Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:46:37 (2606480): wrapper (7.7.26015): starting
17:46:37 (2606480): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 17:46:37] Arguments: --nthreads 3
[2025-10-12 17:46:37] Threads: 3
[2025-10-12 17:46:37] Checking for CVMFS
[2025-10-12 17:46:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 17:46:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 17:46:37] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 17:46:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 17:46:37] 2.9.2.0 193215 8872 87596 151625 2 57 4195981 36864001 12 130560 0 6344480 99.990 302176 886 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 17:46:37] CVMFS is ok
[2025-10-12 17:46:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 17:46:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 17:46:37] Further information can be found at the LHC@home message board.
[2025-10-12 17:46:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 17:46:37] Checking for apptainer binary...
[2025-10-12 17:46:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 17:46:37] Running /usr/bin/apptainer --version
[2025-10-12 17:46:37] apptainer version 1.4.1-1.1
[2025-10-12 17:46:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 17:46:37] thA383
[2025-10-12 17:46:37] apptainer works
[2025-10-12 17:46:37] Set ATHENA_PROC_NUMBER=3
[2025-10-12 17:46:37] Set ATHENA_CORE_NUMBER=3
[2025-10-12 17:46:37] Starting ATLAS job with PandaID=6838851686
[2025-10-12 17:46:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:12:56]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:12:56] 2025-10-12 17:12:24,488 | INFO     | overall cleanup function is called
[2025-10-12 19:12:56] 2025-10-12 17:12:25,494 | INFO     | --- collectZombieJob: --- 10, [2616632]
[2025-10-12 19:12:56] 2025-10-12 17:12:25,495 | INFO     | zombie collector waiting for pid 2616632
[2025-10-12 19:12:56] 2025-10-12 17:12:25,495 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:12:56] 2025-10-12 17:12:25,495 | INFO     | collected zombie processes
[2025-10-12 19:12:56] 2025-10-12 17:12:25,495 | INFO     | will attempt to kill all subprocesses of pid=2616632
[2025-10-12 19:12:56] 2025-10-12 17:12:25,538 | INFO     | process IDs to be killed: [2616632] (in reverse order)
[2025-10-12 19:12:56] 2025-10-12 17:12:25,562 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:12:56] 2025-10-12 17:12:25,562 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:12:56] 2025-10-12 17:12:25,563 | INFO     | did not find any defunct processes belonging to 2616632
[2025-10-12 19:12:56] 2025-10-12 17:12:25,564 | INFO     | did not find any defunct processes belonging to 2616632
[2025-10-12 19:12:56] 2025-10-12 17:12:25,565 | INFO     | ready for new job
[2025-10-12 19:12:56] 2025-10-12 17:12:25,565 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:12:56] 2025-10-12 17:12:25,565 | INFO     | ***************************************
[2025-10-12 19:12:56] 2025-10-12 17:12:25,565 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:12:56] 2025-10-12 17:12:25,565 | INFO     | ***************************************
[2025-10-12 19:12:56] 2025-10-12 17:12:25,565 | INFO     | 
[2025-10-12 19:12:56] 2025-10-12 17:12:25,566 | INFO     | architecture information:
[2025-10-12 19:12:56] 2025-10-12 17:12:25,566 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:12:56] 2025-10-12 17:12:25,574 | INFO     | cat /etc/os-release:
[2025-10-12 19:12:56] NAME="CentOS Linux"
[2025-10-12 19:12:56] VERSION="7 (Core)"
[2025-10-12 19:12:56] ID="centos"
[2025-10-12 19:12:56] ID_LIKE="rhel fedora"
[2025-10-12 19:12:56] VERSION_ID="7"
[2025-10-12 19:12:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:12:56] ANSI_COLOR="0;31"
[2025-10-12 19:12:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:12:56] HOME_URL="https://www.centos.org/"
[2025-10-12 19:12:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:12:56] 
[2025-10-12 19:12:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:12:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:12:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:12:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:12:56] 
[2025-10-12 19:12:56] 2025-10-12 17:12:25,575 | INFO     | ***************************************
[2025-10-12 19:12:56] 2025-10-12 17:12:26,078 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 19:12:56] 2025-10-12 17:12:26,090 | INFO     | sufficient remaining disk space (255281070080 B)
[2025-10-12 19:12:56] 2025-10-12 17:12:26,091 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:12:56] 2025-10-12 17:12:26,091 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:12:56] 2025-10-12 17:12:26,091 | INFO     | update_server=False
[2025-10-12 19:12:56] 2025-10-12 17:12:26,091 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:12:56] 2025-10-12 17:12:26,091 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:12:56] 2025-10-12 17:12:26,091 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:12:56] 2025-10-12 17:12:26,230 | INFO     | all payload control threads have been joined
[2025-10-12 19:12:56] 2025-10-12 17:12:26,230 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 19:12:56] 2025-10-12 17:12:26,231 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 19:12:56] 2025-10-12 17:12:26,231 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:12:56] 2025-10-12 17:12:26,231 | INFO     | will abort loop
[2025-10-12 19:12:56] 2025-10-12 17:12:27,014 | INFO     | all job control threads have been joined
[2025-10-12 19:12:56] 2025-10-12 17:12:27,041 | INFO     | all data control threads have been joined
[2025-10-12 19:12:56] 2025-10-12 17:12:27,096 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:12:56] 2025-10-12 17:12:27,096 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:12:56] 2025-10-12 17:12:27,130 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:12:56] 2025-10-12 17:12:27,236 | INFO     | [payload] control thread has finished
[2025-10-12 19:12:56] 2025-10-12 17:12:27,236 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:12:56] 2025-10-12 17:12:27,690 | INFO     | [job] validate thread has finished
[2025-10-12 19:12:56] 2025-10-12 17:12:27,749 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:12:56] 2025-10-12 17:12:27,790 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:12:56] 2025-10-12 17:12:27,821 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:12:56] 2025-10-12 17:12:28,019 | INFO     | [job] control thread has finished
[2025-10-12 19:12:56] 2025-10-12 17:12:28,047 | INFO     | [data] control thread has finished
[2025-10-12 19:12:56] 2025-10-12 17:12:28,089 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:12:56] 2025-10-12 17:12:28,096 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:12:56] 2025-10-12 17:12:28,135 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:12:56] 2025-10-12 17:12:28,692 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:12:56] 2025-10-12 17:12:29,081 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:12:56] 2025-10-12 17:12:33,088 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:12:56] 2025-10-12 17:12:48,315 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:12:56] 2025-10-12 17:12:49,814 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140535789823808)>', '<ExcThread(monitor, started 140535088019200)>']
[2025-10-12 19:12:56] 2025-10-12 17:12:54,840 | INFO     | all workflow threads have been joined
[2025-10-12 19:12:56] 2025-10-12 17:12:54,841 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:12:56] 2025-10-12 17:12:54,841 | INFO     | traces error code: 0
[2025-10-12 19:12:56] 2025-10-12 17:12:54,841 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:12:56] 2025-10-12 17:12:56,384 | INFO     | PID=2610195 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 19:12:56] 2025-10-12 17:12:56,384 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:12:56] 2025-10-12 17:12:56,384 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:12:56] 2025-10-12 17:12:56,384 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:12:56] 2025-10-12 17:12:56,384 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:12:56] 2025-10-12 17:12:56,384 | INFO     | [monitor] control thread has ended
[2025-10-12 19:12:56] 2025-10-12 17:12:56,434 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:12:56] 2025-10-12 17:12:56,436 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:12:56] 2025-10-12 17:12:56,438 [wrapper] pilotpid: 2610195
[2025-10-12 19:12:56] 2025-10-12 17:12:56,440 [wrapper] Pilot exit status: 0
[2025-10-12 19:12:56] 2025-10-12 17:12:56,448 [wrapper] pandaids: 6838851686
[2025-10-12 19:12:56] 2025-10-12 17:12:56,464 [wrapper] cleanup supervisor_pilot 2628490 2610196
[2025-10-12 19:12:56] 2025-10-12 17:12:56,466 [wrapper] Test setup, not cleaning
[2025-10-12 19:12:56] 2025-10-12 17:12:56,469 [wrapper] apfmon messages muted
[2025-10-12 19:12:56] 2025-10-12 17:12:56,471 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:12:56] 2025-10-12 17:12:56,473 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:12:56]  *** Error codes and diagnostics ***
[2025-10-12 19:12:56]     "exeErrorCode": 0,
[2025-10-12 19:12:56]     "exeErrorDiag": "",
[2025-10-12 19:12:56]     "pilotErrorCode": 0,
[2025-10-12 19:12:56]     "pilotErrorDiag": "",
[2025-10-12 19:12:56]  *** Listing of results directory ***
[2025-10-12 19:12:56] total 414616
[2025-10-12 19:12:56] -rw-r--r-- 1 boinc boinc    557409 Oct 11 21:43 pilot3.tar.gz
[2025-10-12 19:12:56] -rwx------ 1 boinc boinc     36292 Oct 11 21:50 runpilot2-wrapper.sh
[2025-10-12 19:12:56] -rw-r--r-- 1 boinc boinc      5112 Oct 11 21:50 queuedata.json
[2025-10-12 19:12:56] -rw-r--r-- 1 boinc boinc       100 Oct 12 17:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:12:56] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 17:46 run_atlas
[2025-10-12 19:12:56] -rw-r--r-- 1 boinc boinc       105 Oct 12 17:46 job.xml
[2025-10-12 19:12:56] -rw-r--r-- 2 boinc boinc 219362381 Oct 12 17:46 EVNT.46676267._002567.pool.root.1
[2025-10-12 19:12:56] drwxrwx--x 2 boinc boinc      4096 Oct 12 17:46 shared
[2025-10-12 19:12:56] -rw-r--r-- 2 boinc boinc    569675 Oct 12 17:46 input.tar.gz
[2025-10-12 19:12:56] -rw-r--r-- 2 boinc boinc     15120 Oct 12 17:46 start_atlas.sh
[2025-10-12 19:12:56] -rw-r--r-- 1 boinc boinc         0 Oct 12 17:46 boinc_setup_complete
[2025-10-12 19:12:56] -rw-r--r-- 1 boinc boinc      6437 Oct 12 17:46 init_data.xml
[2025-10-12 19:12:56] -rw-r--r-- 1 boinc boinc         0 Oct 12 17:46 boinc_lockfile
[2025-10-12 19:12:56] -rw-r--r-- 1 boinc boinc      2550 Oct 12 17:46 pandaJob.out
[2025-10-12 19:12:56] -rw------- 1 boinc boinc    975528 Oct 12 17:46 agis_schedconf.cvmfs.json
[2025-10-12 19:12:56] -rw------- 1 boinc boinc   1560580 Oct 12 17:46 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:12:56] drwx------ 5 boinc boinc      4096 Oct 12 17:46 pilot3
[2025-10-12 19:12:56] -rw------- 1 boinc boinc 199318075 Oct 12 19:11 HITS.46676269._063859.pool.root.1
[2025-10-12 19:12:56] -rw-r--r-- 1 boinc boinc       529 Oct 12 19:12 boinc_task_state.xml
[2025-10-12 19:12:56] -rw------- 1 boinc boinc        95 Oct 12 19:12 pilot_heartbeat.json
[2025-10-12 19:12:56] -rw------- 1 boinc boinc      1034 Oct 12 19:12 memory_monitor_summary.json
[2025-10-12 19:12:56] -rw------- 1 boinc boinc    246045 Oct 12 19:12 log.46676269._063859.job.log.tgz.1
[2025-10-12 19:12:56] -rw------- 1 boinc boinc      7763 Oct 12 19:12 heartbeat.json
[2025-10-12 19:12:56] -rw-r--r-- 1 boinc boinc      8192 Oct 12 19:12 boinc_mmap_file
[2025-10-12 19:12:56] -rw-r--r-- 1 boinc boinc        27 Oct 12 19:12 wrapper_checkpoint.txt
[2025-10-12 19:12:56] -rw------- 1 boinc boinc       747 Oct 12 19:12 pilotlog.txt
[2025-10-12 19:12:56] -rw------- 1 boinc boinc    753532 Oct 12 19:12 log.46676269._063859.job.log.1
[2025-10-12 19:12:56] -rw------- 1 boinc boinc       357 Oct 12 19:12 output.list
[2025-10-12 19:12:56] -rw-r--r-- 1 boinc boinc       620 Oct 12 19:12 runtime_log
[2025-10-12 19:12:56] -rw------- 1 boinc boinc   1013760 Oct 12 19:12 result.tar.gz
[2025-10-12 19:12:56] -rw------- 1 boinc boinc       658 Oct 12 19:12 xmnLDmomuR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYShNDmLx6vjm.diag
[2025-10-12 19:12:56] -rw-r--r-- 1 boinc boinc      8777 Oct 12 19:12 runtime_log.err
[2025-10-12 19:12:56] -rw-r--r-- 1 boinc boinc     10936 Oct 12 19:12 stderr.txt
[2025-10-12 19:12:56] HITS file was successfully produced:
[2025-10-12 19:12:56] -rw------- 1 boinc boinc 199318075 Oct 12 19:11 shared/HITS.pool.root.1
[2025-10-12 19:12:56]  *** Contents of shared directory: ***
[2025-10-12 19:12:56] total 410448
[2025-10-12 19:12:56] -rw-r--r-- 2 boinc boinc 219362381 Oct 12 17:46 ATLAS.root_0
[2025-10-12 19:12:56] -rw-r--r-- 2 boinc boinc    569675 Oct 12 17:46 input.tar.gz
[2025-10-12 19:12:56] -rw-r--r-- 2 boinc boinc     15120 Oct 12 17:46 start_atlas.sh
[2025-10-12 19:12:56] -rw------- 1 boinc boinc 199318075 Oct 12 19:11 HITS.pool.root.1
[2025-10-12 19:12:56] -rw------- 1 boinc boinc   1013760 Oct 12 19:12 result.tar.gz
19:12:58 (2606480): run_atlas exited; CPU time 14495.625915
19:12:58 (2606480): called boinc_finish(0)

</stderr_txt>
]]>

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