Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:40:44 (16918): wrapper (7.7.26015): starting
20:40:44 (16918): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 20:40:44] Arguments: --nthreads 8
[2025-10-11 20:40:44] Threads: 8
[2025-10-11 20:40:44] Checking for CVMFS
[2025-10-11 20:40:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 20:40:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 20:40:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 20:40:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 20:40:44] 2.11.2.0 3643 376 56832 151601 3 59 9697294 18432001 1833 130560 0 572271 99.996 10597 33115 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 20:40:44] CVMFS is ok
[2025-10-11 20:40:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 20:40:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 20:40:44] Further information can be found at the LHC@home message board.
[2025-10-11 20:40:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 20:40:44] Checking for apptainer binary...
[2025-10-11 20:40:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 20:40:44] Running /usr/bin/apptainer --version
[2025-10-11 20:40:44] apptainer version 1.3.2-1.el7
[2025-10-11 20:40:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 20:40:45] c-206-15.aglt2.org
[2025-10-11 20:40:45] apptainer works
[2025-10-11 20:40:45] Set ATHENA_PROC_NUMBER=8
[2025-10-11 20:40:45] Set ATHENA_CORE_NUMBER=8
[2025-10-11 20:40:45] Starting ATLAS job with PandaID=6838851324
[2025-10-11 20:40:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 23:41:20]  *** The last 200 lines of the pilot log: ***
[2025-10-11 23:41:20] 2025-10-12 03:40:35,307 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 23:41:20] 2025-10-12 03:40:35,308 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 23:41:20] 2025-10-12 03:40:35,310 | INFO     | fitting pss+swap vs Time
[2025-10-11 23:41:20] 2025-10-12 03:40:35,310 | INFO     | sum of square deviations: 1719429448.0
[2025-10-11 23:41:20] 2025-10-12 03:40:35,311 | INFO     | sum of deviations: 538622314.0
[2025-10-11 23:41:20] 2025-10-12 03:40:35,311 | INFO     | mean x: 1760235047.0
[2025-10-11 23:41:20] 2025-10-12 03:40:35,311 | INFO     | mean y: 2465240.3559322036
[2025-10-11 23:41:20] 2025-10-12 03:40:35,312 | INFO     | -- intersect: -548939689.5188286
[2025-10-11 23:41:20] 2025-10-12 03:40:35,312 | INFO     | intersect: -548939689.5188286
[2025-10-11 23:41:20] 2025-10-12 03:40:35,312 | INFO     | chi2: 1.9552823396615933
[2025-10-11 23:41:20] 2025-10-12 03:40:35,312 | INFO     | sum of square deviations: 1577789583.0
[2025-10-11 23:41:20] 2025-10-12 03:40:35,313 | INFO     | sum of deviations: 11952708196.0
[2025-10-11 23:41:20] 2025-10-12 03:40:35,313 | INFO     | mean x: 1760234894.5
[2025-10-11 23:41:20] 2025-10-12 03:40:35,313 | INFO     | mean y: 2477242.8139534886
[2025-10-11 23:41:20] 2025-10-12 03:40:35,313 | INFO     | -- intersect: -13332364282.99383
[2025-10-11 23:41:20] 2025-10-12 03:40:35,313 | INFO     | intersect: -13332364282.99383
[2025-10-11 23:41:20] 2025-10-12 03:40:35,314 | INFO     | chi2: 1.179724656178592
[2025-10-11 23:41:20] 2025-10-12 03:40:35,314 | INFO     | current chi2=1.179724656178592 (change=39.66474139060804 %)
[2025-10-11 23:41:20] 2025-10-12 03:40:35,314 | INFO     | sum of square deviations: 1444149868.0
[2025-10-11 23:41:20] 2025-10-12 03:40:35,315 | INFO     | sum of deviations: 11518092529.000004
[2025-10-11 23:41:20] 2025-10-12 03:40:35,315 | INFO     | mean x: 1760234742.0
[2025-10-11 23:41:20] 2025-10-12 03:40:35,315 | INFO     | mean y: 2476746.724550898
[2025-10-11 23:41:20] 2025-10-12 03:40:35,315 | INFO     | -- intersect: -14036610941.033663
[2025-10-11 23:41:20] 2025-10-12 03:40:35,315 | INFO     | intersect: -14036610941.033663
[2025-10-11 23:41:20] 2025-10-12 03:40:35,316 | INFO     | chi2: 1.180545846017778
[2025-10-11 23:41:20] 2025-10-12 03:40:35,316 | INFO     | current chi2=1.180545846017778 (change=-0.06960860187886028 %)
[2025-10-11 23:41:20] 2025-10-12 03:40:35,316 | INFO     | right removable region: 166
[2025-10-11 23:41:20] 2025-10-12 03:40:35,316 | INFO     | sum of square deviations: 1577789583.0
[2025-10-11 23:41:20] 2025-10-12 03:40:35,317 | INFO     | sum of deviations: -18356274299.5
[2025-10-11 23:41:20] 2025-10-12 03:40:35,317 | INFO     | mean x: 1760235199.5
[2025-10-11 23:41:20] 2025-10-12 03:40:35,317 | INFO     | mean y: 2485193.4360465114
[2025-10-11 23:41:20] 2025-10-12 03:40:35,317 | INFO     | -- intersect: 20481363050.02607
[2025-10-11 23:41:20] 2025-10-12 03:40:35,317 | INFO     | intersect: 20481363050.02607
[2025-10-11 23:41:20] 2025-10-12 03:40:35,318 | INFO     | chi2: 0.8129093268732023
[2025-10-11 23:41:20] 2025-10-12 03:40:35,318 | INFO     | current chi2=0.8129093268732023 (change=58.424964498278285 %)
[2025-10-11 23:41:20] 2025-10-12 03:40:35,318 | INFO     | sum of square deviations: 1444149868.0
[2025-10-11 23:41:20] 2025-10-12 03:40:35,319 | INFO     | sum of deviations: -17073967832.000004
[2025-10-11 23:41:20] 2025-10-12 03:40:35,319 | INFO     | mean x: 1760235352.0
[2025-10-11 23:41:20] 2025-10-12 03:40:35,319 | INFO     | mean y: 2483724.97005988
[2025-10-11 23:41:20] 2025-10-12 03:40:35,319 | INFO     | -- intersect: 20813482945.168167
[2025-10-11 23:41:20] 2025-10-12 03:40:35,319 | INFO     | intersect: 20813482945.168167
[2025-10-11 23:41:20] 2025-10-12 03:40:35,320 | INFO     | chi2: 0.813129835345447
[2025-10-11 23:41:20] 2025-10-12 03:40:35,320 | INFO     | current chi2=0.813129835345447 (change=-0.02712583863355604 %)
[2025-10-11 23:41:20] 2025-10-12 03:40:35,320 | INFO     | left removable region: 20
[2025-10-11 23:41:20] 2025-10-12 03:40:35,320 | INFO     | sum of square deviations: 964976232.5
[2025-10-11 23:41:20] 2025-10-12 03:40:35,321 | INFO     | sum of deviations: -2891439314.5000005
[2025-10-11 23:41:20] 2025-10-12 03:40:35,321 | INFO     | mean x: 1760235321.5
[2025-10-11 23:41:20] 2025-10-12 03:40:35,321 | INFO     | mean y: 2493075.678082192
[2025-10-11 23:41:20] 2025-10-12 03:40:35,321 | INFO     | -- intersect: 5276833976.459437
[2025-10-11 23:41:20] 2025-10-12 03:40:35,321 | INFO     | intersect: 5276833976.459437
[2025-10-11 23:41:20] 2025-10-12 03:40:35,321 | INFO     | chi2: 0.01314676282963506
[2025-10-11 23:41:20] 2025-10-12 03:40:35,321 | INFO     | -- intersect: 5276833976.459437
[2025-10-11 23:41:20] 2025-10-12 03:40:35,322 | INFO     | current memory leak: -3.00 B/s (using 146 data points, chi2=0.01)
[2025-10-11 23:41:20] 2025-10-12 03:40:35,322 | INFO     | could have reported an average CPU frequency of 2485 MHz (9 samples)
[2025-10-11 23:41:20] 2025-10-12 03:40:35,322 | INFO     | ..............................
[2025-10-11 23:41:20] 2025-10-12 03:40:35,322 | INFO     | . Timing measurements:
[2025-10-11 23:41:20] 2025-10-12 03:40:35,322 | INFO     | . get job = 0 s
[2025-10-11 23:41:20] 2025-10-12 03:40:35,322 | INFO     | . initial setup = 2 s
[2025-10-11 23:41:20] 2025-10-12 03:40:35,322 | INFO     | . payload setup = 4 s
[2025-10-11 23:41:20] 2025-10-12 03:40:35,322 | INFO     | . stage-in = 0 s
[2025-10-11 23:41:20] 2025-10-12 03:40:35,323 | INFO     | . payload execution = 10749 s
[2025-10-11 23:41:20] 2025-10-12 03:40:35,323 | INFO     | . stage-out = 0 s
[2025-10-11 23:41:20] 2025-10-12 03:40:35,323 | INFO     | . log creation = 0 s
[2025-10-11 23:41:20] 2025-10-12 03:40:35,323 | INFO     | ..............................
[2025-10-11 23:41:20] 2025-10-12 03:40:35,694 | INFO     | 
[2025-10-11 23:41:20] 2025-10-12 03:40:35,694 | INFO     | job summary report
[2025-10-11 23:41:20] 2025-10-12 03:40:35,695 | INFO     | --------------------------------------------------
[2025-10-11 23:41:20] 2025-10-12 03:40:35,695 | INFO     | PanDA job id: 6838851324
[2025-10-11 23:41:20] 2025-10-12 03:40:35,695 | INFO     | task id: 46676269
[2025-10-11 23:41:20] 2025-10-12 03:40:35,695 | INFO     | errors: (none)
[2025-10-11 23:41:20] 2025-10-12 03:40:35,695 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 23:41:20] 2025-10-12 03:40:35,695 | INFO     | pilot state: finished 
[2025-10-11 23:41:20] 2025-10-12 03:40:35,695 | INFO     | transexitcode: 0
[2025-10-11 23:41:20] 2025-10-12 03:40:35,695 | INFO     | exeerrorcode: 0
[2025-10-11 23:41:20] 2025-10-12 03:40:35,695 | INFO     | exeerrordiag: 
[2025-10-11 23:41:20] 2025-10-12 03:40:35,696 | INFO     | exitcode: 0
[2025-10-11 23:41:20] 2025-10-12 03:40:35,696 | INFO     | exitmsg: OK
[2025-10-11 23:41:20] 2025-10-12 03:40:35,696 | INFO     | cpuconsumptiontime: 81496 s
[2025-10-11 23:41:20] 2025-10-12 03:40:35,696 | INFO     | nevents: 400
[2025-10-11 23:41:20] 2025-10-12 03:40:35,696 | INFO     | neventsw: 0
[2025-10-11 23:41:20] 2025-10-12 03:40:35,696 | INFO     | pid: 27053
[2025-10-11 23:41:20] 2025-10-12 03:40:35,696 | INFO     | pgrp: 27053
[2025-10-11 23:41:20] 2025-10-12 03:40:35,696 | INFO     | corecount: 8
[2025-10-11 23:41:20] 2025-10-12 03:40:35,696 | INFO     | event service: False
[2025-10-11 23:41:20] 2025-10-12 03:40:35,697 | INFO     | sizes: {0: 2348630, 1: 2348885, 4: 2349147, 12: 2349175, 10757: 2378222, 10758: 2378221, 10759: 2387459, 10764: 2387661}
[2025-10-11 23:41:20] 2025-10-12 03:40:35,697 | INFO     | --------------------------------------------------
[2025-10-11 23:41:20] 2025-10-12 03:40:35,697 | INFO     | 
[2025-10-11 23:41:20] 2025-10-12 03:40:35,697 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 23:41:20] 2025-10-12 03:40:35,709 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 23:41:20] 2025-10-12 03:40:35,709 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 23:41:20] 2025-10-12 03:40:35,710 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 23:41:20] 2025-10-12 03:40:35,710 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 23:41:20] 2025-10-12 03:40:35,710 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 23:41:20] 2025-10-12 03:40:35,710 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 23:41:20] 2025-10-12 03:40:35,710 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 23:41:20] 2025-10-12 03:40:35,710 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 23:41:20] 2025-10-12 03:40:35,710 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 23:41:20] 2025-10-12 03:40:35,710 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 23:41:20] 2025-10-12 03:40:35,710 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 23:41:20] 2025-10-12 03:40:35,710 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 23:41:20] 2025-10-12 03:40:35,711 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 23:41:20] 2025-10-12 03:40:35,711 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 23:41:20] 2025-10-12 03:40:35,711 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 23:41:20] 2025-10-12 03:40:35,711 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 23:41:20] 2025-10-12 03:40:35,711 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 23:41:20] 2025-10-12 03:40:35,711 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 23:41:20] 2025-10-12 03:40:35,711 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 23:41:20] 2025-10-12 03:40:35,711 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 23:41:20] 2025-10-12 03:40:35,712 | INFO     | job 6838851324 has completed (purged errors)
[2025-10-11 23:41:20] 2025-10-12 03:40:35,712 | INFO     | overall cleanup function is called
[2025-10-11 23:41:20] 2025-10-12 03:40:36,719 | INFO     | --- collectZombieJob: --- 10, [27053]
[2025-10-11 23:41:20] 2025-10-12 03:40:36,719 | INFO     | zombie collector waiting for pid 27053
[2025-10-11 23:41:20] 2025-10-12 03:40:36,719 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 23:41:20] 2025-10-12 03:40:36,719 | INFO     | collected zombie processes
[2025-10-11 23:41:20] 2025-10-12 03:40:36,719 | INFO     | will attempt to kill all subprocesses of pid=27053
[2025-10-11 23:41:20] 2025-10-12 03:40:36,822 | INFO     | process IDs to be killed: [27053] (in reverse order)
[2025-10-11 23:41:20] 2025-10-12 03:40:36,859 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 23:41:20] 2025-10-12 03:40:36,859 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 23:41:20] 2025-10-12 03:40:36,862 | INFO     | did not find any defunct processes belonging to 27053
[2025-10-11 23:41:20] 2025-10-12 03:40:36,865 | INFO     | did not find any defunct processes belonging to 27053
[2025-10-11 23:41:20] 2025-10-12 03:40:36,865 | INFO     | ready for new job
[2025-10-11 23:41:20] 2025-10-12 03:40:36,865 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 23:41:20] 2025-10-12 03:40:36,866 | INFO     | ***************************************
[2025-10-11 23:41:20] 2025-10-12 03:40:36,866 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 23:41:20] 2025-10-12 03:40:36,866 | INFO     | ***************************************
[2025-10-11 23:41:20] 2025-10-12 03:40:36,867 | INFO     | 
[2025-10-11 23:41:20] 2025-10-12 03:40:36,867 | INFO     | architecture information:
[2025-10-11 23:41:20] 2025-10-12 03:40:36,868 | INFO     | executing command: cat /etc/os-release
[2025-10-11 23:41:20] 2025-10-12 03:40:36,880 | INFO     | cat /etc/os-release:
[2025-10-11 23:41:20] NAME="CentOS Linux"
[2025-10-11 23:41:20] VERSION="7 (Core)"
[2025-10-11 23:41:20] ID="centos"
[2025-10-11 23:41:20] ID_LIKE="rhel fedora"
[2025-10-11 23:41:20] VERSION_ID="7"
[2025-10-11 23:41:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 23:41:20] ANSI_COLOR="0;31"
[2025-10-11 23:41:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 23:41:20] HOME_URL="https://www.centos.org/"
[2025-10-11 23:41:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 23:41:20] 
[2025-10-11 23:41:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 23:41:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 23:41:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 23:41:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 23:41:20] 
[2025-10-11 23:41:20] 2025-10-12 03:40:36,880 | INFO     | ***************************************
[2025-10-11 23:41:20] 2025-10-12 03:40:37,383 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 23:41:20] 2025-10-12 03:40:37,395 | INFO     | sufficient remaining disk space (27915190272 B)
[2025-10-11 23:41:20] 2025-10-12 03:40:37,395 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 23:41:20] 2025-10-12 03:40:37,396 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 23:41:20] 2025-10-12 03:40:37,396 | INFO     | update_server=False
[2025-10-11 23:41:20] 2025-10-12 03:40:37,396 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 23:41:20] 2025-10-12 03:40:37,396 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:41:20] 2025-10-12 03:40:37,397 | INFO     | all payload control threads have been joined
[2025-10-11 23:41:20] 2025-10-12 03:40:37,578 | INFO     | all job control threads have been joined
[2025-10-11 23:41:20] 2025-10-12 03:40:37,788 | INFO     | all data control threads have been joined
[2025-10-11 23:41:20] 2025-10-12 03:40:37,827 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:41:20] 2025-10-12 03:40:37,827 | INFO     | aborting loop
[2025-10-11 23:41:20] 2025-10-12 03:40:37,903 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 23:41:20] 2025-10-12 03:40:38,401 | INFO     | [job] retrieve thread has finished
[2025-10-11 23:41:20] 2025-10-12 03:40:38,402 | INFO     | [job] queue monitor thread has finished
[2025-10-11 23:41:20] 2025-10-12 03:40:38,402 | INFO     | [payload] control thread has finished
[2025-10-11 23:41:20] 2025-10-12 03:40:38,581 | INFO     | [job] control thread has finished
[2025-10-11 23:41:20] 2025-10-12 03:40:38,607 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 23:41:20] 2025-10-12 03:40:38,793 | INFO     | [data] control thread has finished
[2025-10-11 23:41:20] 2025-10-12 03:40:38,832 | INFO     | [job] job monitor thread has finished
[2025-10-11 23:41:20] 2025-10-12 03:40:38,969 | INFO     | [payload] failed_post thread has finished
[2025-10-11 23:41:20] 2025-10-12 03:40:39,203 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 23:41:20] 2025-10-12 03:40:39,204 | INFO     | [data] copytool_in thread has finished
[2025-10-11 23:41:20] 2025-10-12 03:40:39,344 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 23:41:20] 2025-10-12 03:40:39,540 | INFO     | [payload] validate_post thread has finished
[2025-10-11 23:41:20] 2025-10-12 03:40:39,752 | INFO     | [job] validate thread has finished
[2025-10-11 23:41:20] 2025-10-12 03:40:39,799 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 23:41:20] 2025-10-12 03:40:39,908 | INFO     | [data] copytool_out thread has finished
[2025-10-11 23:41:20] 2025-10-12 03:40:40,473 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 23:41:20] 2025-10-12 03:40:44,479 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 23:41:20] 2025-10-12 03:40:54,056 [wrapper] supervise_pilot (15 min periods counter: 13)
[2025-10-11 23:41:20] 2025-10-12 03:41:08,386 | INFO     | PID=20604 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 23:41:20] 2025-10-12 03:41:08,386 | INFO     | .. there are 3 such processes running
[2025-10-11 23:41:20] 2025-10-12 03:41:08,387 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 23:41:20] 2025-10-12 03:41:08,387 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 23:41:20] 2025-10-12 03:41:08,387 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 23:41:20] 2025-10-12 03:41:13,442 | INFO     | [monitor] cgroup control has ended
[2025-10-11 23:41:20] 2025-10-12 03:41:15,485 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140567944390464)>', '<ExcThread(monitor, started 140567224772352)>']
[2025-10-11 23:41:20] 2025-10-12 03:41:16,419 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 23:41:20] 2025-10-12 03:41:16,419 | INFO     | [monitor] control thread has ended
[2025-10-11 23:41:20] 2025-10-12 03:41:20,508 | INFO     | all workflow threads have been joined
[2025-10-11 23:41:20] 2025-10-12 03:41:20,508 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 23:41:20] 2025-10-12 03:41:20,508 | INFO     | traces error code: 0
[2025-10-11 23:41:20] 2025-10-12 03:41:20,508 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 23:41:20] 2025-10-12 03:41:20,605 [wrapper] ==== pilot stdout END ====
[2025-10-11 23:41:20] 2025-10-12 03:41:20,608 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 23:41:20] 2025-10-12 03:41:20,610 [wrapper] pilotpid: 20604
[2025-10-11 23:41:20] 2025-10-12 03:41:20,612 [wrapper] Pilot exit status: 0
[2025-10-11 23:41:20] 2025-10-12 03:41:20,622 [wrapper] pandaids: 6838851324
[2025-10-11 23:41:20] 2025-10-12 03:41:20,649 [wrapper] cleanup supervisor_pilot  6719 20605
[2025-10-11 23:41:20] 2025-10-12 03:41:20,652 [wrapper] Test setup, not cleaning
[2025-10-11 23:41:20] 2025-10-12 03:41:20,654 [wrapper] apfmon messages muted
[2025-10-11 23:41:20] 2025-10-12 03:41:20,656 [wrapper] ==== wrapper stdout END ====
[2025-10-11 23:41:20] 2025-10-12 03:41:20,658 [wrapper] ==== wrapper stderr END ====
[2025-10-11 23:41:20]  *** Error codes and diagnostics ***
[2025-10-11 23:41:20]     "exeErrorCode": 0,
[2025-10-11 23:41:20]     "exeErrorDiag": "",
[2025-10-11 23:41:20]     "pilotErrorCode": 0,
[2025-10-11 23:41:20]     "pilotErrorDiag": "",
[2025-10-11 23:41:20]  *** Listing of results directory ***
[2025-10-11 23:41:20] total 411772
[2025-10-11 23:41:20] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 15:02 pilot3.tar.gz
[2025-10-11 23:41:20] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 15:37 queuedata.json
[2025-10-11 23:41:20] -rwx------ 1 boincer umatlas     36292 Oct 11 15:37 runpilot2-wrapper.sh
[2025-10-11 23:41:20] -rw-r--r-- 1 boincer umatlas       100 Oct 11 20:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 23:41:20] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 20:40 run_atlas
[2025-10-11 23:41:20] -rw-r--r-- 1 boincer umatlas       105 Oct 11 20:40 job.xml
[2025-10-11 23:41:20] -rw-r--r-- 2 boincer umatlas 220078164 Oct 11 20:40 EVNT.46676267._002556.pool.root.1
[2025-10-11 23:41:20] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 20:40 start_atlas.sh
[2025-10-11 23:41:20] drwxrwx--x 2 boincer umatlas      4096 Oct 11 20:40 shared
[2025-10-11 23:41:20] -rw-r--r-- 2 boincer umatlas    569678 Oct 11 20:40 input.tar.gz
[2025-10-11 23:41:20] -rw-r--r-- 1 boincer umatlas         0 Oct 11 20:40 boinc_lockfile
[2025-10-11 23:41:20] -rw-r--r-- 1 boincer umatlas      2550 Oct 11 20:40 pandaJob.out
[2025-10-11 23:41:20] -rw------- 1 boincer umatlas    975496 Oct 11 20:40 agis_schedconf.cvmfs.json
[2025-10-11 23:41:20] -rw------- 1 boincer umatlas   1560580 Oct 11 20:40 agis_ddmendpoints.agis.ALL.json
[2025-10-11 23:41:20] drwx------ 5 boincer umatlas      4096 Oct 11 20:40 pilot3
[2025-10-11 23:41:20] -rw-r--r-- 1 boincer umatlas      5951 Oct 11 23:37 init_data.xml
[2025-10-11 23:41:20] -rw------- 1 boincer umatlas 193798937 Oct 11 23:39 HITS.46676269._063626.pool.root.1
[2025-10-11 23:41:20] -rw------- 1 boincer umatlas      1054 Oct 11 23:40 memory_monitor_summary.json
[2025-10-11 23:41:20] -rw-r--r-- 1 boincer umatlas       530 Oct 11 23:40 boinc_task_state.xml
[2025-10-11 23:41:20] -rw------- 1 boincer umatlas    424253 Oct 11 23:40 log.46676269._063626.job.log.tgz.1
[2025-10-11 23:41:20] -rw------- 1 boincer umatlas      7860 Oct 11 23:40 heartbeat.json
[2025-10-11 23:41:20] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 23:41 boinc_mmap_file
[2025-10-11 23:41:20] -rw-r--r-- 1 boincer umatlas        28 Oct 11 23:41 wrapper_checkpoint.txt
[2025-10-11 23:41:20] -rw------- 1 boincer umatlas        95 Oct 11 23:41 pilot_heartbeat.json
[2025-10-11 23:41:20] -rw------- 1 boincer umatlas      4821 Oct 11 23:41 pilotlog.txt
[2025-10-11 23:41:20] -rw------- 1 boincer umatlas   1507918 Oct 11 23:41 log.46676269._063626.job.log.1
[2025-10-11 23:41:20] -rw------- 1 boincer umatlas       357 Oct 11 23:41 output.list
[2025-10-11 23:41:20] -rw-r--r-- 1 boincer umatlas       620 Oct 11 23:41 runtime_log
[2025-10-11 23:41:20] -rw------- 1 boincer umatlas   1955840 Oct 11 23:41 result.tar.gz
[2025-10-11 23:41:20] -rw-r--r-- 1 boincer umatlas      8704 Oct 11 23:41 runtime_log.err
[2025-10-11 23:41:20] -rw------- 1 boincer umatlas       662 Oct 11 23:41 dRSKDmrauR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmKSSMDmLr6Fan.diag
[2025-10-11 23:41:20] -rw-r--r-- 1 boincer umatlas     20861 Oct 11 23:41 stderr.txt
[2025-10-11 23:41:20] HITS file was successfully produced:
[2025-10-11 23:41:20] -rw------- 1 boincer umatlas 193798937 Oct 11 23:39 shared/HITS.pool.root.1
[2025-10-11 23:41:20]  *** Contents of shared directory: ***
[2025-10-11 23:41:20] total 406676
[2025-10-11 23:41:20] -rw-r--r-- 2 boincer umatlas 220078164 Oct 11 20:40 ATLAS.root_0
[2025-10-11 23:41:20] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 20:40 start_atlas.sh
[2025-10-11 23:41:20] -rw-r--r-- 2 boincer umatlas    569678 Oct 11 20:40 input.tar.gz
[2025-10-11 23:41:20] -rw------- 1 boincer umatlas 193798937 Oct 11 23:39 HITS.pool.root.1
[2025-10-11 23:41:20] -rw------- 1 boincer umatlas   1955840 Oct 11 23:41 result.tar.gz
23:41:21 (16918): run_atlas exited; CPU time 81605.347896
23:41:21 (16918): called boinc_finish(0)

</stderr_txt>
]]>

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