Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:08:38 (1754841): wrapper (7.7.26015): starting
12:08:38 (1754841): wrapper: running run_atlas (--nthreads 2)
[2025-10-12 12:08:38] Arguments: --nthreads 2
[2025-10-12 12:08:38] Threads: 2
[2025-10-12 12:08:38] Checking for CVMFS
[2025-10-12 12:08:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:08:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:08:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:08:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:08:39] 2.9.2.0 779100 4240 59676 151616 2 57 19490239 36864000 0 130560 0 2576123 99.989 142351 881 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 12:08:39] CVMFS is ok
[2025-10-12 12:08:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:08:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:08:39] Further information can be found at the LHC@home message board.
[2025-10-12 12:08:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:08:39] Checking for apptainer binary...
[2025-10-12 12:08:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:08:39] Running /usr/bin/apptainer --version
[2025-10-12 12:08:39] apptainer version 1.4.1-1.1
[2025-10-12 12:08:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:08:39] atlasA229
[2025-10-12 12:08:39] apptainer works
[2025-10-12 12:08:39] Set ATHENA_PROC_NUMBER=2
[2025-10-12 12:08:39] Set ATHENA_CORE_NUMBER=2
[2025-10-12 12:08:39] Starting ATLAS job with PandaID=6838452307
[2025-10-12 12:08:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 14:13:24]  *** The last 200 lines of the pilot log: ***
[2025-10-12 14:13:24] 2025-10-12 12:12:53,551 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 14:13:24] 2025-10-12 12:12:53,552 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 14:13:24] 2025-10-12 12:12:53,552 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 14:13:24] 2025-10-12 12:12:53,552 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 14:13:24] 2025-10-12 12:12:53,552 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 14:13:24] 2025-10-12 12:12:53,552 | INFO     | job 6838452307 has completed (purged errors)
[2025-10-12 14:13:24] 2025-10-12 12:12:53,552 | INFO     | overall cleanup function is called
[2025-10-12 14:13:24] 2025-10-12 12:12:54,558 | INFO     | --- collectZombieJob: --- 10, [1764952]
[2025-10-12 14:13:24] 2025-10-12 12:12:54,558 | INFO     | zombie collector waiting for pid 1764952
[2025-10-12 14:13:24] 2025-10-12 12:12:54,558 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 14:13:24] 2025-10-12 12:12:54,559 | INFO     | collected zombie processes
[2025-10-12 14:13:24] 2025-10-12 12:12:54,559 | INFO     | will attempt to kill all subprocesses of pid=1764952
[2025-10-12 14:13:24] 2025-10-12 12:12:54,591 | INFO     | process IDs to be killed: [1764952] (in reverse order)
[2025-10-12 14:13:24] 2025-10-12 12:12:54,614 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 14:13:24] 2025-10-12 12:12:54,614 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 14:13:24] 2025-10-12 12:12:54,614 | INFO     | did not find any defunct processes belonging to 1764952
[2025-10-12 14:13:24] 2025-10-12 12:12:54,615 | INFO     | did not find any defunct processes belonging to 1764952
[2025-10-12 14:13:24] 2025-10-12 12:12:54,615 | INFO     | ready for new job
[2025-10-12 14:13:24] 2025-10-12 12:12:54,615 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 14:13:24] 2025-10-12 12:12:54,616 | INFO     | ***************************************
[2025-10-12 14:13:24] 2025-10-12 12:12:54,616 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 14:13:24] 2025-10-12 12:12:54,616 | INFO     | ***************************************
[2025-10-12 14:13:24] 2025-10-12 12:12:54,616 | INFO     | 
[2025-10-12 14:13:24] 2025-10-12 12:12:54,616 | INFO     | architecture information:
[2025-10-12 14:13:24] 2025-10-12 12:12:54,616 | INFO     | executing command: cat /etc/os-release
[2025-10-12 14:13:24] 2025-10-12 12:12:54,625 | INFO     | cat /etc/os-release:
[2025-10-12 14:13:24] NAME="CentOS Linux"
[2025-10-12 14:13:24] VERSION="7 (Core)"
[2025-10-12 14:13:24] ID="centos"
[2025-10-12 14:13:24] ID_LIKE="rhel fedora"
[2025-10-12 14:13:24] VERSION_ID="7"
[2025-10-12 14:13:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 14:13:24] ANSI_COLOR="0;31"
[2025-10-12 14:13:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 14:13:24] HOME_URL="https://www.centos.org/"
[2025-10-12 14:13:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 14:13:24] 
[2025-10-12 14:13:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 14:13:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 14:13:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 14:13:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 14:13:24] 
[2025-10-12 14:13:24] 2025-10-12 12:12:54,625 | INFO     | ***************************************
[2025-10-12 14:13:24] 2025-10-12 12:12:55,128 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 14:13:24] 2025-10-12 12:12:55,140 | INFO     | sufficient remaining disk space (341209776128 B)
[2025-10-12 14:13:24] 2025-10-12 12:12:55,140 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 14:13:24] 2025-10-12 12:12:55,140 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 14:13:24] 2025-10-12 12:12:55,140 | INFO     | update_server=False
[2025-10-12 14:13:24] 2025-10-12 12:12:55,140 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 14:13:24] 2025-10-12 12:12:55,140 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:13:24] 2025-10-12 12:12:55,141 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:13:24] 2025-10-12 12:12:55,141 | INFO     | aborting loop
[2025-10-12 14:13:24] 2025-10-12 12:12:55,141 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 14:13:24] 2025-10-12 12:12:55,636 | INFO     | all payload control threads have been joined
[2025-10-12 14:13:24] 2025-10-12 12:12:55,884 | INFO     | all job control threads have been joined
[2025-10-12 14:13:24] 2025-10-12 12:12:55,996 | INFO     | all data control threads have been joined
[2025-10-12 14:13:24] 2025-10-12 12:12:56,146 | INFO     | [job] job monitor thread has finished
[2025-10-12 14:13:24] 2025-10-12 12:12:56,147 | INFO     | [job] retrieve thread has finished
[2025-10-12 14:13:24] 2025-10-12 12:12:56,147 | INFO     | [job] queue monitor thread has finished
[2025-10-12 14:13:24] 2025-10-12 12:12:56,237 | INFO     | [job] validate thread has finished
[2025-10-12 14:13:24] 2025-10-12 12:12:56,477 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 14:13:24] 2025-10-12 12:12:56,642 | INFO     | [payload] control thread has finished
[2025-10-12 14:13:24] 2025-10-12 12:12:56,705 | INFO     | [data] copytool_in thread has finished
[2025-10-12 14:13:24] 2025-10-12 12:12:56,738 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 14:13:24] 2025-10-12 12:12:56,798 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 14:13:24] 2025-10-12 12:12:56,814 | INFO     | [payload] failed_post thread has finished
[2025-10-12 14:13:24] 2025-10-12 12:12:56,890 | INFO     | [job] control thread has finished
[2025-10-12 14:13:24] 2025-10-12 12:12:57,002 | INFO     | [data] control thread has finished
[2025-10-12 14:13:24] 2025-10-12 12:12:57,147 | INFO     | [data] copytool_out thread has finished
[2025-10-12 14:13:24] 2025-10-12 12:12:57,246 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 14:13:24] 2025-10-12 12:12:57,356 | INFO     | [payload] validate_post thread has finished
[2025-10-12 14:13:24] 2025-10-12 12:13:01,253 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 14:13:24] 2025-10-12 12:13:02,557 | INFO     | [monitor] cgroup control has ended
[2025-10-12 14:13:24] 2025-10-12 12:13:05,292 | INFO     | job.realtimelogging is not enabled
[2025-10-12 14:13:24] 2025-10-12 12:13:06,298 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 14:13:24] 2025-10-12 12:13:06,855 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140545552516928)>', '<ExcThread(monitor, started 140544609085184)>']
[2025-10-12 14:13:24] 2025-10-12 12:13:11,858 | INFO     | all workflow threads have been joined
[2025-10-12 14:13:24] 2025-10-12 12:13:11,858 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 14:13:24] 2025-10-12 12:13:11,859 | INFO     | traces error code: 0
[2025-10-12 14:13:24] 2025-10-12 12:13:11,859 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 14:13:24] 2025-10-12 12:13:24,738 | INFO     | PID=1758544 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 14:13:24] 2025-10-12 12:13:24,738 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 14:13:24] 2025-10-12 12:13:24,738 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 14:13:24] 2025-10-12 12:13:24,738 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 14:13:24] 2025-10-12 12:13:24,738 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 14:13:24] 2025-10-12 12:13:24,738 | INFO     | [monitor] control thread has ended
[2025-10-12 14:13:24] 2025-10-12 12:13:24,779 [wrapper] ==== pilot stdout END ====
[2025-10-12 14:13:24] 2025-10-12 12:13:24,782 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 14:13:24] 2025-10-12 12:13:24,785 [wrapper] pilotpid: 1758544
[2025-10-12 14:13:24] 2025-10-12 12:13:24,787 [wrapper] Pilot exit status: 0
[2025-10-12 14:13:24] 2025-10-12 12:13:24,794 [wrapper] pandaids: 6838452307
[2025-10-12 14:13:24] 2025-10-12 12:13:24,807 [wrapper] cleanup supervisor_pilot 1779289 1758545
[2025-10-12 14:13:24] 2025-10-12 12:13:24,809 [wrapper] Test setup, not cleaning
[2025-10-12 14:13:24] 2025-10-12 12:13:24,811 [wrapper] apfmon messages muted
[2025-10-12 14:13:24] 2025-10-12 12:13:24,813 [wrapper] ==== wrapper stdout END ====
[2025-10-12 14:13:24] 2025-10-12 12:13:24,815 [wrapper] ==== wrapper stderr END ====
[2025-10-12 14:13:24]  *** Error codes and diagnostics ***
[2025-10-12 14:13:24]     "exeErrorCode": 0,
[2025-10-12 14:13:24]     "exeErrorDiag": "",
[2025-10-12 14:13:24]     "pilotErrorCode": 0,
[2025-10-12 14:13:24]     "pilotErrorDiag": "",
[2025-10-12 14:13:24]  *** Listing of results directory ***
[2025-10-12 14:13:24] total 412832
[2025-10-12 14:13:24] -rw-r--r-- 1 boinc boinc    557409 Oct 11 14:51 pilot3.tar.gz
[2025-10-12 14:13:24] -rw-r--r-- 1 boinc boinc      5112 Oct 11 15:33 queuedata.json
[2025-10-12 14:13:24] -rwx------ 1 boinc boinc     36292 Oct 11 15:33 runpilot2-wrapper.sh
[2025-10-12 14:13:24] -rw-r--r-- 1 boinc boinc       100 Oct 12 12:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 14:13:24] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 12:08 run_atlas
[2025-10-12 14:13:24] -rw-r--r-- 1 boinc boinc       105 Oct 12 12:08 job.xml
[2025-10-12 14:13:24] -rw-r--r-- 2 boinc boinc 221511831 Oct 12 12:08 EVNT.46676267._002339.pool.root.1
[2025-10-12 14:13:24] -rw-r--r-- 2 boinc boinc    569678 Oct 12 12:08 input.tar.gz
[2025-10-12 14:13:24] -rw-r--r-- 2 boinc boinc     15120 Oct 12 12:08 start_atlas.sh
[2025-10-12 14:13:24] drwxrwx--x 2 boinc boinc      4096 Oct 12 12:08 shared
[2025-10-12 14:13:24] -rw-r--r-- 1 boinc boinc         0 Oct 12 12:08 boinc_setup_complete
[2025-10-12 14:13:24] -rw-r--r-- 1 boinc boinc      6206 Oct 12 12:08 init_data.xml
[2025-10-12 14:13:24] -rw-r--r-- 1 boinc boinc         0 Oct 12 12:08 boinc_lockfile
[2025-10-12 14:13:24] -rw-r--r-- 1 boinc boinc      2550 Oct 12 12:08 pandaJob.out
[2025-10-12 14:13:24] -rw------- 1 boinc boinc    975536 Oct 12 12:08 agis_schedconf.cvmfs.json
[2025-10-12 14:13:24] -rw------- 1 boinc boinc   1560580 Oct 12 12:08 agis_ddmendpoints.agis.ALL.json
[2025-10-12 14:13:24] drwx------ 5 boinc boinc      4096 Oct 12 12:08 pilot3
[2025-10-12 14:13:24] -rw------- 1 boinc boinc 194636582 Oct 12 14:12 HITS.46676269._058335.pool.root.1
[2025-10-12 14:13:24] -rw-r--r-- 1 boinc boinc       529 Oct 12 14:12 boinc_task_state.xml
[2025-10-12 14:13:24] -rw------- 1 boinc boinc      1016 Oct 12 14:12 memory_monitor_summary.json
[2025-10-12 14:13:24] -rw------- 1 boinc boinc    276212 Oct 12 14:12 log.46676269._058335.job.log.tgz.1
[2025-10-12 14:13:24] -rw------- 1 boinc boinc      7764 Oct 12 14:12 heartbeat.json
[2025-10-12 14:13:24] -rw-r--r-- 1 boinc boinc      8192 Oct 12 14:13 boinc_mmap_file
[2025-10-12 14:13:24] -rw-r--r-- 1 boinc boinc        27 Oct 12 14:13 wrapper_checkpoint.txt
[2025-10-12 14:13:24] -rw------- 1 boinc boinc       747 Oct 12 14:13 pilotlog.txt
[2025-10-12 14:13:24] -rw------- 1 boinc boinc        95 Oct 12 14:13 pilot_heartbeat.json
[2025-10-12 14:13:24] -rw------- 1 boinc boinc   1072548 Oct 12 14:13 log.46676269._058335.job.log.1
[2025-10-12 14:13:24] -rw------- 1 boinc boinc       357 Oct 12 14:13 output.list
[2025-10-12 14:13:24] -rw-r--r-- 1 boinc boinc       620 Oct 12 14:13 runtime_log
[2025-10-12 14:13:24] -rw------- 1 boinc boinc   1372160 Oct 12 14:13 result.tar.gz
[2025-10-12 14:13:24] -rw------- 1 boinc boinc       662 Oct 12 14:13 yRfLDm3toR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmfxRMDmvfXyMo.diag
[2025-10-12 14:13:24] -rw-r--r-- 1 boinc boinc      8792 Oct 12 14:13 runtime_log.err
[2025-10-12 14:13:24] -rw-r--r-- 1 boinc boinc     11411 Oct 12 14:13 stderr.txt
[2025-10-12 14:13:24] HITS file was successfully produced:
[2025-10-12 14:13:24] -rw------- 1 boinc boinc 194636582 Oct 12 14:12 shared/HITS.pool.root.1
[2025-10-12 14:13:24]  *** Contents of shared directory: ***
[2025-10-12 14:13:24] total 408324
[2025-10-12 14:13:24] -rw-r--r-- 2 boinc boinc 221511831 Oct 12 12:08 ATLAS.root_0
[2025-10-12 14:13:24] -rw-r--r-- 2 boinc boinc    569678 Oct 12 12:08 input.tar.gz
[2025-10-12 14:13:24] -rw-r--r-- 2 boinc boinc     15120 Oct 12 12:08 start_atlas.sh
[2025-10-12 14:13:24] -rw------- 1 boinc boinc 194636582 Oct 12 14:12 HITS.pool.root.1
[2025-10-12 14:13:24] -rw------- 1 boinc boinc   1372160 Oct 12 14:13 result.tar.gz
14:13:26 (1754841): run_atlas exited; CPU time 14441.309520
14:13:26 (1754841): called boinc_finish(0)

</stderr_txt>
]]>

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