03:35,604 | INFO     | . Timing measurements:
[2025-10-11 22:04:29] 2025-10-12 02:03:35,604 | INFO     | . get job = 0 s
[2025-10-11 22:04:29] 2025-10-12 02:03:35,604 | INFO     | . initial setup = 2 s
[2025-10-11 22:04:29] 2025-10-12 02:03:35,604 | INFO     | . payload setup = 3 s
[2025-10-11 22:04:29] 2025-10-12 02:03:35,604 | INFO     | . stage-in = 0 s
[2025-10-11 22:04:29] 2025-10-12 02:03:35,604 | INFO     | . payload execution = 3348 s
[2025-10-11 22:04:29] 2025-10-12 02:03:35,604 | INFO     | . stage-out = 0 s
[2025-10-11 22:04:29] 2025-10-12 02:03:35,604 | INFO     | . log creation = 0 s
[2025-10-11 22:04:29] 2025-10-12 02:03:35,604 | INFO     | ..............................
[2025-10-11 22:04:29] 2025-10-12 02:03:35,652 | INFO     | 
[2025-10-11 22:04:29] 2025-10-12 02:03:35,652 | INFO     | job summary report
[2025-10-11 22:04:29] 2025-10-12 02:03:35,652 | INFO     | --------------------------------------------------
[2025-10-11 22:04:29] 2025-10-12 02:03:35,653 | INFO     | PanDA job id: 6838851695
[2025-10-11 22:04:29] 2025-10-12 02:03:35,653 | INFO     | task id: 46676269
[2025-10-11 22:04:29] 2025-10-12 02:03:35,653 | INFO     | errors: (none)
[2025-10-11 22:04:29] 2025-10-12 02:03:35,653 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 22:04:29] 2025-10-12 02:03:35,653 | INFO     | pilot state: finished 
[2025-10-11 22:04:29] 2025-10-12 02:03:35,653 | INFO     | transexitcode: 0
[2025-10-11 22:04:29] 2025-10-12 02:03:35,653 | INFO     | exeerrorcode: 0
[2025-10-11 22:04:29] 2025-10-12 02:03:35,653 | INFO     | exeerrordiag: 
[2025-10-11 22:04:29] 2025-10-12 02:03:35,653 | INFO     | exitcode: 0
[2025-10-11 22:04:29] 2025-10-12 02:03:35,654 | INFO     | exitmsg: OK
[2025-10-11 22:04:29] 2025-10-12 02:03:35,654 | INFO     | cpuconsumptiontime: 24660 s
[2025-10-11 22:04:29] 2025-10-12 02:03:35,654 | INFO     | nevents: 400
[2025-10-11 22:04:29] 2025-10-12 02:03:35,654 | INFO     | neventsw: 0
[2025-10-11 22:04:29] 2025-10-12 02:03:35,654 | INFO     | pid: 4359
[2025-10-11 22:04:29] 2025-10-12 02:03:35,654 | INFO     | pgrp: 4359
[2025-10-11 22:04:29] 2025-10-12 02:03:35,654 | INFO     | corecount: 8
[2025-10-11 22:04:29] 2025-10-12 02:03:35,654 | INFO     | event service: False
[2025-10-11 22:04:29] 2025-10-12 02:03:35,654 | INFO     | sizes: {0: 2348857, 1: 2348857, 3: 2349147, 11: 2349175, 3355: 2374900, 3357: 2383898, 3359: 2384082, 3363: 2384308}
[2025-10-11 22:04:29] 2025-10-12 02:03:35,655 | INFO     | --------------------------------------------------
[2025-10-11 22:04:29] 2025-10-12 02:03:35,655 | INFO     | 
[2025-10-11 22:04:29] 2025-10-12 02:03:35,655 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-11 22:04:29] 2025-10-12 02:03:35,677 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 22:04:29] 2025-10-12 02:03:35,677 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 22:04:29] 2025-10-12 02:03:35,677 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 22:04:29] 2025-10-12 02:03:35,678 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 22:04:29] 2025-10-12 02:03:35,678 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 22:04:29] 2025-10-12 02:03:35,678 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 22:04:29] 2025-10-12 02:03:35,678 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 22:04:29] 2025-10-12 02:03:35,678 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 22:04:29] 2025-10-12 02:03:35,678 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 22:04:29] 2025-10-12 02:03:35,678 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 22:04:29] 2025-10-12 02:03:35,678 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 22:04:29] 2025-10-12 02:03:35,678 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 22:04:29] 2025-10-12 02:03:35,678 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 22:04:29] 2025-10-12 02:03:35,679 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 22:04:29] 2025-10-12 02:03:35,679 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 22:04:29] 2025-10-12 02:03:35,679 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 22:04:29] 2025-10-12 02:03:35,679 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 22:04:29] 2025-10-12 02:03:35,679 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 22:04:29] 2025-10-12 02:03:35,679 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 22:04:29] 2025-10-12 02:03:35,679 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 22:04:29] 2025-10-12 02:03:35,679 | INFO     | job 6838851695 has completed (purged errors)
[2025-10-11 22:04:29] 2025-10-12 02:03:35,679 | INFO     | overall cleanup function is called
[2025-10-11 22:04:29] 2025-10-12 02:03:36,687 | INFO     | --- collectZombieJob: --- 10, [4359]
[2025-10-11 22:04:29] 2025-10-12 02:03:36,687 | INFO     | zombie collector waiting for pid 4359
[2025-10-11 22:04:29] 2025-10-12 02:03:36,688 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 22:04:29] 2025-10-12 02:03:36,688 | INFO     | collected zombie processes
[2025-10-11 22:04:29] 2025-10-12 02:03:36,688 | INFO     | will attempt to kill all subprocesses of pid=4359
[2025-10-11 22:04:29] 2025-10-12 02:03:36,775 | INFO     | process IDs to be killed: [4359] (in reverse order)
[2025-10-11 22:04:29] 2025-10-12 02:03:36,824 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 22:04:29] 2025-10-12 02:03:36,824 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 22:04:29] 2025-10-12 02:03:36,826 | INFO     | did not find any defunct processes belonging to 4359
[2025-10-11 22:04:29] 2025-10-12 02:03:36,827 | INFO     | did not find any defunct processes belonging to 4359
[2025-10-11 22:04:29] 2025-10-12 02:03:36,827 | INFO     | ready for new job
[2025-10-11 22:04:29] 2025-10-12 02:03:36,827 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 22:04:29] 2025-10-12 02:03:36,828 | INFO     | ***************************************
[2025-10-11 22:04:29] 2025-10-12 02:03:36,828 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 22:04:29] 2025-10-12 02:03:36,828 | INFO     | ***************************************
[2025-10-11 22:04:29] 2025-10-12 02:03:36,828 | INFO     | 
[2025-10-11 22:04:29] 2025-10-12 02:03:36,829 | INFO     | architecture information:
[2025-10-11 22:04:29] 2025-10-12 02:03:36,829 | INFO     | executing command: cat /etc/os-release
[2025-10-11 22:04:29] 2025-10-12 02:03:36,844 | INFO     | cat /etc/os-release:
[2025-10-11 22:04:29] NAME="CentOS Linux"
[2025-10-11 22:04:29] VERSION="7 (Core)"
[2025-10-11 22:04:29] ID="centos"
[2025-10-11 22:04:29] ID_LIKE="rhel fedora"
[2025-10-11 22:04:29] VERSION_ID="7"
[2025-10-11 22:04:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 22:04:29] ANSI_COLOR="0;31"
[2025-10-11 22:04:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 22:04:29] HOME_URL="https://www.centos.org/"
[2025-10-11 22:04:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 22:04:29] 
[2025-10-11 22:04:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 22:04:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 22:04:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 22:04:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 22:04:29] 
[2025-10-11 22:04:29] 2025-10-12 02:03:36,844 | INFO     | ***************************************
[2025-10-11 22:04:29] 2025-10-12 02:03:37,346 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-11 22:04:29] 2025-10-12 02:03:37,364 | INFO     | sufficient remaining disk space (32732348416 B)
[2025-10-11 22:04:29] 2025-10-12 02:03:37,365 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 22:04:29] 2025-10-12 02:03:37,365 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 22:04:29] 2025-10-12 02:03:37,365 | INFO     | update_server=False
[2025-10-11 22:04:29] 2025-10-12 02:03:37,365 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 22:04:29] 2025-10-12 02:03:37,365 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:04:29] 2025-10-12 02:03:37,401 | INFO     | all job control threads have been joined
[2025-10-11 22:04:29] 2025-10-12 02:03:37,410 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 22:04:29] 2025-10-12 02:03:37,678 | INFO     | all data control threads have been joined
[2025-10-11 22:04:29] 2025-10-12 02:03:37,699 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 22:04:29] 2025-10-12 02:03:37,699 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 22:04:29] 2025-10-12 02:03:37,699 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:04:29] 2025-10-12 02:03:37,700 | INFO     | will abort loop
[2025-10-11 22:04:29] 2025-10-12 02:03:37,715 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 22:04:29] 2025-10-12 02:03:38,369 | INFO     | [job] retrieve thread has finished
[2025-10-11 22:04:29] 2025-10-12 02:03:38,370 | INFO     | [job] queue monitor thread has finished
[2025-10-11 22:04:29] 2025-10-12 02:03:38,406 | INFO     | [job] control thread has finished
[2025-10-11 22:04:29] 2025-10-12 02:03:38,675 | INFO     | all payload control threads have been joined
[2025-10-11 22:04:29] 2025-10-12 02:03:38,681 | INFO     | [data] control thread has finished
[2025-10-11 22:04:29] 2025-10-12 02:03:38,702 | INFO     | [job] job monitor thread has finished
[2025-10-11 22:04:29] 2025-10-12 02:03:38,862 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 22:04:29] 2025-10-12 02:03:39,007 | INFO     | [data] copytool_in thread has finished
[2025-10-11 22:04:29] 2025-10-12 02:03:39,050 | INFO     | [job] validate thread has finished
[2025-10-11 22:04:29] 2025-10-12 02:03:39,171 | INFO     | [payload] failed_post thread has finished
[2025-10-11 22:04:29] 2025-10-12 02:03:39,356 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 22:04:29] 2025-10-12 02:03:39,415 | INFO     | [data] copytool_out thread has finished
[2025-10-11 22:04:29] 2025-10-12 02:03:39,417 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 22:04:29] 2025-10-12 02:03:39,681 | INFO     | [payload] control thread has finished
[2025-10-11 22:04:29] 2025-10-12 02:03:39,767 | INFO     | [payload] validate_post thread has finished
[2025-10-11 22:04:29] 2025-10-12 02:03:41,719 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 22:04:29] 2025-10-12 02:03:47,447 | INFO     | job.realtimelogging is not enabled
[2025-10-11 22:04:29] 2025-10-12 02:03:48,452 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 22:04:29] 2025-10-12 02:04:07,539 | INFO     | PID=30272 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 22:04:29] 2025-10-12 02:04:07,539 | INFO     | .. there are 2 such processes running
[2025-10-11 22:04:29] 2025-10-12 02:04:07,540 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 22:04:29] 2025-10-12 02:04:07,540 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 22:04:29] 2025-10-12 02:04:07,540 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 22:04:29] 2025-10-12 02:04:23,495 | INFO     | [monitor] cgroup control has ended
[2025-10-11 22:04:29] 2025-10-12 02:04:24,564 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139845333096256)>', '<ExcThread(monitor, started 139845032716032)>']
[2025-10-11 22:04:29] 2025-10-12 02:04:24,617 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 22:04:29] 2025-10-12 02:04:24,617 | INFO     | [monitor] control thread has ended
[2025-10-11 22:04:29] 2025-10-12 02:04:29,571 | INFO     | all workflow threads have been joined
[2025-10-11 22:04:29] 2025-10-12 02:04:29,571 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 22:04:29] 2025-10-12 02:04:29,572 | INFO     | traces error code: 0
[2025-10-11 22:04:29] 2025-10-12 02:04:29,572 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 22:04:29] 2025-10-12 02:04:29,664 [wrapper] ==== pilot stdout END ====
[2025-10-11 22:04:29] 2025-10-12 02:04:29,667 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 22:04:29] 2025-10-12 02:04:29,670 [wrapper] pilotpid: 30272
[2025-10-11 22:04:29] 2025-10-12 02:04:29,673 [wrapper] Pilot exit status: 0
[2025-10-11 22:04:29] 2025-10-12 02:04:29,684 [wrapper] pandaids: 6838851695
[2025-10-11 22:04:29] 2025-10-12 02:04:29,717 [wrapper] cleanup supervisor_pilot 11500 30273
[2025-10-11 22:04:29] 2025-10-12 02:04:29,720 [wrapper] Test setup, not cleaning
[2025-10-11 22:04:29] 2025-10-12 02:04:29,723 [wrapper] apfmon messages muted
[2025-10-11 22:04:29] 2025-10-12 02:04:29,726 [wrapper] ==== wrapper stdout END ====
[2025-10-11 22:04:29] 2025-10-12 02:04:29,729 [wrapper] ==== wrapper stderr END ====
[2025-10-11 22:04:29]  *** Error codes and diagnostics ***
[2025-10-11 22:04:29]     "exeErrorCode": 0,
[2025-10-11 22:04:29]     "exeErrorDiag": "",
[2025-10-11 22:04:29]     "pilotErrorCode": 0,
[2025-10-11 22:04:29]     "pilotErrorDiag": "",
[2025-10-11 22:04:29]  *** Listing of results directory ***
[2025-10-11 22:04:29] total 409548
[2025-10-11 22:04:29] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 15:43 pilot3.tar.gz
[2025-10-11 22:04:29] -rwx------ 1 boincer umatlas     36292 Oct 11 15:50 runpilot2-wrapper.sh
[2025-10-11 22:04:29] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 15:50 queuedata.json
[2025-10-11 22:04:29] -rw-r--r-- 1 boincer umatlas       100 Oct 11 21:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 22:04:29] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 21:07 run_atlas
[2025-10-11 22:04:29] -rw-r--r-- 1 boincer umatlas       105 Oct 11 21:07 job.xml
[2025-10-11 22:04:29] -rw-r--r-- 2 boincer umatlas 219362381 Oct 11 21:07 EVNT.46676267._002567.pool.root.1
[2025-10-11 22:04:29] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 21:07 start_atlas.sh
[2025-10-11 22:04:29] drwxrwx--x 2 boincer umatlas      4096 Oct 11 21:07 shared
[2025-10-11 22:04:29] -rw-r--r-- 2 boincer umatlas    569675 Oct 11 21:07 input.tar.gz
[2025-10-11 22:04:29] -rw-r--r-- 1 boincer umatlas         0 Oct 11 21:07 boinc_lockfile
[2025-10-11 22:04:29] -rw-r--r-- 1 boincer umatlas      2550 Oct 11 21:07 pandaJob.out
[2025-10-11 22:04:29] -rw------- 1 boincer umatlas    975496 Oct 11 21:07 agis_schedconf.cvmfs.json
[2025-10-11 22:04:29] -rw------- 1 boincer umatlas   1560580 Oct 11 21:07 agis_ddmendpoints.agis.ALL.json
[2025-10-11 22:04:29] drwx------ 5 boincer umatlas      4096 Oct 11 21:07 pilot3
[2025-10-11 22:04:29] -rw------- 1 boincer umatlas 194447036 Oct 11 22:03 HITS.46676269._063868.pool.root.1
[2025-10-11 22:04:29] -rw-r--r-- 1 boincer umatlas       529 Oct 11 22:03 boinc_task_state.xml
[2025-10-11 22:04:29] -rw------- 1 boincer umatlas      1045 Oct 11 22:03 memory_monitor_summary.json
[2025-10-11 22:04:29] -rw------- 1 boincer umatlas    309112 Oct 11 22:03 log.46676269._063868.job.log.tgz.1
[2025-10-11 22:04:29] -rw------- 1 boincer umatlas      7829 Oct 11 22:03 heartbeat.json
[2025-10-11 22:04:29] -rw------- 1 boincer umatlas        95 Oct 11 22:04 pilot_heartbeat.json
[2025-10-11 22:04:29] -rw-r--r-- 1 boincer umatlas      6134 Oct 11 22:04 init_data.xml
[2025-10-11 22:04:29] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 22:04 boinc_mmap_file
[2025-10-11 22:04:29] -rw-r--r-- 1 boincer umatlas        27 Oct 11 22:04 wrapper_checkpoint.txt
[2025-10-11 22:04:29] -rw------- 1 boincer umatlas      5079 Oct 11 22:04 pilotlog.txt
[2025-10-11 22:04:29] -rw------- 1 boincer umatlas    520172 Oct 11 22:04 log.46676269._063868.job.log.1
[2025-10-11 22:04:29] -rw------- 1 boincer umatlas       357 Oct 11 22:04 output.list
[2025-10-11 22:04:29] -rw-r--r-- 1 boincer umatlas       620 Oct 11 22:04 runtime_log
[2025-10-11 22:04:29] -rw------- 1 boincer umatlas    849920 Oct 11 22:04 result.tar.gz
[2025-10-11 22:04:29] -rw-r--r-- 1 boincer umatlas      8703 Oct 11 22:04 runtime_log.err
[2025-10-11 22:04:29] -rw------- 1 boincer umatlas       656 Oct 11 22:04 49SMDmomuR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhShNDmXgUIPm.diag
[2025-10-11 22:04:29] -rw-r--r-- 1 boincer umatlas     22190 Oct 11 22:04 stderr.txt
[2025-10-11 22:04:29] HITS file was successfully produced:
[2025-10-11 22:04:29] -rw------- 1 boincer umatlas 194447036 Oct 11 22:03 shared/HITS.pool.root.1
[2025-10-11 22:04:29]  *** Contents of shared directory: ***
[2025-10-11 22:04:29] total 405532
[2025-10-11 22:04:29] -rw-r--r-- 2 boincer umatlas 219362381 Oct 11 21:07 ATLAS.root_0
[2025-10-11 22:04:29] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 21:07 start_atlas.sh
[2025-10-11 22:04:29] -rw-r--r-- 2 boincer umatlas    569675 Oct 11 21:07 input.tar.gz
[2025-10-11 22:04:29] -rw------- 1 boincer umatlas 194447036 Oct 11 22:03 HITS.pool.root.1
[2025-10-11 22:04:29] -rw------- 1 boincer umatlas    849920 Oct 11 22:04 result.tar.gz
22:04:31 (26605): run_atlas exited; CPU time 24627.211458
22:04:31 (26605): called boinc_finish(0)

</stderr_txt>
]]>

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