Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:20:10 (6936): wrapper (7.7.26015): starting
20:20:10 (6936): wrapper: running run_atlas (--nthreads 4)
[2025-10-11 20:20:10] Arguments: --nthreads 4
[2025-10-11 20:20:10] Threads: 4
[2025-10-11 20:20:10] Checking for CVMFS
[2025-10-11 20:20:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 20:20:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 20:20:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 20:20:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 20:20:11] 2.11.2.0 2311 41915 66604 151601 1 56 19589296 20275200 1 130560 0 21836938 99.989 1356780 55816 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 20:20:11] CVMFS is ok
[2025-10-11 20:20:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 20:20:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 20:20:11] Further information can be found at the LHC@home message board.
[2025-10-11 20:20:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 20:20:11] Checking for apptainer binary...
[2025-10-11 20:20:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 20:20:11] Running /usr/bin/apptainer --version
[2025-10-11 20:20:11] apptainer version 1.3.2-1.el7
[2025-10-11 20:20:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 20:20:11] c-205-34.aglt2.org
[2025-10-11 20:20:11] apptainer works
[2025-10-11 20:20:11] Set ATHENA_PROC_NUMBER=4
[2025-10-11 20:20:11] Set ATHENA_CORE_NUMBER=4
[2025-10-11 20:20:11] Starting ATLAS job with PandaID=6838850607
[2025-10-11 20:20:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 21:53:34]  *** The last 200 lines of the pilot log: ***
[2025-10-11 21:53:34]  mtime=0
[2025-10-11 21:53:34]  protocol_id=None
[2025-10-11 21:53:34]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-11 21:53:34]  replicas=None
[2025-10-11 21:53:34]  scope=mc23_13p6TeV
[2025-10-11 21:53:34]  status=None
[2025-10-11 21:53:34]  status_code=0
[2025-10-11 21:53:34]  storage_token=
[2025-10-11 21:53:34]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6838850607/log.46676269._063283.job.log.tgz.1
[2025-10-11 21:53:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/82/be/log.46676269._063283.job.log.tgz.1
[2025-10-11 21:53:34]  workdir=None
[2025-10-11 21:53:34] ]
[2025-10-11 21:53:34] 2025-10-12 01:52:48,399 | INFO     | transferring file log.46676269._063283.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6838850607/log.46676269._063283.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 21:53:34] 2025-10-12 01:52:48,399 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6838850607/log.46676269._063283.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._063283.job
[2025-10-11 21:53:34] 2025-10-12 01:52:48,409 | INFO     | adding to output.list: log.46676269._063283.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/82/be/log.46676269._063283.job.log.tg
[2025-10-11 21:53:34] 2025-10-12 01:52:48,410 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 21:53:34] 2025-10-12 01:52:48,410 | INFO     | summary of transferred files:
[2025-10-11 21:53:34] 2025-10-12 01:52:48,410 | INFO     |  -- lfn=log.46676269._063283.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 21:53:34] 2025-10-12 01:52:48,410 | INFO     | stage-out finished correctly
[2025-10-11 21:53:34] 2025-10-12 01:52:49,774 | INFO     | monitor loop #422: job 0:6838850607 is in state 'finished'
[2025-10-11 21:53:34] 2025-10-12 01:52:49,774 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 21:53:34] 2025-10-12 01:52:50,053 | INFO     | time since job start (5550s) is within the limit (172800.0s)
[2025-10-11 21:53:34] 2025-10-12 01:52:51,220 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 21:53:34] 2025-10-12 01:52:51,638 | INFO     | job 6838850607 has state=finished
[2025-10-11 21:53:34] 2025-10-12 01:52:51,638 | INFO     | preparing for final server update for job 6838850607 in state='finished'
[2025-10-11 21:53:34] 2025-10-12 01:52:51,701 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-11 21:53:34] 2025-10-12 01:52:51,702 | INFO     | this job has now completed (state=finished)
[2025-10-11 21:53:34] 2025-10-12 01:52:51,702 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 21:53:34] 2025-10-12 01:52:51,702 | INFO     | log transfer has been attempted: DONE
[2025-10-11 21:53:34] 2025-10-12 01:52:51,702 | INFO     | job 6838850607 has finished - writing final server update
[2025-10-11 21:53:34] 2025-10-12 01:52:51,703 | INFO     | total number of processed events: 400 (read)
[2025-10-11 21:53:34] 2025-10-12 01:52:51,703 | INFO     | executing command: lscpu
[2025-10-11 21:53:34] 2025-10-12 01:52:51,728 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 21:53:34] 2025-10-12 01:52:52,056 | INFO     | time since job start (5552s) is within the limit (172800.0s)
[2025-10-11 21:53:34] 2025-10-12 01:52:52,277 | INFO     | monitor loop #423: job 0:6838850607 is in state 'finished'
[2025-10-11 21:53:34] 2025-10-12 01:52:52,277 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 21:53:34] 2025-10-12 01:52:54,085 | INFO     | time since job start (5554s) is within the limit (172800.0s)
[2025-10-11 21:53:34] 2025-10-12 01:52:54,594 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 21:53:34] 2025-10-12 01:52:54,595 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 2462.26475
[2025-10-11 21:53:34] 2025-10-12 01:52:54,596 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838850607/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 21:53:34] 2025-10-12 01:52:54,597 | INFO     | extracted standard info from prmon json
[2025-10-11 21:53:34] 2025-10-12 01:52:54,597 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 21:53:34] 2025-10-12 01:52:54,597 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 21:53:34] 2025-10-12 01:52:54,597 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 21:53:34] 2025-10-12 01:52:54,597 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 21:53:34] 2025-10-12 01:52:54,598 | INFO     | fitting pss+swap vs Time
[2025-10-11 21:53:34] 2025-10-12 01:52:54,598 | INFO     | sum of square deviations: 183761585.0
[2025-10-11 21:53:34] 2025-10-12 01:52:54,599 | INFO     | sum of deviations: -13727179530.0
[2025-10-11 21:53:34] 2025-10-12 01:52:54,599 | INFO     | mean x: 1760231279.5
[2025-10-11 21:53:34] 2025-10-12 01:52:54,599 | INFO     | mean y: 2531010.8571428573
[2025-10-11 21:53:34] 2025-10-12 01:52:54,599 | INFO     | -- intersect: 131493619249.01152
[2025-10-11 21:53:34] 2025-10-12 01:52:54,599 | INFO     | intersect: 131493619249.01152
[2025-10-11 21:53:34] 2025-10-12 01:52:54,599 | INFO     | chi2: 0.0922731741406101
[2025-10-11 21:53:34] 2025-10-12 01:52:54,599 | INFO     | -- intersect: 131493619249.01152
[2025-10-11 21:53:34] 2025-10-12 01:52:54,599 | INFO     | current memory leak: -74.70 B/s (using 84 data points, chi2=0.09)
[2025-10-11 21:53:34] 2025-10-12 01:52:54,599 | INFO     | could have reported an average CPU frequency of 2979 MHz (7 samples)
[2025-10-11 21:53:34] 2025-10-12 01:52:54,599 | INFO     | ..............................
[2025-10-11 21:53:34] 2025-10-12 01:52:54,599 | INFO     | . Timing measurements:
[2025-10-11 21:53:34] 2025-10-12 01:52:54,600 | INFO     | . get job = 0 s
[2025-10-11 21:53:34] 2025-10-12 01:52:54,600 | INFO     | . initial setup = 2 s
[2025-10-11 21:53:34] 2025-10-12 01:52:54,600 | INFO     | . payload setup = 4 s
[2025-10-11 21:53:34] 2025-10-12 01:52:54,600 | INFO     | . stage-in = 0 s
[2025-10-11 21:53:34] 2025-10-12 01:52:54,600 | INFO     | . payload execution = 5525 s
[2025-10-11 21:53:34] 2025-10-12 01:52:54,600 | INFO     | . stage-out = 0 s
[2025-10-11 21:53:34] 2025-10-12 01:52:54,600 | INFO     | . log creation = 0 s
[2025-10-11 21:53:34] 2025-10-12 01:52:54,600 | INFO     | ..............................
[2025-10-11 21:53:34] 2025-10-12 01:52:55,090 | INFO     | 
[2025-10-11 21:53:34] 2025-10-12 01:52:55,091 | INFO     | job summary report
[2025-10-11 21:53:34] 2025-10-12 01:52:55,091 | INFO     | --------------------------------------------------
[2025-10-11 21:53:34] 2025-10-12 01:52:55,091 | INFO     | PanDA job id: 6838850607
[2025-10-11 21:53:34] 2025-10-12 01:52:55,091 | INFO     | task id: 46676269
[2025-10-11 21:53:34] 2025-10-12 01:52:55,091 | INFO     | errors: (none)
[2025-10-11 21:53:34] 2025-10-12 01:52:55,091 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 21:53:34] 2025-10-12 01:52:55,091 | INFO     | pilot state: finished 
[2025-10-11 21:53:34] 2025-10-12 01:52:55,091 | INFO     | transexitcode: 0
[2025-10-11 21:53:34] 2025-10-12 01:52:55,091 | INFO     | exeerrorcode: 0
[2025-10-11 21:53:34] 2025-10-12 01:52:55,091 | INFO     | exeerrordiag: 
[2025-10-11 21:53:34] 2025-10-12 01:52:55,091 | INFO     | exitcode: 0
[2025-10-11 21:53:34] 2025-10-12 01:52:55,091 | INFO     | exitmsg: OK
[2025-10-11 21:53:34] 2025-10-12 01:52:55,092 | INFO     | cpuconsumptiontime: 21085 s
[2025-10-11 21:53:34] 2025-10-12 01:52:55,092 | INFO     | nevents: 400
[2025-10-11 21:53:34] 2025-10-12 01:52:55,092 | INFO     | neventsw: 0
[2025-10-11 21:53:34] 2025-10-12 01:52:55,092 | INFO     | pid: 17025
[2025-10-11 21:53:34] 2025-10-12 01:52:55,092 | INFO     | pgrp: 17025
[2025-10-11 21:53:34] 2025-10-12 01:52:55,092 | INFO     | corecount: 4
[2025-10-11 21:53:34] 2025-10-12 01:52:55,092 | INFO     | event service: False
[2025-10-11 21:53:34] 2025-10-12 01:52:55,092 | INFO     | sizes: {0: 2348855, 3: 2349117, 11: 2349145, 5532: 2375866, 5534: 2384864, 5537: 2384920, 5540: 2385242}
[2025-10-11 21:53:34] 2025-10-12 01:52:55,092 | INFO     | --------------------------------------------------
[2025-10-11 21:53:34] 2025-10-12 01:52:55,092 | INFO     | 
[2025-10-11 21:53:34] 2025-10-12 01:52:55,092 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 21:53:34] 2025-10-12 01:52:55,113 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 21:53:34] 2025-10-12 01:52:55,113 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 21:53:34] 2025-10-12 01:52:55,113 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 21:53:34] 2025-10-12 01:52:55,114 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 21:53:34] 2025-10-12 01:52:55,114 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 21:53:34] 2025-10-12 01:52:55,114 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 21:53:34] 2025-10-12 01:52:55,114 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 21:53:34] 2025-10-12 01:52:55,114 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 21:53:34] 2025-10-12 01:52:55,114 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 21:53:34] 2025-10-12 01:52:55,114 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 21:53:34] 2025-10-12 01:52:55,114 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 21:53:34] 2025-10-12 01:52:55,115 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 21:53:34] 2025-10-12 01:52:55,115 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 21:53:34] 2025-10-12 01:52:55,115 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 21:53:34] 2025-10-12 01:52:55,115 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 21:53:34] 2025-10-12 01:52:55,115 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 21:53:34] 2025-10-12 01:52:55,115 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 21:53:34] 2025-10-12 01:52:55,115 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 21:53:34] 2025-10-12 01:52:55,116 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 21:53:34] 2025-10-12 01:52:55,116 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 21:53:34] 2025-10-12 01:52:55,116 | INFO     | job 6838850607 has completed (purged errors)
[2025-10-11 21:53:34] 2025-10-12 01:52:55,116 | INFO     | overall cleanup function is called
[2025-10-11 21:53:34] 2025-10-12 01:52:56,123 | INFO     | --- collectZombieJob: --- 10, [17025]
[2025-10-11 21:53:34] 2025-10-12 01:52:56,124 | INFO     | zombie collector waiting for pid 17025
[2025-10-11 21:53:34] 2025-10-12 01:52:56,124 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 21:53:34] 2025-10-12 01:52:56,124 | INFO     | collected zombie processes
[2025-10-11 21:53:34] 2025-10-12 01:52:56,124 | INFO     | will attempt to kill all subprocesses of pid=17025
[2025-10-11 21:53:34] 2025-10-12 01:52:56,154 | INFO     | process IDs to be killed: [17025] (in reverse order)
[2025-10-11 21:53:34] 2025-10-12 01:52:56,177 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 21:53:34] 2025-10-12 01:52:56,177 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 21:53:34] 2025-10-12 01:52:56,178 | INFO     | did not find any defunct processes belonging to 17025
[2025-10-11 21:53:34] 2025-10-12 01:52:56,179 | INFO     | did not find any defunct processes belonging to 17025
[2025-10-11 21:53:34] 2025-10-12 01:52:56,179 | INFO     | ready for new job
[2025-10-11 21:53:34] 2025-10-12 01:52:56,179 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 21:53:34] 2025-10-12 01:52:56,180 | INFO     | ***************************************
[2025-10-11 21:53:34] 2025-10-12 01:52:56,180 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 21:53:34] 2025-10-12 01:52:56,180 | INFO     | ***************************************
[2025-10-11 21:53:34] 2025-10-12 01:52:56,180 | INFO     | 
[2025-10-11 21:53:34] 2025-10-12 01:52:56,180 | INFO     | architecture information:
[2025-10-11 21:53:34] 2025-10-12 01:52:56,180 | INFO     | executing command: cat /etc/os-release
[2025-10-11 21:53:34] 2025-10-12 01:52:56,188 | INFO     | cat /etc/os-release:
[2025-10-11 21:53:34] NAME="CentOS Linux"
[2025-10-11 21:53:34] VERSION="7 (Core)"
[2025-10-11 21:53:34] ID="centos"
[2025-10-11 21:53:34] ID_LIKE="rhel fedora"
[2025-10-11 21:53:34] VERSION_ID="7"
[2025-10-11 21:53:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 21:53:34] ANSI_COLOR="0;31"
[2025-10-11 21:53:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 21:53:34] HOME_URL="https://www.centos.org/"
[2025-10-11 21:53:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 21:53:34] 
[2025-10-11 21:53:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 21:53:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 21:53:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 21:53:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 21:53:34] 
[2025-10-11 21:53:34] 2025-10-12 01:52:56,188 | INFO     | ***************************************
[2025-10-11 21:53:34] 2025-10-12 01:52:56,689 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 21:53:34] 2025-10-12 01:52:56,707 | INFO     | sufficient remaining disk space (29352787968 B)
[2025-10-11 21:53:34] 2025-10-12 01:52:56,708 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 21:53:34] 2025-10-12 01:52:56,708 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 21:53:34] 2025-10-12 01:52:56,708 | INFO     | update_server=False
[2025-10-11 21:53:34] 2025-10-12 01:52:56,708 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 21:53:34] 2025-10-12 01:52:56,709 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 21:53:34] 2025-10-12 01:52:56,709 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 21:53:34] 2025-10-12 01:52:56,709 | INFO     | aborting loop
[2025-10-11 21:53:34] 2025-10-12 01:52:56,910 | INFO     | all payload control threads have been joined
[2025-10-11 21:53:34] 2025-10-12 01:52:57,123 | INFO     | all data control threads have been joined
[2025-10-11 21:53:34] 2025-10-12 01:52:57,264 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 21:53:34] 2025-10-12 01:52:57,714 | INFO     | [job] retrieve thread has finished
[2025-10-11 21:53:34] 2025-10-12 01:52:57,715 | INFO     | [job] job monitor thread has finished
[2025-10-11 21:53:34] 2025-10-12 01:52:57,773 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 21:53:34] 2025-10-12 01:52:57,871 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 21:53:34] 2025-10-12 01:52:57,915 | INFO     | [payload] control thread has finished
[2025-10-11 21:53:34] 2025-10-12 01:52:57,937 | INFO     | all job control threads have been joined
[2025-10-11 21:53:34] 2025-10-12 01:52:58,052 | INFO     | [data] copytool_in thread has finished
[2025-10-11 21:53:34] 2025-10-12 01:52:58,129 | INFO     | [data] control thread has finished
[2025-10-11 21:53:34] 2025-10-12 01:52:58,220 | INFO     | [payload] failed_post thread has finished
[2025-10-11 21:53:34] 2025-10-12 01:52:58,549 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 21:53:34] 2025-10-12 01:52:58,714 | INFO     | [data] copytool_out thread has finished
[2025-10-11 21:53:34] 2025-10-12 01:52:58,829 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 21:53:34] 2025-10-12 01:52:58,942 | INFO     | [job] control thread has finished
[2025-10-11 21:53:34] 2025-10-12 01:52:59,211 | INFO     | [job] validate thread has finished
[2025-10-11 21:53:34] 2025-10-12 01:52:59,285 | INFO     | [payload] validate_post thread has finished
[2025-10-11 21:53:34] 2025-10-12 01:52:59,648 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 21:53:34] 2025-10-12 01:53:00,649 | INFO     | [job] queue monitor thread has finished
[2025-10-11 21:53:34] 2025-10-12 01:53:01,269 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 21:53:34] 2025-10-12 01:53:27,203 | INFO     | PID=10684 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 21:53:34] 2025-10-12 01:53:27,203 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 21:53:34] 2025-10-12 01:53:27,203 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 21:53:34] 2025-10-12 01:53:27,203 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 21:53:34] 2025-10-12 01:53:29,076 | INFO     | [monitor] cgroup control has ended
[2025-10-11 21:53:34] 2025-10-12 01:53:29,785 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140476612511552)>', '<ExcThread(monitor, started 140475931539200)>']
[2025-10-11 21:53:34] 2025-10-12 01:53:30,219 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 21:53:34] 2025-10-12 01:53:30,219 | INFO     | [monitor] control thread has ended
[2025-10-11 21:53:34] 2025-10-12 01:53:34,803 | INFO     | all workflow threads have been joined
[2025-10-11 21:53:34] 2025-10-12 01:53:34,803 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 21:53:34] 2025-10-12 01:53:34,803 | INFO     | traces error code: 0
[2025-10-11 21:53:34] 2025-10-12 01:53:34,804 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 21:53:34] 2025-10-12 01:53:34,862 [wrapper] ==== pilot stdout END ====
[2025-10-11 21:53:34] 2025-10-12 01:53:34,864 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 21:53:34] 2025-10-12 01:53:34,866 [wrapper] pilotpid: 10684
[2025-10-11 21:53:34] 2025-10-12 01:53:34,868 [wrapper] Pilot exit status: 0
[2025-10-11 21:53:34] 2025-10-12 01:53:34,874 [wrapper] pandaids: 6838850607
[2025-10-11 21:53:34] 2025-10-12 01:53:34,889 [wrapper] cleanup supervisor_pilot 15671 10685
[2025-10-11 21:53:34] 2025-10-12 01:53:34,890 [wrapper] Test setup, not cleaning
[2025-10-11 21:53:34] 2025-10-12 01:53:34,892 [wrapper] apfmon messages muted
[2025-10-11 21:53:34] 2025-10-12 01:53:34,894 [wrapper] ==== wrapper stdout END ====
[2025-10-11 21:53:34] 2025-10-12 01:53:34,896 [wrapper] ==== wrapper stderr END ====
[2025-10-11 21:53:34]  *** Error codes and diagnostics ***
[2025-10-11 21:53:34]     "exeErrorCode": 0,
[2025-10-11 21:53:34]     "exeErrorDiag": "",
[2025-10-11 21:53:34]     "pilotErrorCode": 0,
[2025-10-11 21:53:34]     "pilotErrorDiag": "",
[2025-10-11 21:53:34]  *** Listing of results directory ***
[2025-10-11 21:53:34] total 417084
[2025-10-11 21:53:34] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 15:02 pilot3.tar.gz
[2025-10-11 21:53:34] -rwx------ 1 boincer umatlas     36292 Oct 11 15:05 runpilot2-wrapper.sh
[2025-10-11 21:53:34] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 15:05 queuedata.json
[2025-10-11 21:53:34] -rw-r--r-- 1 boincer umatlas       100 Oct 11 20:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 21:53:34] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 20:20 run_atlas
[2025-10-11 21:53:34] -rw-r--r-- 1 boincer umatlas       105 Oct 11 20:20 job.xml
[2025-10-11 21:53:34] -rw-r--r-- 2 boincer umatlas 224343582 Oct 11 20:20 EVNT.46676267._002543.pool.root.1
[2025-10-11 21:53:34] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 20:20 start_atlas.sh
[2025-10-11 21:53:34] drwxrwx--x 2 boincer umatlas      4096 Oct 11 20:20 shared
[2025-10-11 21:53:34] -rw-r--r-- 2 boincer umatlas    569676 Oct 11 20:20 input.tar.gz
[2025-10-11 21:53:34] -rw-r--r-- 1 boincer umatlas         0 Oct 11 20:20 boinc_lockfile
[2025-10-11 21:53:34] -rw-r--r-- 1 boincer umatlas      2549 Oct 11 20:20 pandaJob.out
[2025-10-11 21:53:34] -rw------- 1 boincer umatlas    975496 Oct 11 20:20 agis_schedconf.cvmfs.json
[2025-10-11 21:53:34] -rw------- 1 boincer umatlas   1560580 Oct 11 20:20 agis_ddmendpoints.agis.ALL.json
[2025-10-11 21:53:34] drwx------ 5 boincer umatlas      4096 Oct 11 20:20 pilot3
[2025-10-11 21:53:34] -rw-r--r-- 1 boincer umatlas      6237 Oct 11 21:45 init_data.xml
[2025-10-11 21:53:34] -rw------- 1 boincer umatlas 196708815 Oct 11 21:52 HITS.46676269._063283.pool.root.1
[2025-10-11 21:53:34] -rw-r--r-- 1 boincer umatlas       530 Oct 11 21:52 boinc_task_state.xml
[2025-10-11 21:53:34] -rw------- 1 boincer umatlas      1054 Oct 11 21:52 memory_monitor_summary.json
[2025-10-11 21:53:34] -rw------- 1 boincer umatlas    266536 Oct 11 21:52 log.46676269._063283.job.log.tgz.1
[2025-10-11 21:53:34] -rw------- 1 boincer umatlas      7828 Oct 11 21:52 heartbeat.json
[2025-10-11 21:53:34] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 21:53 boinc_mmap_file
[2025-10-11 21:53:34] -rw-r--r-- 1 boincer umatlas        27 Oct 11 21:53 wrapper_checkpoint.txt
[2025-10-11 21:53:34] -rw------- 1 boincer umatlas        95 Oct 11 21:53 pilot_heartbeat.json
[2025-10-11 21:53:34] -rw------- 1 boincer umatlas      4746 Oct 11 21:53 pilotlog.txt
[2025-10-11 21:53:34] -rw------- 1 boincer umatlas    804352 Oct 11 21:53 log.46676269._063283.job.log.1
[2025-10-11 21:53:34] -rw------- 1 boincer umatlas       357 Oct 11 21:53 output.list
[2025-10-11 21:53:34] -rw-r--r-- 1 boincer umatlas       620 Oct 11 21:53 runtime_log
[2025-10-11 21:53:34] -rw------- 1 boincer umatlas   1085440 Oct 11 21:53 result.tar.gz
[2025-10-11 21:53:34] -rw-r--r-- 1 boincer umatlas      8703 Oct 11 21:53 runtime_log.err
[2025-10-11 21:53:34] -rw------- 1 boincer umatlas       656 Oct 11 21:53 R2PODm04tR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmeMhNDm4aTjQn.diag
[2025-10-11 21:53:34] -rw-r--r-- 1 boincer umatlas     21669 Oct 11 21:53 stderr.txt
[2025-10-11 21:53:34] HITS file was successfully produced:
[2025-10-11 21:53:34] -rw------- 1 boincer umatlas 196708815 Oct 11 21:52 shared/HITS.pool.root.1
[2025-10-11 21:53:34]  *** Contents of shared directory: ***
[2025-10-11 21:53:34] total 412828
[2025-10-11 21:53:34] -rw-r--r-- 2 boincer umatlas 224343582 Oct 11 20:20 ATLAS.root_0
[2025-10-11 21:53:34] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 20:20 start_atlas.sh
[2025-10-11 21:53:34] -rw-r--r-- 2 boincer umatlas    569676 Oct 11 20:20 input.tar.gz
[2025-10-11 21:53:34] -rw------- 1 boincer umatlas 196708815 Oct 11 21:52 HITS.pool.root.1
[2025-10-11 21:53:34] -rw------- 1 boincer umatlas   1085440 Oct 11 21:53 result.tar.gz
21:53:36 (6936): run_atlas exited; CPU time 21097.672088
21:53:36 (6936): called boinc_finish(0)

</stderr_txt>
]]>

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