Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:46:10 (3292606): wrapper (7.7.26015): starting
11:46:10 (3292606): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 11:46:10] Arguments: --nthreads 4
[2025-10-12 11:46:10] Threads: 4
[2025-10-12 11:46:10] Checking for CVMFS
[2025-10-12 11:46:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:46:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:46:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:46:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:46:11] 2.9.2.0 1854055 4143 98164 151615 3 57 29494786 36864001 0 130560 0 3732661 99.992 140427 922 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 11:46:11] CVMFS is ok
[2025-10-12 11:46:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:46:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:46:11] Further information can be found at the LHC@home message board.
[2025-10-12 11:46:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:46:11] Checking for apptainer binary...
[2025-10-12 11:46:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:46:11] Running /usr/bin/apptainer --version
[2025-10-12 11:46:11] apptainer version 1.4.1-1.1
[2025-10-12 11:46:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:46:11] thA332a
[2025-10-12 11:46:11] apptainer works
[2025-10-12 11:46:11] Set ATHENA_PROC_NUMBER=4
[2025-10-12 11:46:11] Set ATHENA_CORE_NUMBER=4
[2025-10-12 11:46:11] Starting ATLAS job with PandaID=6837663201
[2025-10-12 11:46:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:02:33]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:02:33] 2025-10-12 11:02:01,287 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:02:33] 2025-10-12 11:02:01,287 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:02:33] 2025-10-12 11:02:01,287 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:02:33] 2025-10-12 11:02:01,287 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:02:33] 2025-10-12 11:02:01,287 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:02:33] 2025-10-12 11:02:01,287 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:02:33] 2025-10-12 11:02:01,287 | INFO     | job 6837663201 has completed (purged errors)
[2025-10-12 13:02:33] 2025-10-12 11:02:01,287 | INFO     | overall cleanup function is called
[2025-10-12 13:02:33] 2025-10-12 11:02:02,295 | INFO     | --- collectZombieJob: --- 10, [3302963]
[2025-10-12 13:02:33] 2025-10-12 11:02:02,295 | INFO     | zombie collector waiting for pid 3302963
[2025-10-12 13:02:33] 2025-10-12 11:02:02,295 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:02:33] 2025-10-12 11:02:02,295 | INFO     | collected zombie processes
[2025-10-12 13:02:33] 2025-10-12 11:02:02,295 | INFO     | will attempt to kill all subprocesses of pid=3302963
[2025-10-12 13:02:33] 2025-10-12 11:02:02,341 | INFO     | process IDs to be killed: [3302963] (in reverse order)
[2025-10-12 13:02:33] 2025-10-12 11:02:02,374 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:02:33] 2025-10-12 11:02:02,375 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:02:33] 2025-10-12 11:02:02,377 | INFO     | did not find any defunct processes belonging to 3302963
[2025-10-12 13:02:33] 2025-10-12 11:02:02,378 | INFO     | did not find any defunct processes belonging to 3302963
[2025-10-12 13:02:33] 2025-10-12 11:02:02,378 | INFO     | ready for new job
[2025-10-12 13:02:33] 2025-10-12 11:02:02,378 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:02:33] 2025-10-12 11:02:02,379 | INFO     | ***************************************
[2025-10-12 13:02:33] 2025-10-12 11:02:02,379 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:02:33] 2025-10-12 11:02:02,379 | INFO     | ***************************************
[2025-10-12 13:02:33] 2025-10-12 11:02:02,379 | INFO     | 
[2025-10-12 13:02:33] 2025-10-12 11:02:02,379 | INFO     | architecture information:
[2025-10-12 13:02:33] 2025-10-12 11:02:02,380 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:02:33] 2025-10-12 11:02:02,393 | INFO     | cat /etc/os-release:
[2025-10-12 13:02:33] NAME="CentOS Linux"
[2025-10-12 13:02:33] VERSION="7 (Core)"
[2025-10-12 13:02:33] ID="centos"
[2025-10-12 13:02:33] ID_LIKE="rhel fedora"
[2025-10-12 13:02:33] VERSION_ID="7"
[2025-10-12 13:02:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:02:33] ANSI_COLOR="0;31"
[2025-10-12 13:02:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:02:33] HOME_URL="https://www.centos.org/"
[2025-10-12 13:02:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:02:33] 
[2025-10-12 13:02:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:02:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:02:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:02:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:02:33] 
[2025-10-12 13:02:33] 2025-10-12 11:02:02,394 | INFO     | ***************************************
[2025-10-12 13:02:33] 2025-10-12 11:02:02,897 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 13:02:33] 2025-10-12 11:02:02,915 | INFO     | sufficient remaining disk space (330306682880 B)
[2025-10-12 13:02:33] 2025-10-12 11:02:02,915 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:02:33] 2025-10-12 11:02:02,915 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:02:33] 2025-10-12 11:02:02,915 | INFO     | update_server=False
[2025-10-12 13:02:33] 2025-10-12 11:02:02,915 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:02:33] 2025-10-12 11:02:02,916 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:02:33] 2025-10-12 11:02:02,916 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:02:33] 2025-10-12 11:02:02,916 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:02:33] 2025-10-12 11:02:02,916 | INFO     | aborting loop
[2025-10-12 13:02:33] 2025-10-12 11:02:02,986 | INFO     | all payload control threads have been joined
[2025-10-12 13:02:33] 2025-10-12 11:02:03,570 | INFO     | all data control threads have been joined
[2025-10-12 13:02:33] 2025-10-12 11:02:03,839 | INFO     | all job control threads have been joined
[2025-10-12 13:02:33] 2025-10-12 11:02:03,921 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:02:33] 2025-10-12 11:02:03,922 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:02:33] 2025-10-12 11:02:03,922 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:02:33] 2025-10-12 11:02:03,992 | INFO     | [payload] control thread has finished
[2025-10-12 13:02:33] 2025-10-12 11:02:04,054 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:02:33] 2025-10-12 11:02:04,112 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:02:33] 2025-10-12 11:02:04,453 | INFO     | [job] validate thread has finished
[2025-10-12 13:02:33] 2025-10-12 11:02:04,543 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:02:33] 2025-10-12 11:02:04,572 | INFO     | [data] control thread has finished
[2025-10-12 13:02:33] 2025-10-12 11:02:04,612 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:02:33] 2025-10-12 11:02:04,653 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:02:33] 2025-10-12 11:02:04,831 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:02:33] 2025-10-12 11:02:04,844 | INFO     | [job] control thread has finished
[2025-10-12 13:02:33] 2025-10-12 11:02:05,166 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:02:33] 2025-10-12 11:02:06,060 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:02:33] 2025-10-12 11:02:06,923 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:02:33] 2025-10-12 11:02:13,789 | INFO     | job.realtimelogging is not enabled
[2025-10-12 13:02:33] 2025-10-12 11:02:14,795 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:02:33] 2025-10-12 11:02:24,708 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:02:33] 2025-10-12 11:02:26,789 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140211581622080)>', '<ExcThread(monitor, started 140210767632128)>']
[2025-10-12 13:02:33] 2025-10-12 11:02:31,815 | INFO     | all workflow threads have been joined
[2025-10-12 13:02:33] 2025-10-12 11:02:31,815 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:02:33] 2025-10-12 11:02:31,816 | INFO     | traces error code: 0
[2025-10-12 13:02:33] 2025-10-12 11:02:31,816 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:02:33] 2025-10-12 11:02:33,190 | INFO     | PID=3296396 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 13:02:33] 2025-10-12 11:02:33,190 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:02:33] 2025-10-12 11:02:33,190 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:02:33] 2025-10-12 11:02:33,190 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:02:33] 2025-10-12 11:02:33,190 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:02:33] 2025-10-12 11:02:33,190 | INFO     | [monitor] control thread has ended
[2025-10-12 13:02:33] 2025-10-12 11:02:33,268 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:02:33] 2025-10-12 11:02:33,272 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:02:33] 2025-10-12 11:02:33,277 [wrapper] pilotpid: 3296396
[2025-10-12 13:02:33] 2025-10-12 11:02:33,281 [wrapper] Pilot exit status: 0
[2025-10-12 13:02:33] 2025-10-12 11:02:33,293 [wrapper] pandaids: 6837663201
[2025-10-12 13:02:33] 2025-10-12 11:02:33,316 [wrapper] cleanup supervisor_pilot 3316290 3296397
[2025-10-12 13:02:33] 2025-10-12 11:02:33,320 [wrapper] Test setup, not cleaning
[2025-10-12 13:02:33] 2025-10-12 11:02:33,324 [wrapper] apfmon messages muted
[2025-10-12 13:02:33] 2025-10-12 11:02:33,328 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:02:33] 2025-10-12 11:02:33,332 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:02:33]  *** Error codes and diagnostics ***
[2025-10-12 13:02:33]     "exeErrorCode": 0,
[2025-10-12 13:02:33]     "exeErrorDiag": "",
[2025-10-12 13:02:33]     "pilotErrorCode": 0,
[2025-10-12 13:02:33]     "pilotErrorDiag": "",
[2025-10-12 13:02:33]  *** Listing of results directory ***
[2025-10-12 13:02:33] total 418448
[2025-10-12 13:02:33] -rw-r--r-- 1 boinc boinc    557409 Oct 10 16:05 pilot3.tar.gz
[2025-10-12 13:02:33] -rw-r--r-- 1 boinc boinc      5112 Oct 10 16:39 queuedata.json
[2025-10-12 13:02:33] -rwx------ 1 boinc boinc     36292 Oct 10 16:41 runpilot2-wrapper.sh
[2025-10-12 13:02:33] -rw-r--r-- 1 boinc boinc       100 Oct 12 11:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:02:33] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 11:46 run_atlas
[2025-10-12 13:02:33] -rw-r--r-- 1 boinc boinc       105 Oct 12 11:46 job.xml
[2025-10-12 13:02:33] -rw-r--r-- 2 boinc boinc 221563704 Oct 12 11:46 EVNT.46676267._001632.pool.root.1
[2025-10-12 13:02:33] -rw-r--r-- 2 boinc boinc    569678 Oct 12 11:46 input.tar.gz
[2025-10-12 13:02:33] -rw-r--r-- 2 boinc boinc     15120 Oct 12 11:46 start_atlas.sh
[2025-10-12 13:02:33] drwxrwx--x 2 boinc boinc      4096 Oct 12 11:46 shared
[2025-10-12 13:02:33] -rw-r--r-- 1 boinc boinc         0 Oct 12 11:46 boinc_setup_complete
[2025-10-12 13:02:33] -rw-r--r-- 1 boinc boinc      6371 Oct 12 11:46 init_data.xml
[2025-10-12 13:02:33] -rw-r--r-- 1 boinc boinc         0 Oct 12 11:46 boinc_lockfile
[2025-10-12 13:02:33] -rw-r--r-- 1 boinc boinc      2550 Oct 12 11:46 pandaJob.out
[2025-10-12 13:02:33] -rw------- 1 boinc boinc    975536 Oct 12 11:46 agis_schedconf.cvmfs.json
[2025-10-12 13:02:33] -rw------- 1 boinc boinc   1560580 Oct 12 11:46 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:02:33] drwx------ 5 boinc boinc      4096 Oct 12 11:46 pilot3
[2025-10-12 13:02:33] -rw------- 1 boinc boinc 201131853 Oct 12 13:01 HITS.46676269._040258.pool.root.1
[2025-10-12 13:02:33] -rw-r--r-- 1 boinc boinc       529 Oct 12 13:01 boinc_task_state.xml
[2025-10-12 13:02:33] -rw------- 1 boinc boinc        95 Oct 12 13:01 pilot_heartbeat.json
[2025-10-12 13:02:33] -rw------- 1 boinc boinc      1019 Oct 12 13:01 memory_monitor_summary.json
[2025-10-12 13:02:33] -rw------- 1 boinc boinc    279607 Oct 12 13:01 log.46676269._040258.job.log.tgz.1
[2025-10-12 13:02:33] -rw------- 1 boinc boinc      7765 Oct 12 13:02 heartbeat.json
[2025-10-12 13:02:33] -rw-r--r-- 1 boinc boinc        27 Oct 12 13:02 wrapper_checkpoint.txt
[2025-10-12 13:02:33] -rw-r--r-- 1 boinc boinc      8192 Oct 12 13:02 boinc_mmap_file
[2025-10-12 13:02:33] -rw------- 1 boinc boinc       747 Oct 12 13:02 pilotlog.txt
[2025-10-12 13:02:33] -rw------- 1 boinc boinc    671039 Oct 12 13:02 log.46676269._040258.job.log.1
[2025-10-12 13:02:33] -rw------- 1 boinc boinc       357 Oct 12 13:02 output.list
[2025-10-12 13:02:33] -rw-r--r-- 1 boinc boinc       620 Oct 12 13:02 runtime_log
[2025-10-12 13:02:33] -rw------- 1 boinc boinc    972800 Oct 12 13:02 result.tar.gz
[2025-10-12 13:02:33] -rw-r--r-- 1 boinc boinc      8782 Oct 12 13:02 runtime_log.err
[2025-10-12 13:02:33] -rw------- 1 boinc boinc       659 Oct 12 13:02 IgvNDmzTTR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZddNDmMWZPjm.diag
[2025-10-12 13:02:33] -rw-r--r-- 1 boinc boinc     11512 Oct 12 13:02 stderr.txt
[2025-10-12 13:02:33] HITS file was successfully produced:
[2025-10-12 13:02:33] -rw------- 1 boinc boinc 201131853 Oct 12 13:01 shared/HITS.pool.root.1
[2025-10-12 13:02:33]  *** Contents of shared directory: ***
[2025-10-12 13:02:33] total 414328
[2025-10-12 13:02:33] -rw-r--r-- 2 boinc boinc 221563704 Oct 12 11:46 ATLAS.root_0
[2025-10-12 13:02:33] -rw-r--r-- 2 boinc boinc    569678 Oct 12 11:46 input.tar.gz
[2025-10-12 13:02:33] -rw-r--r-- 2 boinc boinc     15120 Oct 12 11:46 start_atlas.sh
[2025-10-12 13:02:33] -rw------- 1 boinc boinc 201131853 Oct 12 13:01 HITS.pool.root.1
[2025-10-12 13:02:33] -rw------- 1 boinc boinc    972800 Oct 12 13:02 result.tar.gz
13:02:35 (3292606): run_atlas exited; CPU time 17065.741664
13:02:35 (3292606): called boinc_finish(0)

</stderr_txt>
]]>

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