Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:47:31 (2507487): wrapper (7.7.26015): starting
16:47:31 (2507487): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 16:47:31] Arguments: --nthreads 3
[2025-10-12 16:47:31] Threads: 3
[2025-10-12 16:47:31] Checking for CVMFS
[2025-10-12 16:47:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:47:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:47:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:47:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:47:32] 2.9.2.0 1182477 4566 82068 151623 0 57 3742565 36864000 0 130560 0 3487522 99.991 154790 911 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 16:47:32] CVMFS is ok
[2025-10-12 16:47:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:47:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:47:32] Further information can be found at the LHC@home message board.
[2025-10-12 16:47:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:47:32] Checking for apptainer binary...
[2025-10-12 16:47:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:47:32] Running /usr/bin/apptainer --version
[2025-10-12 16:47:32] apptainer version 1.4.1-1.1
[2025-10-12 16:47:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:47:32] thA332
[2025-10-12 16:47:32] apptainer works
[2025-10-12 16:47:32] Set ATHENA_PROC_NUMBER=3
[2025-10-12 16:47:32] Set ATHENA_CORE_NUMBER=3
[2025-10-12 16:47:32] Starting ATLAS job with PandaID=6838849710
[2025-10-12 16:47:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:13:55]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:13:55] 2025-10-12 16:13:24,255 | INFO     | zombie collector waiting for pid 2517636
[2025-10-12 18:13:55] 2025-10-12 16:13:24,255 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:13:55] 2025-10-12 16:13:24,255 | INFO     | collected zombie processes
[2025-10-12 18:13:55] 2025-10-12 16:13:24,255 | INFO     | will attempt to kill all subprocesses of pid=2517636
[2025-10-12 18:13:55] 2025-10-12 16:13:24,300 | INFO     | process IDs to be killed: [2517636] (in reverse order)
[2025-10-12 18:13:55] 2025-10-12 16:13:24,324 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:13:55] 2025-10-12 16:13:24,324 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:13:55] 2025-10-12 16:13:24,325 | INFO     | did not find any defunct processes belonging to 2517636
[2025-10-12 18:13:55] 2025-10-12 16:13:24,326 | INFO     | did not find any defunct processes belonging to 2517636
[2025-10-12 18:13:55] 2025-10-12 16:13:24,326 | INFO     | ready for new job
[2025-10-12 18:13:55] 2025-10-12 16:13:24,326 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:13:55] 2025-10-12 16:13:24,327 | INFO     | ***************************************
[2025-10-12 18:13:55] 2025-10-12 16:13:24,327 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 18:13:55] 2025-10-12 16:13:24,327 | INFO     | ***************************************
[2025-10-12 18:13:55] 2025-10-12 16:13:24,327 | INFO     | 
[2025-10-12 18:13:55] 2025-10-12 16:13:24,327 | INFO     | architecture information:
[2025-10-12 18:13:55] 2025-10-12 16:13:24,328 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:13:55] 2025-10-12 16:13:24,336 | INFO     | cat /etc/os-release:
[2025-10-12 18:13:55] NAME="CentOS Linux"
[2025-10-12 18:13:55] VERSION="7 (Core)"
[2025-10-12 18:13:55] ID="centos"
[2025-10-12 18:13:55] ID_LIKE="rhel fedora"
[2025-10-12 18:13:55] VERSION_ID="7"
[2025-10-12 18:13:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:13:55] ANSI_COLOR="0;31"
[2025-10-12 18:13:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:13:55] HOME_URL="https://www.centos.org/"
[2025-10-12 18:13:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:13:55] 
[2025-10-12 18:13:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:13:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:13:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:13:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:13:55] 
[2025-10-12 18:13:55] 2025-10-12 16:13:24,336 | INFO     | ***************************************
[2025-10-12 18:13:55] 2025-10-12 16:13:24,840 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 18:13:55] 2025-10-12 16:13:24,852 | INFO     | sufficient remaining disk space (255747686400 B)
[2025-10-12 18:13:55] 2025-10-12 16:13:24,852 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:13:55] 2025-10-12 16:13:24,852 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:13:55] 2025-10-12 16:13:24,852 | INFO     | update_server=False
[2025-10-12 18:13:55] 2025-10-12 16:13:24,852 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:13:55] 2025-10-12 16:13:24,853 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:13:55] 2025-10-12 16:13:24,853 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:13:55] 2025-10-12 16:13:24,853 | INFO     | aborting loop
[2025-10-12 18:13:55] 2025-10-12 16:13:24,929 | INFO     | all job control threads have been joined
[2025-10-12 18:13:55] 2025-10-12 16:13:25,153 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:13:55] 2025-10-12 16:13:25,274 | INFO     | all payload control threads have been joined
[2025-10-12 18:13:55] 2025-10-12 16:13:25,858 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:13:55] 2025-10-12 16:13:25,858 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:13:55] 2025-10-12 16:13:25,859 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:13:55] 2025-10-12 16:13:25,935 | INFO     | [job] control thread has finished
[2025-10-12 18:13:55] 2025-10-12 16:13:25,936 | INFO     | all data control threads have been joined
[2025-10-12 18:13:55] 2025-10-12 16:13:25,950 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:13:55] 2025-10-12 16:13:26,268 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:13:55] 2025-10-12 16:13:26,279 | INFO     | [payload] control thread has finished
[2025-10-12 18:13:55] 2025-10-12 16:13:26,436 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:13:55] 2025-10-12 16:13:26,754 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:13:55] 2025-10-12 16:13:26,788 | INFO     | [job] validate thread has finished
[2025-10-12 18:13:55] 2025-10-12 16:13:26,871 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:13:55] 2025-10-12 16:13:26,874 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:13:55] 2025-10-12 16:13:26,941 | INFO     | [data] control thread has finished
[2025-10-12 18:13:55] 2025-10-12 16:13:27,159 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:13:55] 2025-10-12 16:13:27,353 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:13:55] 2025-10-12 16:13:28,202 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:13:55] 2025-10-12 16:13:32,209 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:13:55] 2025-10-12 16:13:43,858 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:13:55] 2025-10-12 16:13:44,912 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140225070036800)>', '<ExcThread(monitor, started 140224298477312)>']
[2025-10-12 18:13:55] 2025-10-12 16:13:49,937 | INFO     | all workflow threads have been joined
[2025-10-12 18:13:55] 2025-10-12 16:13:49,938 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:13:55] 2025-10-12 16:13:49,938 | INFO     | traces error code: 0
[2025-10-12 18:13:55] 2025-10-12 16:13:49,938 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:13:55] 2025-10-12 16:13:55,267 | INFO     | PID=2511204 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 18:13:55] 2025-10-12 16:13:55,267 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:13:55] 2025-10-12 16:13:55,267 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:13:55] 2025-10-12 16:13:55,267 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:13:55] 2025-10-12 16:13:55,267 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:13:55] 2025-10-12 16:13:55,267 | INFO     | [monitor] control thread has ended
[2025-10-12 18:13:55] 2025-10-12 16:13:55,315 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:13:55] 2025-10-12 16:13:55,317 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:13:55] 2025-10-12 16:13:55,319 [wrapper] pilotpid: 2511204
[2025-10-12 18:13:55] 2025-10-12 16:13:55,322 [wrapper] Pilot exit status: 0
[2025-10-12 18:13:55] 2025-10-12 16:13:55,329 [wrapper] pandaids: 6838849710
[2025-10-12 18:13:55] 2025-10-12 16:13:55,345 [wrapper] cleanup supervisor_pilot 2529515 2511205
[2025-10-12 18:13:55] 2025-10-12 16:13:55,347 [wrapper] Test setup, not cleaning
[2025-10-12 18:13:55] 2025-10-12 16:13:55,350 [wrapper] apfmon messages muted
[2025-10-12 18:13:55] 2025-10-12 16:13:55,352 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:13:55] 2025-10-12 16:13:55,354 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:13:55]  *** Error codes and diagnostics ***
[2025-10-12 18:13:55]     "exeErrorCode": 0,
[2025-10-12 18:13:55]     "exeErrorDiag": "",
[2025-10-12 18:13:55]     "pilotErrorCode": 0,
[2025-10-12 18:13:55]     "pilotErrorDiag": "",
[2025-10-12 18:13:55]  *** Listing of results directory ***
[2025-10-12 18:13:55] total 413172
[2025-10-12 18:13:55] -rw-r--r-- 1 boinc boinc    557409 Oct 11 20:41 pilot3.tar.gz
[2025-10-12 18:13:55] -rw-r--r-- 1 boinc boinc      5112 Oct 11 20:45 queuedata.json
[2025-10-12 18:13:55] -rwx------ 1 boinc boinc     36292 Oct 11 20:45 runpilot2-wrapper.sh
[2025-10-12 18:13:55] -rw-r--r-- 1 boinc boinc       100 Oct 12 16:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:13:55] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 16:47 run_atlas
[2025-10-12 18:13:55] -rw-r--r-- 1 boinc boinc       105 Oct 12 16:47 job.xml
[2025-10-12 18:13:55] -rw-r--r-- 2 boinc boinc 220380074 Oct 12 16:47 EVNT.46676267._001222.pool.root.1
[2025-10-12 18:13:55] -rw-r--r-- 2 boinc boinc    569682 Oct 12 16:47 input.tar.gz
[2025-10-12 18:13:55] -rw-r--r-- 2 boinc boinc     15120 Oct 12 16:47 start_atlas.sh
[2025-10-12 18:13:55] drwxrwx--x 2 boinc boinc      4096 Oct 12 16:47 shared
[2025-10-12 18:13:55] -rw-r--r-- 1 boinc boinc         0 Oct 12 16:47 boinc_setup_complete
[2025-10-12 18:13:55] -rw-r--r-- 1 boinc boinc      6437 Oct 12 16:47 init_data.xml
[2025-10-12 18:13:55] -rw-r--r-- 1 boinc boinc         0 Oct 12 16:47 boinc_lockfile
[2025-10-12 18:13:55] -rw-r--r-- 1 boinc boinc      2549 Oct 12 16:47 pandaJob.out
[2025-10-12 18:13:55] -rw------- 1 boinc boinc    975528 Oct 12 16:47 agis_schedconf.cvmfs.json
[2025-10-12 18:13:55] -rw------- 1 boinc boinc   1560580 Oct 12 16:47 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:13:55] drwx------ 5 boinc boinc      4096 Oct 12 16:47 pilot3
[2025-10-12 18:13:55] -rw------- 1 boinc boinc 196805874 Oct 12 18:12 HITS.46676269._062972.pool.root.1
[2025-10-12 18:13:55] -rw------- 1 boinc boinc        95 Oct 12 18:13 pilot_heartbeat.json
[2025-10-12 18:13:55] -rw-r--r-- 1 boinc boinc       529 Oct 12 18:13 boinc_task_state.xml
[2025-10-12 18:13:55] -rw------- 1 boinc boinc      1022 Oct 12 18:13 memory_monitor_summary.json
[2025-10-12 18:13:55] -rw------- 1 boinc boinc    252452 Oct 12 18:13 log.46676269._062972.job.log.tgz.1
[2025-10-12 18:13:55] -rw------- 1 boinc boinc      7765 Oct 12 18:13 heartbeat.json
[2025-10-12 18:13:55] -rw-r--r-- 1 boinc boinc      8192 Oct 12 18:13 boinc_mmap_file
[2025-10-12 18:13:55] -rw-r--r-- 1 boinc boinc        27 Oct 12 18:13 wrapper_checkpoint.txt
[2025-10-12 18:13:55] -rw------- 1 boinc boinc       747 Oct 12 18:13 pilotlog.txt
[2025-10-12 18:13:55] -rw------- 1 boinc boinc    753786 Oct 12 18:13 log.46676269._062972.job.log.1
[2025-10-12 18:13:55] -rw------- 1 boinc boinc       357 Oct 12 18:13 output.list
[2025-10-12 18:13:55] -rw-r--r-- 1 boinc boinc       620 Oct 12 18:13 runtime_log
[2025-10-12 18:13:55] -rw------- 1 boinc boinc   1024000 Oct 12 18:13 result.tar.gz
[2025-10-12 18:13:55] -rw-r--r-- 1 boinc boinc      8777 Oct 12 18:13 runtime_log.err
[2025-10-12 18:13:55] -rw------- 1 boinc boinc       658 Oct 12 18:13 ZbrKDmAmtR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm2OSMDmo2vBBo.diag
[2025-10-12 18:13:55] -rw-r--r-- 1 boinc boinc     10513 Oct 12 18:13 stderr.txt
[2025-10-12 18:13:55] HITS file was successfully produced:
[2025-10-12 18:13:55] -rw------- 1 boinc boinc 196805874 Oct 12 18:12 shared/HITS.pool.root.1
[2025-10-12 18:13:55]  *** Contents of shared directory: ***
[2025-10-12 18:13:55] total 408996
[2025-10-12 18:13:55] -rw-r--r-- 2 boinc boinc 220380074 Oct 12 16:47 ATLAS.root_0
[2025-10-12 18:13:55] -rw-r--r-- 2 boinc boinc    569682 Oct 12 16:47 input.tar.gz
[2025-10-12 18:13:55] -rw-r--r-- 2 boinc boinc     15120 Oct 12 16:47 start_atlas.sh
[2025-10-12 18:13:55] -rw------- 1 boinc boinc 196805874 Oct 12 18:12 HITS.pool.root.1
[2025-10-12 18:13:55] -rw------- 1 boinc boinc   1024000 Oct 12 18:13 result.tar.gz
18:13:57 (2507487): run_atlas exited; CPU time 14691.989133
18:13:57 (2507487): called boinc_finish(0)

</stderr_txt>
]]>

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