Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:55:26 (3529407): wrapper (7.7.26015): starting
11:55:26 (3529407): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 11:55:26] Arguments: --nthreads 4
[2025-10-12 11:55:26] Threads: 4
[2025-10-12 11:55:26] Checking for CVMFS
[2025-10-12 11:55:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:55:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:55:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:55:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:55:26] 2.9.2.0 2032506 4154 103660 151615 0 57 26280810 36864001 0 130560 0 3732960 99.992 137776 894 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 11:55:26] CVMFS is ok
[2025-10-12 11:55:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:55:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:55:26] Further information can be found at the LHC@home message board.
[2025-10-12 11:55:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:55:26] Checking for apptainer binary...
[2025-10-12 11:55:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:55:26] Running /usr/bin/apptainer --version
[2025-10-12 11:55:26] apptainer version 1.4.1-1.1
[2025-10-12 11:55:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:55:26] madmaxA277
[2025-10-12 11:55:26] apptainer works
[2025-10-12 11:55:26] Set ATHENA_PROC_NUMBER=4
[2025-10-12 11:55:26] Set ATHENA_CORE_NUMBER=4
[2025-10-12 11:55:26] Starting ATLAS job with PandaID=6836605833
[2025-10-12 11:55:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:05:46]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:05:46] 2025-10-12 11:05:14,019 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:05:46] 2025-10-12 11:05:14,019 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:05:46] 2025-10-12 11:05:14,019 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:05:46] 2025-10-12 11:05:14,019 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:05:46] 2025-10-12 11:05:14,019 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:05:46] 2025-10-12 11:05:14,019 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:05:46] 2025-10-12 11:05:14,019 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:05:46] 2025-10-12 11:05:14,019 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:05:46] 2025-10-12 11:05:14,019 | INFO     | job 6836605833 has completed (purged errors)
[2025-10-12 13:05:46] 2025-10-12 11:05:14,019 | INFO     | overall cleanup function is called
[2025-10-12 13:05:46] 2025-10-12 11:05:14,229 | INFO     | PID=3533203 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 13:05:46] 2025-10-12 11:05:15,026 | INFO     | --- collectZombieJob: --- 10, [3539770]
[2025-10-12 13:05:46] 2025-10-12 11:05:15,026 | INFO     | zombie collector waiting for pid 3539770
[2025-10-12 13:05:46] 2025-10-12 11:05:15,026 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:05:46] 2025-10-12 11:05:15,026 | INFO     | collected zombie processes
[2025-10-12 13:05:46] 2025-10-12 11:05:15,026 | INFO     | will attempt to kill all subprocesses of pid=3539770
[2025-10-12 13:05:46] 2025-10-12 11:05:15,070 | INFO     | process IDs to be killed: [3539770] (in reverse order)
[2025-10-12 13:05:46] 2025-10-12 11:05:15,103 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:05:46] 2025-10-12 11:05:15,104 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:05:46] 2025-10-12 11:05:15,105 | INFO     | did not find any defunct processes belonging to 3539770
[2025-10-12 13:05:46] 2025-10-12 11:05:15,107 | INFO     | did not find any defunct processes belonging to 3539770
[2025-10-12 13:05:46] 2025-10-12 11:05:15,107 | INFO     | ready for new job
[2025-10-12 13:05:46] 2025-10-12 11:05:15,107 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:05:46] 2025-10-12 11:05:15,108 | INFO     | ***************************************
[2025-10-12 13:05:46] 2025-10-12 11:05:15,108 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:05:46] 2025-10-12 11:05:15,108 | INFO     | ***************************************
[2025-10-12 13:05:46] 2025-10-12 11:05:15,108 | INFO     | 
[2025-10-12 13:05:46] 2025-10-12 11:05:15,108 | INFO     | architecture information:
[2025-10-12 13:05:46] 2025-10-12 11:05:15,109 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:05:46] 2025-10-12 11:05:15,122 | INFO     | cat /etc/os-release:
[2025-10-12 13:05:46] NAME="CentOS Linux"
[2025-10-12 13:05:46] VERSION="7 (Core)"
[2025-10-12 13:05:46] ID="centos"
[2025-10-12 13:05:46] ID_LIKE="rhel fedora"
[2025-10-12 13:05:46] VERSION_ID="7"
[2025-10-12 13:05:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:05:46] ANSI_COLOR="0;31"
[2025-10-12 13:05:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:05:46] HOME_URL="https://www.centos.org/"
[2025-10-12 13:05:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:05:46] 
[2025-10-12 13:05:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:05:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:05:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:05:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:05:46] 
[2025-10-12 13:05:46] 2025-10-12 11:05:15,122 | INFO     | ***************************************
[2025-10-12 13:05:46] 2025-10-12 11:05:15,625 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 13:05:46] 2025-10-12 11:05:15,639 | INFO     | sufficient remaining disk space (333387399168 B)
[2025-10-12 13:05:46] 2025-10-12 11:05:15,639 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:05:46] 2025-10-12 11:05:15,639 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:05:46] 2025-10-12 11:05:15,639 | INFO     | update_server=False
[2025-10-12 13:05:46] 2025-10-12 11:05:15,639 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:05:46] 2025-10-12 11:05:15,648 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:05:46] 2025-10-12 11:05:15,649 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 13:05:46] 2025-10-12 11:05:15,649 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 13:05:46] 2025-10-12 11:05:15,649 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:05:46] 2025-10-12 11:05:15,649 | INFO     | will abort loop
[2025-10-12 13:05:46] 2025-10-12 11:05:15,991 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:05:46] 2025-10-12 11:05:16,096 | INFO     | all data control threads have been joined
[2025-10-12 13:05:46] 2025-10-12 11:05:16,618 | INFO     | all payload control threads have been joined
[2025-10-12 13:05:46] 2025-10-12 11:05:16,645 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:05:46] 2025-10-12 11:05:16,655 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:05:46] 2025-10-12 11:05:16,676 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:05:46] 2025-10-12 11:05:16,707 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:05:46] 2025-10-12 11:05:16,783 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:05:46] 2025-10-12 11:05:17,043 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:05:46] 2025-10-12 11:05:17,101 | INFO     | [data] control thread has finished
[2025-10-12 13:05:46] 2025-10-12 11:05:17,218 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:05:46] 2025-10-12 11:05:17,319 | INFO     | all job control threads have been joined
[2025-10-12 13:05:46] 2025-10-12 11:05:17,623 | INFO     | [payload] control thread has finished
[2025-10-12 13:05:46] 2025-10-12 11:05:17,654 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:05:46] 2025-10-12 11:05:17,859 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:05:46] 2025-10-12 11:05:18,057 | INFO     | [job] validate thread has finished
[2025-10-12 13:05:46] 2025-10-12 11:05:18,324 | INFO     | [job] control thread has finished
[2025-10-12 13:05:46] 2025-10-12 11:05:18,616 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:05:46] 2025-10-12 11:05:19,622 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:05:46] 2025-10-12 11:05:19,996 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:05:46] 2025-10-12 11:05:26,249 | INFO     | job.realtimelogging is not enabled
[2025-10-12 13:05:46] 2025-10-12 11:05:27,255 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:05:46] 2025-10-12 11:05:38,456 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:05:46] 2025-10-12 11:05:39,215 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139672929781568)>', '<ExcThread(monitor, started 139672059635456)>']
[2025-10-12 13:05:46] 2025-10-12 11:05:44,240 | INFO     | all workflow threads have been joined
[2025-10-12 13:05:46] 2025-10-12 11:05:44,241 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:05:46] 2025-10-12 11:05:44,241 | INFO     | traces error code: 0
[2025-10-12 13:05:46] 2025-10-12 11:05:44,241 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:05:46] 2025-10-12 11:05:46,392 | INFO     | PID=3533203 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 13:05:46] 2025-10-12 11:05:46,393 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:05:46] 2025-10-12 11:05:46,393 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:05:46] 2025-10-12 11:05:46,393 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:05:46] 2025-10-12 11:05:46,393 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:05:46] 2025-10-12 11:05:46,393 | INFO     | [monitor] control thread has ended
[2025-10-12 13:05:46] 2025-10-12 11:05:46,469 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:05:46] 2025-10-12 11:05:46,473 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:05:46] 2025-10-12 11:05:46,477 [wrapper] pilotpid: 3533203
[2025-10-12 13:05:46] 2025-10-12 11:05:46,481 [wrapper] Pilot exit status: 0
[2025-10-12 13:05:46] 2025-10-12 11:05:46,494 [wrapper] pandaids: 6836605833
[2025-10-12 13:05:46] 2025-10-12 11:05:46,515 [wrapper] cleanup supervisor_pilot 3551797 3533204
[2025-10-12 13:05:46] 2025-10-12 11:05:46,519 [wrapper] Test setup, not cleaning
[2025-10-12 13:05:46] 2025-10-12 11:05:46,523 [wrapper] apfmon messages muted
[2025-10-12 13:05:46] 2025-10-12 11:05:46,527 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:05:46] 2025-10-12 11:05:46,531 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:05:46]  *** Error codes and diagnostics ***
[2025-10-12 13:05:46]     "exeErrorCode": 0,
[2025-10-12 13:05:46]     "exeErrorDiag": "",
[2025-10-12 13:05:46]     "pilotErrorCode": 0,
[2025-10-12 13:05:46]     "pilotErrorDiag": "",
[2025-10-12 13:05:46]  *** Listing of results directory ***
[2025-10-12 13:05:46] total 411336
[2025-10-12 13:05:46] -rw-r--r-- 1 boinc boinc    557409 Oct  9 01:22 pilot3.tar.gz
[2025-10-12 13:05:46] -rw-r--r-- 1 boinc boinc      5112 Oct  9 01:22 queuedata.json
[2025-10-12 13:05:46] -rwx------ 1 boinc boinc     36292 Oct  9 01:22 runpilot2-wrapper.sh
[2025-10-12 13:05:46] -rw-r--r-- 1 boinc boinc       100 Oct 12 11:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:05:46] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 11:55 run_atlas
[2025-10-12 13:05:46] -rw-r--r-- 1 boinc boinc       105 Oct 12 11:55 job.xml
[2025-10-12 13:05:46] -rw-r--r-- 2 boinc boinc 220207069 Oct 12 11:55 EVNT.46676267._000443.pool.root.1
[2025-10-12 13:05:46] -rw-r--r-- 2 boinc boinc    569674 Oct 12 11:55 input.tar.gz
[2025-10-12 13:05:46] -rw-r--r-- 2 boinc boinc     15120 Oct 12 11:55 start_atlas.sh
[2025-10-12 13:05:46] drwxrwx--x 2 boinc boinc      4096 Oct 12 11:55 shared
[2025-10-12 13:05:46] -rw-r--r-- 1 boinc boinc         0 Oct 12 11:55 boinc_setup_complete
[2025-10-12 13:05:46] -rw-r--r-- 1 boinc boinc      6373 Oct 12 11:55 init_data.xml
[2025-10-12 13:05:46] -rw-r--r-- 1 boinc boinc         0 Oct 12 11:55 boinc_lockfile
[2025-10-12 13:05:46] -rw-r--r-- 1 boinc boinc      2549 Oct 12 11:55 pandaJob.out
[2025-10-12 13:05:46] -rw------- 1 boinc boinc    975536 Oct 12 11:55 agis_schedconf.cvmfs.json
[2025-10-12 13:05:46] -rw------- 1 boinc boinc   1560580 Oct 12 11:55 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:05:46] drwx------ 5 boinc boinc      4096 Oct 12 11:55 pilot3
[2025-10-12 13:05:46] -rw------- 1 boinc boinc 195325031 Oct 12 13:04 HITS.46676269._010917.pool.root.1
[2025-10-12 13:05:46] -rw-r--r-- 1 boinc boinc       529 Oct 12 13:04 boinc_task_state.xml
[2025-10-12 13:05:46] -rw------- 1 boinc boinc        95 Oct 12 13:04 pilot_heartbeat.json
[2025-10-12 13:05:46] -rw------- 1 boinc boinc      1023 Oct 12 13:05 memory_monitor_summary.json
[2025-10-12 13:05:46] -rw------- 1 boinc boinc    271080 Oct 12 13:05 log.46676269._010917.job.log.tgz.1
[2025-10-12 13:05:46] -rw------- 1 boinc boinc      7781 Oct 12 13:05 heartbeat.json
[2025-10-12 13:05:46] -rw-r--r-- 1 boinc boinc        27 Oct 12 13:05 wrapper_checkpoint.txt
[2025-10-12 13:05:46] -rw-r--r-- 1 boinc boinc      8192 Oct 12 13:05 boinc_mmap_file
[2025-10-12 13:05:46] -rw------- 1 boinc boinc       747 Oct 12 13:05 pilotlog.txt
[2025-10-12 13:05:46] -rw------- 1 boinc boinc    621766 Oct 12 13:05 log.46676269._010917.job.log.1
[2025-10-12 13:05:46] -rw------- 1 boinc boinc       357 Oct 12 13:05 output.list
[2025-10-12 13:05:46] -rw-r--r-- 1 boinc boinc       620 Oct 12 13:05 runtime_log
[2025-10-12 13:05:46] -rw------- 1 boinc boinc    911360 Oct 12 13:05 result.tar.gz
[2025-10-12 13:05:46] -rw-r--r-- 1 boinc boinc      8797 Oct 12 13:05 runtime_log.err
[2025-10-12 13:05:46] -rw------- 1 boinc boinc       662 Oct 12 13:05 JsTMDmlfsQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmXCNMDmoRLeun.diag
[2025-10-12 13:05:46] -rw-r--r-- 1 boinc boinc     12171 Oct 12 13:05 stderr.txt
[2025-10-12 13:05:46] HITS file was successfully produced:
[2025-10-12 13:05:46] -rw------- 1 boinc boinc 195325031 Oct 12 13:04 shared/HITS.pool.root.1
[2025-10-12 13:05:46]  *** Contents of shared directory: ***
[2025-10-12 13:05:46] total 407272
[2025-10-12 13:05:46] -rw-r--r-- 2 boinc boinc 220207069 Oct 12 11:55 ATLAS.root_0
[2025-10-12 13:05:46] -rw-r--r-- 2 boinc boinc    569674 Oct 12 11:55 input.tar.gz
[2025-10-12 13:05:46] -rw-r--r-- 2 boinc boinc     15120 Oct 12 11:55 start_atlas.sh
[2025-10-12 13:05:46] -rw------- 1 boinc boinc 195325031 Oct 12 13:04 HITS.pool.root.1
[2025-10-12 13:05:46] -rw------- 1 boinc boinc    911360 Oct 12 13:05 result.tar.gz
13:05:48 (3529407): run_atlas exited; CPU time 15782.762638
13:05:48 (3529407): called boinc_finish(0)

</stderr_txt>
]]>

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