Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:01:40 (20267): wrapper (7.7.26015): starting
21:01:40 (20267): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 21:01:40] Arguments: --nthreads 8
[2025-10-11 21:01:40] Threads: 8
[2025-10-11 21:01:40] Checking for CVMFS
[2025-10-11 21:01:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 21:01:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 21:01:40] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 21:01:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 21:01:40] 2.11.2.0 18601 36379 113896 151601 3 59 11399970 18432000 917 130560 0 32597077 99.994 1290658 37498 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 21:01:40] CVMFS is ok
[2025-10-11 21:01:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 21:01:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 21:01:40] Further information can be found at the LHC@home message board.
[2025-10-11 21:01:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 21:01:40] Checking for apptainer binary...
[2025-10-11 21:01:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 21:01:40] Running /usr/bin/apptainer --version
[2025-10-11 21:01:40] apptainer version 1.3.2-1.el7
[2025-10-11 21:01:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 21:01:41] c-206-13.aglt2.org
[2025-10-11 21:01:41] apptainer works
[2025-10-11 21:01:41] Set ATHENA_PROC_NUMBER=8
[2025-10-11 21:01:41] Set ATHENA_CORE_NUMBER=8
[2025-10-11 21:01:41] Starting ATLAS job with PandaID=6838990520
[2025-10-11 21:01:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:00:05 (20267): BOINC client no longer exists - exiting
00:00:05 (20267): timer handler: client dead, exiting
00:00:07 (30874): wrapper (7.7.26015): starting
00:00:07 (30874): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 00:00:07] Arguments: --nthreads 8
[2025-10-12 00:00:07] Threads: 8
[2025-10-12 00:00:07] This job has been restarted, cleaning up previous attempt
[2025-10-12 00:00:07] Checking for CVMFS
[2025-10-12 00:00:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 00:00:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 00:00:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 00:00:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 00:00:07] 2.11.2.0 18601 36558 110904 151606 1 18 11424982 18432001 1 130560 0 32874361 99.994 1297322 37460 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 00:00:07] CVMFS is ok
[2025-10-12 00:00:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 00:00:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 00:00:07] Further information can be found at the LHC@home message board.
[2025-10-12 00:00:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 00:00:07] Checking for apptainer binary...
[2025-10-12 00:00:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 00:00:07] Running /usr/bin/apptainer --version
[2025-10-12 00:00:07] apptainer version 1.3.2-1.el7
[2025-10-12 00:00:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 00:00:08] c-206-13.aglt2.org
[2025-10-12 00:00:08] apptainer works
[2025-10-12 00:00:08] Set ATHENA_PROC_NUMBER=8
[2025-10-12 00:00:08] Set ATHENA_CORE_NUMBER=8
[2025-10-12 00:00:09] Starting ATLAS job with PandaID=6838990520
[2025-10-12 00:00:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 03:15:45]  *** The last 200 lines of the pilot log: ***
[2025-10-12 03:15:45] 2025-10-12 07:14:41,586 | INFO     | fitting pss+swap vs Time
[2025-10-12 03:15:45] 2025-10-12 07:14:41,587 | INFO     | sum of square deviations: 2160561440.0
[2025-10-12 03:15:45] 2025-10-12 07:14:41,588 | INFO     | sum of deviations: 36405911724.99999
[2025-10-12 03:15:45] 2025-10-12 07:14:41,588 | INFO     | mean x: 1760247441.0
[2025-10-12 03:15:45] 2025-10-12 07:14:41,588 | INFO     | mean y: 2456448.4136125655
[2025-10-12 03:15:45] 2025-10-12 07:14:41,588 | INFO     | -- intersect: -29658080745.660873
[2025-10-12 03:15:45] 2025-10-12 07:14:41,588 | INFO     | intersect: -29658080745.660873
[2025-10-12 03:15:45] 2025-10-12 07:14:41,588 | INFO     | chi2: 1.2989924058069102
[2025-10-12 03:15:45] 2025-10-12 07:14:41,589 | INFO     | sum of square deviations: 1995283922.5
[2025-10-12 03:15:45] 2025-10-12 07:14:41,589 | INFO     | sum of deviations: 35004623446.0
[2025-10-12 03:15:45] 2025-10-12 07:14:41,590 | INFO     | mean x: 1760247288.5
[2025-10-12 03:15:45] 2025-10-12 07:14:41,590 | INFO     | mean y: 2455154.3978494625
[2025-10-12 03:15:45] 2025-10-12 07:14:41,590 | INFO     | -- intersect: -30878760702.131477
[2025-10-12 03:15:45] 2025-10-12 07:14:41,590 | INFO     | intersect: -30878760702.131477
[2025-10-12 03:15:45] 2025-10-12 07:14:41,590 | INFO     | chi2: 1.2994264508314604
[2025-10-12 03:15:45] 2025-10-12 07:14:41,590 | INFO     | current chi2=1.2994264508314604 (change=-0.03341397706482456 %)
[2025-10-12 03:15:45] 2025-10-12 07:14:41,590 | INFO     | right removable region: 185
[2025-10-12 03:15:45] 2025-10-12 07:14:41,591 | INFO     | sum of square deviations: 1995283922.5
[2025-10-12 03:15:45] 2025-10-12 07:14:41,592 | INFO     | sum of deviations: 9332713605.0
[2025-10-12 03:15:45] 2025-10-12 07:14:41,592 | INFO     | mean x: 1760247593.5
[2025-10-12 03:15:45] 2025-10-12 07:14:41,592 | INFO     | mean y: 2481145.430107527
[2025-10-12 03:15:45] 2025-10-12 07:14:41,592 | INFO     | -- intersect: -8230876763.574926
[2025-10-12 03:15:45] 2025-10-12 07:14:41,592 | INFO     | intersect: -8230876763.574926
[2025-10-12 03:15:45] 2025-10-12 07:14:41,592 | INFO     | chi2: 0.026046375877655428
[2025-10-12 03:15:45] 2025-10-12 07:14:41,592 | INFO     | current chi2=0.026046375877655428 (change=97.99487851035774 %)
[2025-10-12 03:15:45] 2025-10-12 07:14:41,593 | INFO     | sum of square deviations: 1838657730.0
[2025-10-12 03:15:45] 2025-10-12 07:14:41,593 | INFO     | sum of deviations: 5244503731.000002
[2025-10-12 03:15:45] 2025-10-12 07:14:41,594 | INFO     | mean x: 1760247746.0
[2025-10-12 03:15:45] 2025-10-12 07:14:41,594 | INFO     | mean y: 2485080.3425414367
[2025-10-12 03:15:45] 2025-10-12 07:14:41,594 | INFO     | -- intersect: -5018365576.501211
[2025-10-12 03:15:45] 2025-10-12 07:14:41,594 | INFO     | intersect: -5018365576.501211
[2025-10-12 03:15:45] 2025-10-12 07:14:41,594 | INFO     | chi2: 0.0005042572653790584
[2025-10-12 03:15:45] 2025-10-12 07:14:41,594 | INFO     | current chi2=0.0005042572653790584 (change=98.06400219459456 %)
[2025-10-12 03:15:45] 2025-10-12 07:14:41,594 | INFO     | sum of square deviations: 1690450300.0
[2025-10-12 03:15:45] 2025-10-12 07:14:41,595 | INFO     | sum of deviations: 4545208240.5
[2025-10-12 03:15:45] 2025-10-12 07:14:41,595 | INFO     | mean x: 1760247898.5
[2025-10-12 03:15:45] 2025-10-12 07:14:41,595 | INFO     | mean y: 2485797.3579545454
[2025-10-12 03:15:45] 2025-10-12 07:14:41,596 | INFO     | -- intersect: -4730391148.852773
[2025-10-12 03:15:45] 2025-10-12 07:14:41,596 | INFO     | intersect: -4730391148.852773
[2025-10-12 03:15:45] 2025-10-12 07:14:41,596 | INFO     | chi2: 0.0003831716907578164
[2025-10-12 03:15:45] 2025-10-12 07:14:41,596 | INFO     | current chi2=0.0003831716907578164 (change=24.01265840566917 %)
[2025-10-12 03:15:45] 2025-10-12 07:14:41,596 | INFO     | left removable region: 30
[2025-10-12 03:15:45] 2025-10-12 07:14:41,596 | INFO     | sum of square deviations: 1154663510.0
[2025-10-12 03:15:45] 2025-10-12 07:14:41,597 | INFO     | sum of deviations: 2423672740.0000014
[2025-10-12 03:15:45] 2025-10-12 07:14:41,597 | INFO     | mean x: 1760248173.0
[2025-10-12 03:15:45] 2025-10-12 07:14:41,597 | INFO     | mean y: 2487040.1677419357
[2025-10-12 03:15:45] 2025-10-12 07:14:41,597 | INFO     | -- intersect: -3692325756.449436
[2025-10-12 03:15:45] 2025-10-12 07:14:41,597 | INFO     | intersect: -3692325756.449436
[2025-10-12 03:15:45] 2025-10-12 07:14:41,598 | INFO     | chi2: 7.844855570420813e-05
[2025-10-12 03:15:45] 2025-10-12 07:14:41,598 | INFO     | -- intersect: -3692325756.449436
[2025-10-12 03:15:45] 2025-10-12 07:14:41,598 | INFO     | current memory leak: 2.10 B/s (using 155 data points, chi2=0.00)
[2025-10-12 03:15:45] 2025-10-12 07:14:41,598 | INFO     | could have reported an average CPU frequency of 2300 MHz (10 samples)
[2025-10-12 03:15:45] 2025-10-12 07:14:41,598 | INFO     | ..............................
[2025-10-12 03:15:45] 2025-10-12 07:14:41,599 | INFO     | . Timing measurements:
[2025-10-12 03:15:45] 2025-10-12 07:14:41,599 | INFO     | . get job = 0 s
[2025-10-12 03:15:45] 2025-10-12 07:14:41,599 | INFO     | . initial setup = 1 s
[2025-10-12 03:15:45] 2025-10-12 07:14:41,599 | INFO     | . payload setup = 6 s
[2025-10-12 03:15:45] 2025-10-12 07:14:41,599 | INFO     | . stage-in = 0 s
[2025-10-12 03:15:45] 2025-10-12 07:14:41,599 | INFO     | . payload execution = 11628 s
[2025-10-12 03:15:45] 2025-10-12 07:14:41,599 | INFO     | . stage-out = 1 s
[2025-10-12 03:15:45] 2025-10-12 07:14:41,599 | INFO     | . log creation = 0 s
[2025-10-12 03:15:45] 2025-10-12 07:14:41,599 | INFO     | ..............................
[2025-10-12 03:15:45] 2025-10-12 07:14:41,673 | INFO     | 
[2025-10-12 03:15:45] 2025-10-12 07:14:41,673 | INFO     | job summary report
[2025-10-12 03:15:45] 2025-10-12 07:14:41,673 | INFO     | --------------------------------------------------
[2025-10-12 03:15:45] 2025-10-12 07:14:41,673 | INFO     | PanDA job id: 6838990520
[2025-10-12 03:15:45] 2025-10-12 07:14:41,673 | INFO     | task id: 46676269
[2025-10-12 03:15:45] 2025-10-12 07:14:41,673 | INFO     | errors: (none)
[2025-10-12 03:15:45] 2025-10-12 07:14:41,673 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 03:15:45] 2025-10-12 07:14:41,673 | INFO     | pilot state: finished 
[2025-10-12 03:15:45] 2025-10-12 07:14:41,673 | INFO     | transexitcode: 0
[2025-10-12 03:15:45] 2025-10-12 07:14:41,674 | INFO     | exeerrorcode: 0
[2025-10-12 03:15:45] 2025-10-12 07:14:41,674 | INFO     | exeerrordiag: 
[2025-10-12 03:15:45] 2025-10-12 07:14:41,674 | INFO     | exitcode: 0
[2025-10-12 03:15:45] 2025-10-12 07:14:41,674 | INFO     | exitmsg: OK
[2025-10-12 03:15:45] 2025-10-12 07:14:41,674 | INFO     | cpuconsumptiontime: 88699 s
[2025-10-12 03:15:45] 2025-10-12 07:14:41,674 | INFO     | nevents: 400
[2025-10-12 03:15:45] 2025-10-12 07:14:41,674 | INFO     | neventsw: 0
[2025-10-12 03:15:45] 2025-10-12 07:14:41,674 | INFO     | pid: 29186
[2025-10-12 03:15:45] 2025-10-12 07:14:41,674 | INFO     | pgrp: 29186
[2025-10-12 03:15:45] 2025-10-12 07:14:41,674 | INFO     | corecount: 8
[2025-10-12 03:15:45] 2025-10-12 07:14:41,675 | INFO     | event service: False
[2025-10-12 03:15:45] 2025-10-12 07:14:41,675 | INFO     | sizes: {0: 2348856, 5: 2349118, 11: 2349174, 11638: 2378617, 11639: 2378616, 11642: 2387854, 11646: 2387992}
[2025-10-12 03:15:45] 2025-10-12 07:14:41,675 | INFO     | --------------------------------------------------
[2025-10-12 03:15:45] 2025-10-12 07:14:41,675 | INFO     | 
[2025-10-12 03:15:45] 2025-10-12 07:14:41,675 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 03:15:45] 2025-10-12 07:14:41,691 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 03:15:45] 2025-10-12 07:14:41,691 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 03:15:45] 2025-10-12 07:14:41,691 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 03:15:45] 2025-10-12 07:14:41,691 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 03:15:45] 2025-10-12 07:14:41,691 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 03:15:45] 2025-10-12 07:14:41,692 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 03:15:45] 2025-10-12 07:14:41,692 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 03:15:45] 2025-10-12 07:14:41,692 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 03:15:45] 2025-10-12 07:14:41,692 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 03:15:45] 2025-10-12 07:14:41,692 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 03:15:45] 2025-10-12 07:14:41,692 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 03:15:45] 2025-10-12 07:14:41,692 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 03:15:45] 2025-10-12 07:14:41,692 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 03:15:45] 2025-10-12 07:14:41,692 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 03:15:45] 2025-10-12 07:14:41,692 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 03:15:45] 2025-10-12 07:14:41,693 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 03:15:45] 2025-10-12 07:14:41,693 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 03:15:45] 2025-10-12 07:14:41,693 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 03:15:45] 2025-10-12 07:14:41,693 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 03:15:45] 2025-10-12 07:14:41,693 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 03:15:45] 2025-10-12 07:14:41,693 | INFO     | job 6838990520 has completed (purged errors)
[2025-10-12 03:15:45] 2025-10-12 07:14:41,693 | INFO     | overall cleanup function is called
[2025-10-12 03:15:45] 2025-10-12 07:14:42,700 | INFO     | --- collectZombieJob: --- 10, [29186]
[2025-10-12 03:15:45] 2025-10-12 07:14:42,700 | INFO     | zombie collector waiting for pid 29186
[2025-10-12 03:15:45] 2025-10-12 07:14:42,701 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 03:15:45] 2025-10-12 07:14:42,701 | INFO     | collected zombie processes
[2025-10-12 03:15:45] 2025-10-12 07:14:42,701 | INFO     | will attempt to kill all subprocesses of pid=29186
[2025-10-12 03:15:45] 2025-10-12 07:14:42,804 | INFO     | process IDs to be killed: [29186] (in reverse order)
[2025-10-12 03:15:45] 2025-10-12 07:14:42,846 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 03:15:45] 2025-10-12 07:14:42,846 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 03:15:45] 2025-10-12 07:14:42,849 | INFO     | did not find any defunct processes belonging to 29186
[2025-10-12 03:15:45] 2025-10-12 07:14:42,851 | INFO     | did not find any defunct processes belonging to 29186
[2025-10-12 03:15:45] 2025-10-12 07:14:42,851 | INFO     | ready for new job
[2025-10-12 03:15:45] 2025-10-12 07:14:42,851 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 03:15:45] 2025-10-12 07:14:42,852 | INFO     | ***************************************
[2025-10-12 03:15:45] 2025-10-12 07:14:42,853 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 03:15:45] 2025-10-12 07:14:42,853 | INFO     | ***************************************
[2025-10-12 03:15:45] 2025-10-12 07:14:42,853 | INFO     | 
[2025-10-12 03:15:45] 2025-10-12 07:14:42,854 | INFO     | architecture information:
[2025-10-12 03:15:45] 2025-10-12 07:14:42,854 | INFO     | executing command: cat /etc/os-release
[2025-10-12 03:15:45] 2025-10-12 07:14:42,865 | INFO     | cat /etc/os-release:
[2025-10-12 03:15:45] NAME="CentOS Linux"
[2025-10-12 03:15:45] VERSION="7 (Core)"
[2025-10-12 03:15:45] ID="centos"
[2025-10-12 03:15:45] ID_LIKE="rhel fedora"
[2025-10-12 03:15:45] VERSION_ID="7"
[2025-10-12 03:15:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 03:15:45] ANSI_COLOR="0;31"
[2025-10-12 03:15:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 03:15:45] HOME_URL="https://www.centos.org/"
[2025-10-12 03:15:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 03:15:45] 
[2025-10-12 03:15:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 03:15:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 03:15:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 03:15:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 03:15:45] 
[2025-10-12 03:15:45] 2025-10-12 07:14:42,866 | INFO     | ***************************************
[2025-10-12 03:15:45] 2025-10-12 07:14:43,369 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 03:15:45] 2025-10-12 07:14:43,381 | INFO     | sufficient remaining disk space (27792506880 B)
[2025-10-12 03:15:45] 2025-10-12 07:14:43,382 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 03:15:45] 2025-10-12 07:14:43,382 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 03:15:45] 2025-10-12 07:14:43,382 | INFO     | update_server=False
[2025-10-12 03:15:45] 2025-10-12 07:14:43,382 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 03:15:45] 2025-10-12 07:14:43,382 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:15:45] 2025-10-12 07:14:43,382 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 03:15:45] 2025-10-12 07:14:43,383 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:15:45] 2025-10-12 07:14:43,383 | INFO     | aborting loop
[2025-10-12 03:15:45] 2025-10-12 07:14:43,492 | INFO     | all payload control threads have been joined
[2025-10-12 03:15:45] 2025-10-12 07:14:43,492 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 03:15:45] 2025-10-12 07:14:43,886 | INFO     | all data control threads have been joined
[2025-10-12 03:15:45] 2025-10-12 07:14:44,387 | INFO     | [job] retrieve thread has finished
[2025-10-12 03:15:45] 2025-10-12 07:14:44,388 | INFO     | [job] queue monitor thread has finished
[2025-10-12 03:15:45] 2025-10-12 07:14:44,388 | INFO     | [job] job monitor thread has finished
[2025-10-12 03:15:45] 2025-10-12 07:14:44,498 | INFO     | [payload] control thread has finished
[2025-10-12 03:15:45] 2025-10-12 07:14:44,892 | INFO     | [data] control thread has finished
[2025-10-12 03:15:45] 2025-10-12 07:14:44,985 | INFO     | all job control threads have been joined
[2025-10-12 03:15:45] 2025-10-12 07:14:45,006 | INFO     | [payload] failed_post thread has finished
[2025-10-12 03:15:45] 2025-10-12 07:14:45,029 | INFO     | [payload] validate_post thread has finished
[2025-10-12 03:15:45] 2025-10-12 07:14:45,388 | INFO     | [data] copytool_out thread has finished
[2025-10-12 03:15:45] 2025-10-12 07:14:45,456 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 03:15:45] 2025-10-12 07:14:45,484 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 03:15:45] 2025-10-12 07:14:45,485 | INFO     | [data] copytool_in thread has finished
[2025-10-12 03:15:45] 2025-10-12 07:14:45,488 | INFO     | [job] validate thread has finished
[2025-10-12 03:15:45] 2025-10-12 07:14:45,862 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 03:15:45] 2025-10-12 07:14:45,990 | INFO     | [job] control thread has finished
[2025-10-12 03:15:45] 2025-10-12 07:14:47,496 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 03:15:45] 2025-10-12 07:14:53,674 | INFO     | job.realtimelogging is not enabled
[2025-10-12 03:15:45] 2025-10-12 07:14:54,679 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 03:15:45] 2025-10-12 07:15:12,164 | INFO     | 11662s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-12 03:15:45] 2025-10-12 07:15:13,306 | INFO     | PID=10026 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 03:15:45] 2025-10-12 07:15:13,306 | INFO     | .. there are 3 such processes running
[2025-10-12 03:15:45] 2025-10-12 07:15:13,307 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 03:15:45] 2025-10-12 07:15:13,307 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 03:15:45] 2025-10-12 07:15:13,307 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 03:15:45] 2025-10-12 07:15:20,388 [wrapper] supervise_pilot (15 min periods counter: 14)
[2025-10-12 03:15:45] 2025-10-12 07:15:39,114 | INFO     | [monitor] cgroup control has ended
[2025-10-12 03:15:45] 2025-10-12 07:15:39,826 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140606385416000)>', '<ExcThread(monitor, started 140605803976448)>']
[2025-10-12 03:15:45] 2025-10-12 07:15:40,427 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 03:15:45] 2025-10-12 07:15:40,427 | INFO     | [monitor] control thread has ended
[2025-10-12 03:15:45] 2025-10-12 07:15:44,850 | INFO     | all workflow threads have been joined
[2025-10-12 03:15:45] 2025-10-12 07:15:44,851 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 03:15:45] 2025-10-12 07:15:44,851 | INFO     | traces error code: 0
[2025-10-12 03:15:45] 2025-10-12 07:15:44,851 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 03:15:45] 2025-10-12 07:15:44,935 [wrapper] ==== pilot stdout END ====
[2025-10-12 03:15:45] 2025-10-12 07:15:44,936 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 03:15:45] 2025-10-12 07:15:44,938 [wrapper] pilotpid: 10026
[2025-10-12 03:15:45] 2025-10-12 07:15:44,940 [wrapper] Pilot exit status: 0
[2025-10-12 03:15:45] 2025-10-12 07:15:44,948 [wrapper] pandaids: 6838990520 6838990520
[2025-10-12 03:15:45] 2025-10-12 07:15:44,974 [wrapper] cleanup supervisor_pilot 10661 10028
[2025-10-12 03:15:45] 2025-10-12 07:15:44,976 [wrapper] Test setup, not cleaning
[2025-10-12 03:15:45] 2025-10-12 07:15:44,978 [wrapper] apfmon messages muted
[2025-10-12 03:15:45] 2025-10-12 07:15:44,980 [wrapper] ==== wrapper stdout END ====
[2025-10-12 03:15:45] 2025-10-12 07:15:44,982 [wrapper] ==== wrapper stderr END ====
[2025-10-12 03:15:45]  *** Error codes and diagnostics ***
[2025-10-12 03:15:45]     "exeErrorCode": 0,
[2025-10-12 03:15:45]     "exeErrorDiag": "",
[2025-10-12 03:15:45]     "pilotErrorCode": 0,
[2025-10-12 03:15:45]     "pilotErrorDiag": "",
[2025-10-12 03:15:45]  *** Listing of results directory ***
[2025-10-12 03:15:45] total 637616
[2025-10-12 03:15:45] drwx------ 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-12 03:15:45] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 18:22 pilot3.tar.gz
[2025-10-12 03:15:45] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 18:40 queuedata.json
[2025-10-12 03:15:45] -rwx------ 1 boincer umatlas     36292 Oct 11 18:41 runpilot2-wrapper.sh
[2025-10-12 03:15:45] -rw-r--r-- 1 boincer umatlas       100 Oct 11 21:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 03:15:45] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 21:01 run_atlas
[2025-10-12 03:15:45] -rw-r--r-- 1 boincer umatlas       105 Oct 11 21:01 job.xml
[2025-10-12 03:15:45] -rw-r--r-- 3 boincer umatlas 223327780 Oct 11 21:01 EVNT.46676267._002660.pool.root.1
[2025-10-12 03:15:45] -rw-r--r-- 3 boincer umatlas 223327780 Oct 11 21:01 ATLAS.root_0
[2025-10-12 03:15:45] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 21:01 start_atlas.sh
[2025-10-12 03:15:45] drwxrwx--x 2 boincer umatlas      4096 Oct 11 21:01 shared
[2025-10-12 03:15:45] -rw-r--r-- 2 boincer umatlas    569681 Oct 11 21:01 input.tar.gz
[2025-10-12 03:15:45] -rw-r--r-- 1 boincer umatlas         0 Oct 11 21:01 boinc_lockfile
[2025-10-12 03:15:45] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 00:00 pandaJob.out
[2025-10-12 03:15:45] -rw------- 1 boincer umatlas    975512 Oct 12 00:00 agis_schedconf.cvmfs.json
[2025-10-12 03:15:45] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 03:11 init_data.xml
[2025-10-12 03:15:45] -rw------- 1 boincer umatlas 198221761 Oct 12 03:14 HITS.46676269._066173.pool.root.1
[2025-10-12 03:15:45] -rw-r--r-- 1 boincer umatlas       532 Oct 12 03:14 boinc_task_state.xml
[2025-10-12 03:15:45] -rw------- 1 boincer umatlas      1054 Oct 12 03:14 memory_monitor_summary.json
[2025-10-12 03:15:45] -rw------- 1 boincer umatlas   1560580 Oct 12 03:14 agis_ddmendpoints.agis.ALL.json
[2025-10-12 03:15:45] -rw------- 1 boincer umatlas    431403 Oct 12 03:14 log.46676269._066173.job.log.tgz.1
[2025-10-12 03:15:45] -rw------- 1 boincer umatlas        95 Oct 12 03:14 pilot_heartbeat.json
[2025-10-12 03:15:45] -rw------- 1 boincer umatlas      7860 Oct 12 03:14 heartbeat.json
[2025-10-12 03:15:45] -rw-r--r-- 1 boincer umatlas        29 Oct 12 03:15 wrapper_checkpoint.txt
[2025-10-12 03:15:45] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 03:15 boinc_mmap_file
[2025-10-12 03:15:45] -rw------- 1 boincer umatlas      5009 Oct 12 03:15 pilotlog.txt
[2025-10-12 03:15:45] -rw------- 1 boincer umatlas   1636155 Oct 12 03:15 log.46676269._066173.job.log.1
[2025-10-12 03:15:45] -rw------- 1 boincer umatlas       357 Oct 12 03:15 output.list
[2025-10-12 03:15:45] -rw-r--r-- 1 boincer umatlas       620 Oct 12 03:15 runtime_log
[2025-10-12 03:15:45] -rw------- 1 boincer umatlas   2088960 Oct 12 03:15 result.tar.gz
[2025-10-12 03:15:45] -rw-r--r-- 1 boincer umatlas      8789 Oct 12 03:15 runtime_log.err
[2025-10-12 03:15:45] -rw------- 1 boincer umatlas       787 Oct 12 03:15 pTKMDmvSxR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmiiSMDmOaFr3n.diag
[2025-10-12 03:15:45] -rw-r--r-- 1 boincer umatlas     23178 Oct 12 03:15 stderr.txt
[2025-10-12 03:15:45] HITS file was successfully produced:
[2025-10-12 03:15:45] -rw------- 1 boincer umatlas 198221761 Oct 12 03:14 shared/HITS.pool.root.1
[2025-10-12 03:15:45]  *** Contents of shared directory: ***
[2025-10-12 03:15:45] total 414292
[2025-10-12 03:15:45] -rw-r--r-- 3 boincer umatlas 223327780 Oct 11 21:01 ATLAS.root_0
[2025-10-12 03:15:45] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 21:01 start_atlas.sh
[2025-10-12 03:15:45] -rw-r--r-- 2 boincer umatlas    569681 Oct 11 21:01 input.tar.gz
[2025-10-12 03:15:45] -rw------- 1 boincer umatlas 198221761 Oct 12 03:14 HITS.pool.root.1
[2025-10-12 03:15:45] -rw------- 1 boincer umatlas   2088960 Oct 12 03:15 result.tar.gz
03:15:46 (30874): run_atlas exited; CPU time 88814.265850
03:15:46 (30874): called boinc_finish(0)

</stderr_txt>
]]>

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