Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:59:38 (8979): wrapper (7.7.26015): starting
20:59:38 (8979): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 20:59:38] Arguments: --nthreads 12
[2025-10-11 20:59:38] Threads: 12
[2025-10-11 20:59:38] Checking for CVMFS
[2025-10-11 20:59:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 20:59:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 20:59:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 20:59:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 20:59:39] 2.11.2.0 2998 37906 88340 151601 0 59 14069017 20275201 1 130560 0 23218055 99.990 1230930 44981 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 20:59:39] CVMFS is ok
[2025-10-11 20:59:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 20:59:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 20:59:39] Further information can be found at the LHC@home message board.
[2025-10-11 20:59:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 20:59:39] Checking for apptainer binary...
[2025-10-11 20:59:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 20:59:39] Running /usr/bin/apptainer --version
[2025-10-11 20:59:39] apptainer version 1.3.2-1.el7
[2025-10-11 20:59:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 20:59:40] c-205-12.aglt2.org
[2025-10-11 20:59:40] apptainer works
[2025-10-11 20:59:40] Set ATHENA_PROC_NUMBER=12
[2025-10-11 20:59:40] Set ATHENA_CORE_NUMBER=12
[2025-10-11 20:59:41] Starting ATLAS job with PandaID=6838632951
[2025-10-11 20:59:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 22:08:08]  *** The last 200 lines of the pilot log: ***
[2025-10-11 22:08:08]  status_code=0
[2025-10-11 22:08:08]  storage_token=
[2025-10-11 22:08:08]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6838632951/log.46676269._061160.job.log.tgz.1
[2025-10-11 22:08:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fe/05/log.46676269._061160.job.log.tgz.1
[2025-10-11 22:08:08]  workdir=None
[2025-10-11 22:08:08] ]
[2025-10-11 22:08:08] 2025-10-12 02:07:16,832 | INFO     | transferring file log.46676269._061160.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6838632951/log.46676269._061160.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 22:08:08] 2025-10-12 02:07:16,832 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6838632951/log.46676269._061160.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._061160.job
[2025-10-11 22:08:08] 2025-10-12 02:07:16,856 | INFO     | adding to output.list: log.46676269._061160.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fe/05/log.46676269._061160.job.log.tg
[2025-10-11 22:08:08] 2025-10-12 02:07:16,857 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 22:08:08] 2025-10-12 02:07:16,857 | INFO     | summary of transferred files:
[2025-10-11 22:08:08] 2025-10-12 02:07:16,857 | INFO     |  -- lfn=log.46676269._061160.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 22:08:08] 2025-10-12 02:07:16,857 | INFO     | stage-out finished correctly
[2025-10-11 22:08:08] 2025-10-12 02:07:17,832 | INFO     | time since job start (4041s) is within the limit (172800.0s)
[2025-10-11 22:08:08] 2025-10-12 02:07:18,188 | INFO     | monitor loop #303: job 0:6838632951 is in state 'finished'
[2025-10-11 22:08:08] 2025-10-12 02:07:18,188 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 22:08:08] 2025-10-12 02:07:19,402 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 22:08:08] 2025-10-12 02:07:19,838 | INFO     | time since job start (4043s) is within the limit (172800.0s)
[2025-10-11 22:08:08] 2025-10-12 02:07:20,691 | INFO     | monitor loop #304: job 0:6838632951 is in state 'finished'
[2025-10-11 22:08:08] 2025-10-12 02:07:20,692 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 22:08:08] 2025-10-12 02:07:21,844 | INFO     | time since job start (4045s) is within the limit (172800.0s)
[2025-10-11 22:08:08] 2025-10-12 02:07:21,851 | INFO     | job 6838632951 has state=finished
[2025-10-11 22:08:08] 2025-10-12 02:07:21,851 | INFO     | preparing for final server update for job 6838632951 in state='finished'
[2025-10-11 22:08:08] 2025-10-12 02:07:21,851 | INFO     | this job has now completed (state=finished)
[2025-10-11 22:08:08] 2025-10-12 02:07:21,852 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 22:08:08] 2025-10-12 02:07:21,852 | INFO     | log transfer has been attempted: DONE
[2025-10-11 22:08:08] 2025-10-12 02:07:21,852 | INFO     | job 6838632951 has finished - writing final server update
[2025-10-11 22:08:08] 2025-10-12 02:07:21,852 | INFO     | total number of processed events: 400 (read)
[2025-10-11 22:08:08] 2025-10-12 02:07:21,853 | INFO     | executing command: lscpu
[2025-10-11 22:08:08] 2025-10-12 02:07:21,882 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 22:08:08] 2025-10-12 02:07:23,195 | INFO     | monitor loop #305: job 0:6838632951 is in state 'finished'
[2025-10-11 22:08:08] 2025-10-12 02:07:23,195 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 22:08:08] 2025-10-12 02:07:23,849 | INFO     | time since job start (4047s) is within the limit (172800.0s)
[2025-10-11 22:08:08] 2025-10-12 02:07:25,698 | INFO     | monitor loop #306: job 0:6838632951 is in state 'finished'
[2025-10-11 22:08:08] 2025-10-12 02:07:25,699 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 22:08:08] 2025-10-12 02:07:25,855 | INFO     | time since job start (4049s) is within the limit (172800.0s)
[2025-10-11 22:08:08] 2025-10-12 02:07:26,652 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-11 22:08:08] 2025-10-12 02:07:26,656 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-11 22:08:08] 2025-10-12 02:07:26,659 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838632951/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 22:08:08] 2025-10-12 02:07:26,660 | INFO     | extracted standard info from prmon json
[2025-10-11 22:08:08] 2025-10-12 02:07:26,660 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 22:08:08] 2025-10-12 02:07:26,660 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 22:08:08] 2025-10-12 02:07:26,661 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 22:08:08] 2025-10-12 02:07:26,661 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 22:08:08] 2025-10-12 02:07:26,662 | INFO     | fitting pss+swap vs Time
[2025-10-11 22:08:08] 2025-10-12 02:07:26,663 | INFO     | sum of square deviations: 63666310.0
[2025-10-11 22:08:08] 2025-10-12 02:07:26,663 | INFO     | sum of deviations: -3341888415.9999995
[2025-10-11 22:08:08] 2025-10-12 02:07:26,663 | INFO     | mean x: 1760232899.0
[2025-10-11 22:08:08] 2025-10-12 02:07:26,663 | INFO     | mean y: 2745024.86440678
[2025-10-11 22:08:08] 2025-10-12 02:07:26,663 | INFO     | -- intersect: 92398580980.02182
[2025-10-11 22:08:08] 2025-10-12 02:07:26,664 | INFO     | intersect: 92398580980.02182
[2025-10-11 22:08:08] 2025-10-12 02:07:26,664 | INFO     | chi2: 0.04399705699938203
[2025-10-11 22:08:08] 2025-10-12 02:07:26,664 | INFO     | -- intersect: 92398580980.02182
[2025-10-11 22:08:08] 2025-10-12 02:07:26,664 | INFO     | current memory leak: -52.49 B/s (using 59 data points, chi2=0.04)
[2025-10-11 22:08:08] 2025-10-12 02:07:26,664 | INFO     | could have reported an average CPU frequency of 2041 MHz (6 samples)
[2025-10-11 22:08:08] 2025-10-12 02:07:26,665 | INFO     | ..............................
[2025-10-11 22:08:08] 2025-10-12 02:07:26,665 | INFO     | . Timing measurements:
[2025-10-11 22:08:08] 2025-10-12 02:07:26,665 | INFO     | . get job = 0 s
[2025-10-11 22:08:08] 2025-10-12 02:07:26,665 | INFO     | . initial setup = 2 s
[2025-10-11 22:08:08] 2025-10-12 02:07:26,665 | INFO     | . payload setup = 7 s
[2025-10-11 22:08:08] 2025-10-12 02:07:26,665 | INFO     | . stage-in = 2 s
[2025-10-11 22:08:08] 2025-10-12 02:07:26,665 | INFO     | . payload execution = 4012 s
[2025-10-11 22:08:08] 2025-10-12 02:07:26,665 | INFO     | . stage-out = 0 s
[2025-10-11 22:08:08] 2025-10-12 02:07:26,665 | INFO     | . log creation = 0 s
[2025-10-11 22:08:08] 2025-10-12 02:07:26,666 | INFO     | ..............................
[2025-10-11 22:08:08] 2025-10-12 02:07:26,925 | INFO     | 
[2025-10-11 22:08:08] 2025-10-12 02:07:26,926 | INFO     | job summary report
[2025-10-11 22:08:08] 2025-10-12 02:07:26,926 | INFO     | --------------------------------------------------
[2025-10-11 22:08:08] 2025-10-12 02:07:26,926 | INFO     | PanDA job id: 6838632951
[2025-10-11 22:08:08] 2025-10-12 02:07:26,926 | INFO     | task id: 46676269
[2025-10-11 22:08:08] 2025-10-12 02:07:26,926 | INFO     | errors: (none)
[2025-10-11 22:08:08] 2025-10-12 02:07:26,927 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 22:08:08] 2025-10-12 02:07:26,927 | INFO     | pilot state: finished 
[2025-10-11 22:08:08] 2025-10-12 02:07:26,927 | INFO     | transexitcode: 0
[2025-10-11 22:08:08] 2025-10-12 02:07:26,927 | INFO     | exeerrorcode: 0
[2025-10-11 22:08:08] 2025-10-12 02:07:26,927 | INFO     | exeerrordiag: 
[2025-10-11 22:08:08] 2025-10-12 02:07:26,927 | INFO     | exitcode: 0
[2025-10-11 22:08:08] 2025-10-12 02:07:26,927 | INFO     | exitmsg: OK
[2025-10-11 22:08:08] 2025-10-12 02:07:26,928 | INFO     | cpuconsumptiontime: 43761 s
[2025-10-11 22:08:08] 2025-10-12 02:07:26,928 | INFO     | nevents: 400
[2025-10-11 22:08:08] 2025-10-12 02:07:26,928 | INFO     | neventsw: 0
[2025-10-11 22:08:08] 2025-10-12 02:07:26,928 | INFO     | pid: 19221
[2025-10-11 22:08:08] 2025-10-12 02:07:26,928 | INFO     | pgrp: 19221
[2025-10-11 22:08:08] 2025-10-12 02:07:26,928 | INFO     | corecount: 12
[2025-10-11 22:08:08] 2025-10-12 02:07:26,929 | INFO     | event service: False
[2025-10-11 22:08:08] 2025-10-12 02:07:26,929 | INFO     | sizes: {0: 2348806, 7: 2349068, 11: 2349096, 4023: 2374937, 4024: 2383935, 4027: 2383991, 4034: 2384313}
[2025-10-11 22:08:08] 2025-10-12 02:07:26,929 | INFO     | --------------------------------------------------
[2025-10-11 22:08:08] 2025-10-12 02:07:26,929 | INFO     | 
[2025-10-11 22:08:08] 2025-10-12 02:07:26,929 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 22:08:08] 2025-10-12 02:07:27,008 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 22:08:08] 2025-10-12 02:07:27,008 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 22:08:08] 2025-10-12 02:07:27,008 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 22:08:08] 2025-10-12 02:07:27,009 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 22:08:08] 2025-10-12 02:07:27,009 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 22:08:08] 2025-10-12 02:07:27,009 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 22:08:08] 2025-10-12 02:07:27,009 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 22:08:08] 2025-10-12 02:07:27,009 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 22:08:08] 2025-10-12 02:07:27,009 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 22:08:08] 2025-10-12 02:07:27,009 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 22:08:08] 2025-10-12 02:07:27,010 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 22:08:08] 2025-10-12 02:07:27,010 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 22:08:08] 2025-10-12 02:07:27,010 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 22:08:08] 2025-10-12 02:07:27,010 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 22:08:08] 2025-10-12 02:07:27,010 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 22:08:08] 2025-10-12 02:07:27,010 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 22:08:08] 2025-10-12 02:07:27,010 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 22:08:08] 2025-10-12 02:07:27,011 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 22:08:08] 2025-10-12 02:07:27,011 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 22:08:08] 2025-10-12 02:07:27,011 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 22:08:08] 2025-10-12 02:07:27,011 | INFO     | job 6838632951 has completed (purged errors)
[2025-10-11 22:08:08] 2025-10-12 02:07:27,011 | INFO     | overall cleanup function is called
[2025-10-11 22:08:08] 2025-10-12 02:07:28,019 | INFO     | --- collectZombieJob: --- 10, [19221]
[2025-10-11 22:08:08] 2025-10-12 02:07:28,019 | INFO     | zombie collector waiting for pid 19221
[2025-10-11 22:08:08] 2025-10-12 02:07:28,019 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 22:08:08] 2025-10-12 02:07:28,019 | INFO     | collected zombie processes
[2025-10-11 22:08:08] 2025-10-12 02:07:28,020 | INFO     | will attempt to kill all subprocesses of pid=19221
[2025-10-11 22:08:08] 2025-10-12 02:07:28,113 | INFO     | process IDs to be killed: [19221] (in reverse order)
[2025-10-11 22:08:08] 2025-10-12 02:07:28,168 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 22:08:08] 2025-10-12 02:07:28,169 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 22:08:08] 2025-10-12 02:07:28,172 | INFO     | did not find any defunct processes belonging to 19221
[2025-10-11 22:08:08] 2025-10-12 02:07:28,174 | INFO     | did not find any defunct processes belonging to 19221
[2025-10-11 22:08:08] 2025-10-12 02:07:28,174 | INFO     | ready for new job
[2025-10-11 22:08:08] 2025-10-12 02:07:28,174 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 22:08:08] 2025-10-12 02:07:28,175 | INFO     | ***************************************
[2025-10-11 22:08:08] 2025-10-12 02:07:28,175 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 22:08:08] 2025-10-12 02:07:28,176 | INFO     | ***************************************
[2025-10-11 22:08:08] 2025-10-12 02:07:28,176 | INFO     | 
[2025-10-11 22:08:08] 2025-10-12 02:07:28,176 | INFO     | architecture information:
[2025-10-11 22:08:08] 2025-10-12 02:07:28,177 | INFO     | executing command: cat /etc/os-release
[2025-10-11 22:08:08] 2025-10-12 02:07:28,194 | INFO     | cat /etc/os-release:
[2025-10-11 22:08:08] NAME="CentOS Linux"
[2025-10-11 22:08:08] VERSION="7 (Core)"
[2025-10-11 22:08:08] ID="centos"
[2025-10-11 22:08:08] ID_LIKE="rhel fedora"
[2025-10-11 22:08:08] VERSION_ID="7"
[2025-10-11 22:08:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 22:08:08] ANSI_COLOR="0;31"
[2025-10-11 22:08:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 22:08:08] HOME_URL="https://www.centos.org/"
[2025-10-11 22:08:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 22:08:08] 
[2025-10-11 22:08:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 22:08:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 22:08:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 22:08:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 22:08:08] 
[2025-10-11 22:08:08] 2025-10-12 02:07:28,194 | INFO     | ***************************************
[2025-10-11 22:08:08] 2025-10-12 02:07:28,697 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 22:08:08] 2025-10-12 02:07:28,716 | INFO     | sufficient remaining disk space (29367468032 B)
[2025-10-11 22:08:08] 2025-10-12 02:07:28,717 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 22:08:08] 2025-10-12 02:07:28,717 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 22:08:08] 2025-10-12 02:07:28,717 | INFO     | update_server=False
[2025-10-11 22:08:08] 2025-10-12 02:07:28,717 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 22:08:08] 2025-10-12 02:07:28,718 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:08:08] 2025-10-12 02:07:29,219 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:08:08] 2025-10-12 02:07:29,219 | INFO     | aborting loop
[2025-10-11 22:08:08] 2025-10-12 02:07:29,375 | INFO     | all job control threads have been joined
[2025-10-11 22:08:08] 2025-10-12 02:07:29,536 | INFO     | all payload control threads have been joined
[2025-10-11 22:08:08] 2025-10-12 02:07:29,630 | INFO     | all data control threads have been joined
[2025-10-11 22:08:08] 2025-10-12 02:07:29,723 | INFO     | [job] retrieve thread has finished
[2025-10-11 22:08:08] 2025-10-12 02:07:29,723 | INFO     | [job] queue monitor thread has finished
[2025-10-11 22:08:08] 2025-10-12 02:07:29,744 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 22:08:08] 2025-10-12 02:07:29,746 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 22:08:08] 2025-10-12 02:07:29,913 | INFO     | [payload] validate_post thread has finished
[2025-10-11 22:08:08] 2025-10-12 02:07:29,963 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 22:08:08] 2025-10-12 02:07:29,993 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 22:08:08] 2025-10-12 02:07:30,046 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 22:08:08] 2025-10-12 02:07:30,224 | INFO     | [job] job monitor thread has finished
[2025-10-11 22:08:08] 2025-10-12 02:07:30,381 | INFO     | [job] control thread has finished
[2025-10-11 22:08:08] 2025-10-12 02:07:30,542 | INFO     | [payload] control thread has finished
[2025-10-11 22:08:08] 2025-10-12 02:07:30,633 | INFO     | [data] control thread has finished
[2025-10-11 22:08:08] 2025-10-12 02:07:30,914 | INFO     | [data] copytool_in thread has finished
[2025-10-11 22:08:08] 2025-10-12 02:07:30,917 | INFO     | [job] validate thread has finished
[2025-10-11 22:08:08] 2025-10-12 02:07:30,943 | INFO     | [payload] failed_post thread has finished
[2025-10-11 22:08:08] 2025-10-12 02:07:31,968 | INFO     | [data] copytool_out thread has finished
[2025-10-11 22:08:08] 2025-10-12 02:07:33,999 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 22:08:08] 2025-10-12 02:07:39,434 | INFO     | job.realtimelogging is not enabled
[2025-10-11 22:08:08] 2025-10-12 02:07:40,435 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 22:08:08] 2025-10-12 02:07:59,062 | INFO     | PID=12669 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 22:08:08] 2025-10-12 02:07:59,062 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 22:08:08] 2025-10-12 02:07:59,062 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 22:08:08] 2025-10-12 02:07:59,063 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 22:08:08] 2025-10-12 02:08:02,470 | INFO     | [monitor] cgroup control has ended
[2025-10-11 22:08:08] 2025-10-12 02:08:02,772 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139630643017536)>', '<ExcThread(monitor, started 139629948806912)>']
[2025-10-11 22:08:08] 2025-10-12 02:08:03,083 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 22:08:08] 2025-10-12 02:08:03,083 | INFO     | [monitor] control thread has ended
[2025-10-11 22:08:08] 2025-10-12 02:08:07,798 | INFO     | all workflow threads have been joined
[2025-10-11 22:08:08] 2025-10-12 02:08:07,798 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 22:08:08] 2025-10-12 02:08:07,798 | INFO     | traces error code: 0
[2025-10-11 22:08:08] 2025-10-12 02:08:07,798 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 22:08:08] 2025-10-12 02:08:07,887 [wrapper] ==== pilot stdout END ====
[2025-10-11 22:08:08] 2025-10-12 02:08:07,891 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 22:08:08] 2025-10-12 02:08:07,895 [wrapper] pilotpid: 12669
[2025-10-11 22:08:08] 2025-10-12 02:08:07,898 [wrapper] Pilot exit status: 0
[2025-10-11 22:08:08] 2025-10-12 02:08:07,913 [wrapper] pandaids: 6838632951
[2025-10-11 22:08:08] 2025-10-12 02:08:07,959 [wrapper] cleanup supervisor_pilot 26315 12670
[2025-10-11 22:08:08] 2025-10-12 02:08:07,963 [wrapper] Test setup, not cleaning
[2025-10-11 22:08:08] 2025-10-12 02:08:07,967 [wrapper] apfmon messages muted
[2025-10-11 22:08:08] 2025-10-12 02:08:07,971 [wrapper] ==== wrapper stdout END ====
[2025-10-11 22:08:08] 2025-10-12 02:08:07,976 [wrapper] ==== wrapper stderr END ====
[2025-10-11 22:08:08]  *** Error codes and diagnostics ***
[2025-10-11 22:08:08]     "exeErrorCode": 0,
[2025-10-11 22:08:08]     "exeErrorDiag": "",
[2025-10-11 22:08:08]     "pilotErrorCode": 0,
[2025-10-11 22:08:08]     "pilotErrorDiag": "",
[2025-10-11 22:08:08]  *** Listing of results directory ***
[2025-10-11 22:08:08] total 407752
[2025-10-11 22:08:08] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 12:20 pilot3.tar.gz
[2025-10-11 22:08:08] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 12:37 queuedata.json
[2025-10-11 22:08:08] -rwx------ 1 boincer umatlas     36292 Oct 11 12:38 runpilot2-wrapper.sh
[2025-10-11 22:08:08] -rw-r--r-- 1 boincer umatlas       100 Oct 11 20:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 22:08:08] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 20:59 run_atlas
[2025-10-11 22:08:08] -rw-r--r-- 1 boincer umatlas       105 Oct 11 20:59 job.xml
[2025-10-11 22:08:08] -rw-r--r-- 2 boincer umatlas 219382531 Oct 11 20:59 EVNT.46676267._002456.pool.root.1
[2025-10-11 22:08:08] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 20:59 start_atlas.sh
[2025-10-11 22:08:08] drwxrwx--x 2 boincer umatlas      4096 Oct 11 20:59 shared
[2025-10-11 22:08:08] -rw-r--r-- 2 boincer umatlas    569680 Oct 11 20:59 input.tar.gz
[2025-10-11 22:08:08] -rw-r--r-- 1 boincer umatlas         0 Oct 11 20:59 boinc_lockfile
[2025-10-11 22:08:08] -rw-r--r-- 1 boincer umatlas      2549 Oct 11 20:59 pandaJob.out
[2025-10-11 22:08:08] -rw------- 1 boincer umatlas    975496 Oct 11 20:59 agis_schedconf.cvmfs.json
[2025-10-11 22:08:08] -rw------- 1 boincer umatlas   1560580 Oct 11 20:59 agis_ddmendpoints.agis.ALL.json
[2025-10-11 22:08:08] drwx------ 5 boincer umatlas      4096 Oct 11 20:59 pilot3
[2025-10-11 22:08:08] -rw-r--r-- 1 boincer umatlas      5953 Oct 11 22:04 init_data.xml
[2025-10-11 22:08:08] -rw------- 1 boincer umatlas 192299150 Oct 11 22:06 HITS.46676269._061160.pool.root.1
[2025-10-11 22:08:08] -rw-r--r-- 1 boincer umatlas       530 Oct 11 22:07 boinc_task_state.xml
[2025-10-11 22:08:08] -rw------- 1 boincer umatlas      1050 Oct 11 22:07 memory_monitor_summary.json
[2025-10-11 22:08:08] -rw------- 1 boincer umatlas    379820 Oct 11 22:07 log.46676269._061160.job.log.tgz.1
[2025-10-11 22:08:08] -rw------- 1 boincer umatlas      7855 Oct 11 22:07 heartbeat.json
[2025-10-11 22:08:08] -rw------- 1 boincer umatlas        95 Oct 11 22:07 pilot_heartbeat.json
[2025-10-11 22:08:08] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 22:08 boinc_mmap_file
[2025-10-11 22:08:08] -rw-r--r-- 1 boincer umatlas        27 Oct 11 22:08 wrapper_checkpoint.txt
[2025-10-11 22:08:08] -rw------- 1 boincer umatlas      4818 Oct 11 22:08 pilotlog.txt
[2025-10-11 22:08:08] -rw------- 1 boincer umatlas    595326 Oct 11 22:08 log.46676269._061160.job.log.1
[2025-10-11 22:08:08] -rw------- 1 boincer umatlas       357 Oct 11 22:08 output.list
[2025-10-11 22:08:08] -rw-r--r-- 1 boincer umatlas       620 Oct 11 22:08 runtime_log
[2025-10-11 22:08:08] -rw------- 1 boincer umatlas    993280 Oct 11 22:08 result.tar.gz
[2025-10-11 22:08:08] -rw-r--r-- 1 boincer umatlas      8705 Oct 11 22:08 runtime_log.err
[2025-10-11 22:08:08] -rw------- 1 boincer umatlas       659 Oct 11 22:08 FRGNDmHnrR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmsygNDmH80ZVn.diag
[2025-10-11 22:08:08] -rw-r--r-- 1 boincer umatlas     22076 Oct 11 22:08 stderr.txt
[2025-10-11 22:08:08] HITS file was successfully produced:
[2025-10-11 22:08:08] -rw------- 1 boincer umatlas 192299150 Oct 11 22:06 shared/HITS.pool.root.1
[2025-10-11 22:08:08]  *** Contents of shared directory: ***
[2025-10-11 22:08:08] total 403592
[2025-10-11 22:08:08] -rw-r--r-- 2 boincer umatlas 219382531 Oct 11 20:59 ATLAS.root_0
[2025-10-11 22:08:08] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 20:59 start_atlas.sh
[2025-10-11 22:08:08] -rw-r--r-- 2 boincer umatlas    569680 Oct 11 20:59 input.tar.gz
[2025-10-11 22:08:08] -rw------- 1 boincer umatlas 192299150 Oct 11 22:06 HITS.pool.root.1
[2025-10-11 22:08:08] -rw------- 1 boincer umatlas    993280 Oct 11 22:08 result.tar.gz
22:08:09 (8979): run_atlas exited; CPU time 43762.171134
22:08:09 (8979): called boinc_finish(0)

</stderr_txt>
]]>

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