Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-12 04:45:09 (3580): vboxwrapper version 26210
2025-10-12 04:45:09 (3580): BOINC client version: 8.2.4
2025-10-12 04:45:10 (3580): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-10-12 04:45:10 (3580): Successfully copied 'init_data.xml' to the shared directory.
2025-10-12 04:45:10 (3580): Create VM. (boinc_dcf0a999e3df221c, slot#0)
2025-10-12 04:45:11 (3580): Setting Memory Size for VM. (4600MB)
2025-10-12 04:45:11 (3580): Setting CPU Count for VM. (6)
2025-10-12 04:45:11 (3580): Setting Chipset Options for VM.
2025-10-12 04:45:11 (3580): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-12 04:45:12 (3580): Setting Boot Options for VM.
2025-10-12 04:45:12 (3580): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-12 04:45:12 (3580): Enabling VM Network Access.
2025-10-12 04:45:13 (3580): Disabling USB Support for VM.
2025-10-12 04:45:13 (3580): Disabling COM Port Support for VM.
2025-10-12 04:45:13 (3580): Disabling LPT Port Support for VM.
2025-10-12 04:45:13 (3580): Disabling Audio Support for VM.
2025-10-12 04:45:14 (3580): Disabling Clipboard Support for VM.
2025-10-12 04:45:14 (3580): Disabling Drag and Drop Support for VM.
2025-10-12 04:45:14 (3580): Adding storage controller(s) to VM.
2025-10-12 04:45:14 (3580): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-12 04:45:15 (3580): Adding VirtualBox Guest Additions to VM.
2025-10-12 04:45:15 (3580): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-12 04:45:15 (3580): forwarding host port 27881 to guest port 80
2025-10-12 04:45:16 (3580): Enabling remote desktop for VM.
2025-10-12 04:45:16 (3580): Enabling shared directory for VM.
2025-10-12 04:45:17 (3580): Starting VM using VBoxManage interface. (boinc_dcf0a999e3df221c, slot#0)
2025-10-12 04:45:21 (3580): Successfully started VM. (PID = '7668')
2025-10-12 04:45:21 (3580): Reporting VM Process ID to BOINC.
2025-10-12 04:45:21 (3580): Guest Log: BIOS: VirtualBox 7.2.2
2025-10-12 04:45:21 (3580): Guest Log: CPUID EDX: 0x178bfbff
2025-10-12 04:45:21 (3580): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-12 04:45:21 (3580): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-12 04:45:21 (3580): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-12 04:45:21 (3580): Detected: Web Application Enabled (http://localhost:27881)
2025-10-12 04:45:21 (3580): Detected: Remote Desktop Enabled (localhost:27882)
2025-10-12 04:45:21 (3580): Preference change detected
2025-10-12 04:45:21 (3580): Setting CPU throttle for VM. (98%)
2025-10-12 04:45:21 (3580): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-12 04:45:23 (3580): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-12 04:45:23 (3580): Guest Log: BIOS: Booting from Hard Disk...
2025-10-12 04:45:25 (3580): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-12 04:45:25 (3580): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-12 04:45:25 (3580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-12 04:45:32 (3580): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-12 04:45:32 (3580): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-12 04:45:35 (3580): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-12 04:45:35 (3580): Guest Log: 00:00:00.000052 main     Log opened 2025-10-12T04:45:34.594502000Z
2025-10-12 04:45:35 (3580): Guest Log: 00:00:00.000153 main     OS Product: Linux
2025-10-12 04:45:35 (3580): Guest Log: 00:00:00.000166 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-12 04:45:35 (3580): Guest Log: 00:00:00.000176 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-12 04:45:35 (3580): Guest Log: 00:00:00.000186 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-12 04:45:35 (3580): Guest Log: 00:00:00.000186 main     Process ID: 1339
2025-10-12 04:45:35 (3580): Guest Log: 00:00:00.000186 main     Package type: LINUX_64BITS_GENERIC
2025-10-12 04:45:35 (3580): Guest Log: 00:00:00.000609 main     5.2.32 r132073 started. Verbose level = 0
2025-10-12 04:45:35 (3580): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-12 04:45:35 (3580): Guest Log: [INFO] Mounting shared directory
2025-10-12 04:45:35 (3580): Guest Log: [INFO] Checking for init_data.xml
2025-10-12 04:45:40 (3580): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-12 04:45:40 (3580): Guest Log: [INFO] Detected branch: prod
2025-10-12 04:45:40 (3580): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-12 04:45:40 (3580): Guest Log: Copying input files
2025-10-12 04:45:41 (3580): Guest Log: Copied input files into RunAtlas.
2025-10-12 04:45:41 (3580): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-12 04:45:41 (3580): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-12 04:45:41 (3580): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-12 04:45:41 (3580): Guest Log: Further information can be found at the LHC@home message board.
2025-10-12 04:45:44 (3580): Guest Log: 00:00:10.024393 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 189 617 460 000ns (GuestNow=1 760 237 144 978 174 000 ns GuestLast=1 760 244 334 595 634 000 ns fSetTimeLastLoop=true )
2025-10-12 04:45:48 (3580): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-12 04:45:48 (3580): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-12 04:45:48 (3580): Guest Log: 2.6.3.0 1616 0 30196 151604 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-12 04:45:49 (3580): Guest Log: copied the webapp to /var/www
2025-10-12 04:45:49 (3580): Guest Log: ATHENA_PROC_NUMBER=6
2025-10-12 04:45:49 (3580): Guest Log: ATHENA_CORE_NUMBER=6
2025-10-12 04:45:49 (3580): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-12 04:45:49 (3580): Guest Log:  *** Starting ATLAS job. (PandaID=6838633942 taskID=46676269) ***
2025-10-12 05:23:56 (3580): Guest Log:  *** Job finished ***
2025-10-12 05:23:56 (3580): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-12 05:23:56 (3580): Guest Log: 2025-10-12 03:27:15,893 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-12 05:23:56 (3580): Guest Log: 2025-10-12 03:27:15,893 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-12 05:23:56 (3580): Guest Log: 2025-10-12 03:27:23,432 | INFO     | [monitor] cgroup control has ended
2025-10-12 05:23:56 (3580): Guest Log: 2025-10-12 03:27:25,624 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139990629791552)>', '<ExcThread(monitor, started 139989736212224)>']
2025-10-12 05:23:56 (3580): Guest Log: 2025-10-12 03:27:26,510 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-12 05:23:56 (3580): Guest Log: 2025-10-12 03:27:26,510 | INFO     | [monitor] control thread has ended
2025-10-12 05:23:56 (3580): Guest Log: 2025-10-12 03:27:30,633 | INFO     | all workflow threads have been joined
2025-10-12 05:23:56 (3580): Guest Log: 2025-10-12 03:27:30,633 | INFO     | end of generic workflow (traces error code: 0)
2025-10-12 05:23:56 (3580): Guest Log: 2025-10-12 03:27:30,633 | INFO     | traces error code: 0
2025-10-12 05:23:56 (3580): Guest Log: 2025-10-12 03:27:30,633 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-12 05:23:56 (3580): Guest Log: 2025-10-12 03:27:30,666 [wrapper] ==== pilot stdout END ====
2025-10-12 05:23:56 (3580): Guest Log: 2025-10-12 03:27:30,668 [wrapper] ==== wrapper stdout RESUME ====
2025-10-12 05:23:56 (3580): Guest Log: 2025-10-12 03:27:30,670 [wrapper] pilotpid: 6026
2025-10-12 05:23:56 (3580): Guest Log: 2025-10-12 03:27:30,673 [wrapper] Pilot exit status: 0
2025-10-12 05:23:56 (3580): Guest Log: 2025-10-12 03:27:30,749 [wrapper] pandaids: 6838633942
2025-10-12 05:23:56 (3580): Guest Log: 2025-10-12 03:27:30,763 [wrapper] cleanup supervisor_pilot 19256 6027
2025-10-12 05:23:56 (3580): Guest Log: 2025-10-12 03:27:30,765 [wrapper] Test setup, not cleaning
2025-10-12 05:23:56 (3580): Guest Log: 2025-10-12 03:27:30,767 [wrapper] apfmon messages muted
2025-10-12 05:23:56 (3580): Guest Log: 2025-10-12 03:27:30,769 [wrapper] ==== wrapper stdout END ====
2025-10-12 05:23:56 (3580): Guest Log: 2025-10-12 03:27:30,771 [wrapper] ==== wrapper stderr END ====
2025-10-12 05:23:56 (3580): Guest Log:  *** Error codes and diagnostics ***
2025-10-12 05:23:56 (3580): Guest Log:     "exeErrorCode": 0,
2025-10-12 05:23:56 (3580): Guest Log:     "exeErrorDiag": "",
2025-10-12 05:23:56 (3580): Guest Log:     "pilotErrorCode": 0,
2025-10-12 05:23:56 (3580): Guest Log:     "pilotErrorDiag": "",
2025-10-12 05:23:56 (3580): Guest Log:  *** Listing of results directory ***
2025-10-12 05:23:56 (3580): Guest Log: total 190588
2025-10-12 05:23:56 (3580): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 11 16:20 pilot3.tar.gz
2025-10-12 05:23:56 (3580): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 11 17:05 queuedata.json
2025-10-12 05:23:56 (3580): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 11 17:06 runpilot2-wrapper.sh
2025-10-12 05:23:56 (3580): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 12 02:45 start_atlas.sh
2025-10-12 05:23:56 (3580): Guest Log: -rwxr-xr-x. 1 atlas atlas    569681 Oct 12 02:45 input.tar.gz
2025-10-12 05:23:56 (3580): Guest Log: -rwxr-xr-x. 1 atlas atlas      8953 Oct 12 02:45 init_data.xml
2025-10-12 05:23:56 (3580): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 12 02:45 EVNT.46676267._002468.pool.root.1 -> /data/./ATLAS.root_0
2025-10-12 05:23:56 (3580): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Oct 12 02:45 pandaJob.out
2025-10-12 05:23:56 (3580): Guest Log: -rw-------. 1 atlas atlas    975496 Oct 12 02:46 agis_schedconf.cvmfs.json
2025-10-12 05:23:56 (3580): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 12 02:46 agis_ddmendpoints.agis.ALL.json
2025-10-12 05:23:56 (3580): Guest Log: drwx------. 5 atlas atlas      4096 Oct 12 02:46 pilot3
2025-10-12 05:23:56 (3580): Guest Log: -rw-------. 1 atlas atlas 190058858 Oct 12 03:25 HITS.46676269._061462.pool.root.1
2025-10-12 05:23:56 (3580): Guest Log: -rw-------. 1 atlas atlas      1028 Oct 12 03:26 memory_monitor_summary.json
2025-10-12 05:23:56 (3580): Guest Log: -rw-------. 1 atlas atlas    265018 Oct 12 03:26 log.46676269._061462.job.log.tgz.1
2025-10-12 05:23:56 (3580): Guest Log: -rw-------. 1 atlas atlas        95 Oct 12 03:26 pilot_heartbeat.json
2025-10-12 05:23:56 (3580): Guest Log: -rw-------. 1 atlas atlas      7794 Oct 12 03:26 heartbeat.json
2025-10-12 05:23:56 (3580): Guest Log: -rw-------. 1 atlas atlas      5063 Oct 12 03:27 pilotlog.txt
2025-10-12 05:23:56 (3580): Guest Log: -rw-------. 1 atlas atlas    367446 Oct 12 03:27 log.46676269._061462.job.log.1
2025-10-12 05:23:56 (3580): Guest Log: -rw-------. 1 atlas atlas       357 Oct 12 03:27 output.list
2025-10-12 05:23:56 (3580): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 12 03:27 runtime_log
2025-10-12 05:23:56 (3580): Guest Log: -rw-------. 1 atlas atlas    655360 Oct 12 03:27 result.tar.gz
2025-10-12 05:23:56 (3580): Guest Log: -rw-r--r--. 1 atlas atlas      8630 Oct 12 03:27 runtime_log.err
2025-10-12 05:23:56 (3580): Guest Log: -rw-------. 1 atlas atlas       649 Oct 12 03:27 lENLDmCEsR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmj1gNDmbsYlOo.diag
2025-10-12 05:23:56 (3580): Guest Log: Looking for outputfile HITS.46676269._061462.pool.root.1
2025-10-12 05:23:56 (3580): Guest Log: HITS file was successfully produced
2025-10-12 05:23:56 (3580): Guest Log: -rw-------. 1 atlas atlas 190058858 Oct 12 03:25 /home/atlas/RunAtlas/HITS.46676269._061462.pool.root.1
2025-10-12 05:23:56 (3580): Guest Log: Successfully finished the ATLAS job!
2025-10-12 05:23:56 (3580): Guest Log: Copying the results back to the shared directory!
2025-10-12 05:23:56 (3580): Guest Log:  *** Contents of shared directory: ***
2025-10-12 05:23:56 (3580): Guest Log: total 402784
2025-10-12 05:23:56 (3580): Guest Log: -rwxrwxrwx. 1 root root 221128757 Oct 12 02:45 ATLAS.root_0
2025-10-12 05:23:56 (3580): Guest Log: -rwxrwxrwx. 1 root root 190058858 Oct 12 03:23 HITS.pool.root.1
2025-10-12 05:23:56 (3580): Guest Log: -rwxrwxrwx. 1 root root      8953 Oct 12 02:45 init_data.xml
2025-10-12 05:23:56 (3580): Guest Log: -rwxrwxrwx. 1 root root    569681 Oct 12 00:43 input.tar.gz
2025-10-12 05:23:56 (3580): Guest Log: -rwxrwxrwx. 1 root root    655360 Oct 12 03:23 result.tar.gz
2025-10-12 05:23:56 (3580): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 12 00:43 start_atlas.sh
2025-10-12 05:23:56 (3580): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-12 05:23:56 (3580): VM Completion File Detected.
2025-10-12 05:23:56 (3580): Powering off VM.
2025-10-12 05:23:56 (3580): Successfully stopped VM.
2025-10-12 05:23:56 (3580): Deregistering VM. (boinc_dcf0a999e3df221c, slot#0)
2025-10-12 05:23:56 (3580): Removing network bandwidth throttle group from VM.
2025-10-12 05:23:56 (3580): Removing VM from VirtualBox.
2025-10-12 05:24:02 (3580): called boinc_finish(0)

</stderr_txt>
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