Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:12:09 (2161657): wrapper (7.7.26015): starting
11:12:09 (2161657): wrapper: running run_atlas (--nthreads 2)
[2025-10-12 11:12:09] Arguments: --nthreads 2
[2025-10-12 11:12:09] Threads: 2
[2025-10-12 11:12:09] Checking for CVMFS
[2025-10-12 11:12:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:12:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:12:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:12:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:12:09] 2.9.2.0 1214728 4124 62340 151613 3 57 26411066 36864000 0 130560 0 2504822 99.989 137097 771 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 11:12:09] CVMFS is ok
[2025-10-12 11:12:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:12:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:12:09] Further information can be found at the LHC@home message board.
[2025-10-12 11:12:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:12:09] Checking for apptainer binary...
[2025-10-12 11:12:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:12:09] Running /usr/bin/apptainer --version
[2025-10-12 11:12:09] apptainer version 1.4.1-1.1
[2025-10-12 11:12:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:12:09] madmaxA277a
[2025-10-12 11:12:09] apptainer works
[2025-10-12 11:12:09] Set ATHENA_PROC_NUMBER=2
[2025-10-12 11:12:09] Set ATHENA_CORE_NUMBER=2
[2025-10-12 11:12:09] Starting ATLAS job with PandaID=6838773205
[2025-10-12 11:12:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:15:39]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:15:39] 2025-10-12 11:15:10,046 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:15:39] 2025-10-12 11:15:10,046 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:15:39] 2025-10-12 11:15:10,046 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:15:39] 2025-10-12 11:15:10,046 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:15:39] 2025-10-12 11:15:10,046 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:15:39] 2025-10-12 11:15:10,046 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:15:39] 2025-10-12 11:15:10,046 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:15:39] 2025-10-12 11:15:10,046 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:15:39] 2025-10-12 11:15:10,046 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:15:39] 2025-10-12 11:15:10,046 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:15:39] 2025-10-12 11:15:10,046 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:15:39] 2025-10-12 11:15:10,046 | INFO     | job 6838773205 has completed (purged errors)
[2025-10-12 13:15:39] 2025-10-12 11:15:10,046 | INFO     | overall cleanup function is called
[2025-10-12 13:15:39] 2025-10-12 11:15:11,052 | INFO     | --- collectZombieJob: --- 10, [2171773]
[2025-10-12 13:15:39] 2025-10-12 11:15:11,052 | INFO     | zombie collector waiting for pid 2171773
[2025-10-12 13:15:39] 2025-10-12 11:15:11,053 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:15:39] 2025-10-12 11:15:11,053 | INFO     | collected zombie processes
[2025-10-12 13:15:39] 2025-10-12 11:15:11,053 | INFO     | will attempt to kill all subprocesses of pid=2171773
[2025-10-12 13:15:39] 2025-10-12 11:15:11,086 | INFO     | process IDs to be killed: [2171773] (in reverse order)
[2025-10-12 13:15:39] 2025-10-12 11:15:11,105 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:15:39] 2025-10-12 11:15:11,106 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:15:39] 2025-10-12 11:15:11,106 | INFO     | did not find any defunct processes belonging to 2171773
[2025-10-12 13:15:39] 2025-10-12 11:15:11,107 | INFO     | did not find any defunct processes belonging to 2171773
[2025-10-12 13:15:39] 2025-10-12 11:15:11,107 | INFO     | ready for new job
[2025-10-12 13:15:39] 2025-10-12 11:15:11,107 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:15:39] 2025-10-12 11:15:11,108 | INFO     | ***************************************
[2025-10-12 13:15:39] 2025-10-12 11:15:11,108 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:15:39] 2025-10-12 11:15:11,108 | INFO     | ***************************************
[2025-10-12 13:15:39] 2025-10-12 11:15:11,108 | INFO     | 
[2025-10-12 13:15:39] 2025-10-12 11:15:11,108 | INFO     | architecture information:
[2025-10-12 13:15:39] 2025-10-12 11:15:11,108 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:15:39] 2025-10-12 11:15:11,116 | INFO     | cat /etc/os-release:
[2025-10-12 13:15:39] NAME="CentOS Linux"
[2025-10-12 13:15:39] VERSION="7 (Core)"
[2025-10-12 13:15:39] ID="centos"
[2025-10-12 13:15:39] ID_LIKE="rhel fedora"
[2025-10-12 13:15:39] VERSION_ID="7"
[2025-10-12 13:15:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:15:39] ANSI_COLOR="0;31"
[2025-10-12 13:15:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:15:39] HOME_URL="https://www.centos.org/"
[2025-10-12 13:15:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:15:39] 
[2025-10-12 13:15:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:15:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:15:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:15:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:15:39] 
[2025-10-12 13:15:39] 2025-10-12 11:15:11,116 | INFO     | ***************************************
[2025-10-12 13:15:39] 2025-10-12 11:15:11,619 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 13:15:39] 2025-10-12 11:15:11,631 | INFO     | sufficient remaining disk space (492140756992 B)
[2025-10-12 13:15:39] 2025-10-12 11:15:11,631 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:15:39] 2025-10-12 11:15:11,631 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:15:39] 2025-10-12 11:15:11,631 | INFO     | update_server=False
[2025-10-12 13:15:39] 2025-10-12 11:15:11,631 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:15:39] 2025-10-12 11:15:11,631 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 13:15:39] 2025-10-12 11:15:11,632 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:15:39] 2025-10-12 11:15:11,632 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:15:39] 2025-10-12 11:15:11,632 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:15:39] 2025-10-12 11:15:11,846 | INFO     | all data control threads have been joined
[2025-10-12 13:15:39] 2025-10-12 11:15:11,949 | INFO     | all job control threads have been joined
[2025-10-12 13:15:39] 2025-10-12 11:15:12,172 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:15:39] 2025-10-12 11:15:12,173 | INFO     | aborting loop
[2025-10-12 13:15:39] 2025-10-12 11:15:12,637 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:15:39] 2025-10-12 11:15:12,651 | INFO     | all payload control threads have been joined
[2025-10-12 13:15:39] 2025-10-12 11:15:12,687 | INFO     | [job] validate thread has finished
[2025-10-12 13:15:39] 2025-10-12 11:15:12,719 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:15:39] 2025-10-12 11:15:12,782 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:15:39] 2025-10-12 11:15:12,852 | INFO     | [data] control thread has finished
[2025-10-12 13:15:39] 2025-10-12 11:15:12,955 | INFO     | [job] control thread has finished
[2025-10-12 13:15:39] 2025-10-12 11:15:13,010 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:15:39] 2025-10-12 11:15:13,178 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:15:39] 2025-10-12 11:15:13,243 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:15:39] 2025-10-12 11:15:13,484 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:15:39] 2025-10-12 11:15:13,657 | INFO     | [payload] control thread has finished
[2025-10-12 13:15:39] 2025-10-12 11:15:13,789 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:15:39] 2025-10-12 11:15:14,072 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:15:39] 2025-10-12 11:15:14,087 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:15:39] 2025-10-12 11:15:14,593 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:15:39] 2025-10-12 11:15:14,725 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:15:39] 2025-10-12 11:15:15,599 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:15:39] 2025-10-12 11:15:17,492 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:15:39] 2025-10-12 11:15:22,160 | INFO     | job.realtimelogging is not enabled
[2025-10-12 13:15:39] 2025-10-12 11:15:23,166 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:15:39] 2025-10-12 11:15:33,663 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:15:39] 2025-10-12 11:15:34,007 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140525109344064)>', '<ExcThread(monitor, started 140524476425984)>']
[2025-10-12 13:15:39] 2025-10-12 11:15:34,750 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:15:39] 2025-10-12 11:15:34,751 | INFO     | [monitor] control thread has ended
[2025-10-12 13:15:39] 2025-10-12 11:15:39,033 | INFO     | all workflow threads have been joined
[2025-10-12 13:15:39] 2025-10-12 11:15:39,034 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:15:39] 2025-10-12 11:15:39,034 | INFO     | traces error code: 0
[2025-10-12 13:15:39] 2025-10-12 11:15:39,035 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:15:39] 2025-10-12 11:15:39,077 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:15:39] 2025-10-12 11:15:39,079 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:15:39] 2025-10-12 11:15:39,082 [wrapper] pilotpid: 2165362
[2025-10-12 13:15:39] 2025-10-12 11:15:39,084 [wrapper] Pilot exit status: 0
[2025-10-12 13:15:39] 2025-10-12 11:15:39,089 [wrapper] pandaids: 6838773205
[2025-10-12 13:15:39] 2025-10-12 11:15:39,101 [wrapper] cleanup supervisor_pilot 2186167 2165363
[2025-10-12 13:15:39] 2025-10-12 11:15:39,103 [wrapper] Test setup, not cleaning
[2025-10-12 13:15:39] 2025-10-12 11:15:39,105 [wrapper] apfmon messages muted
[2025-10-12 13:15:39] 2025-10-12 11:15:39,107 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:15:39] 2025-10-12 11:15:39,109 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:15:39]  *** Error codes and diagnostics ***
[2025-10-12 13:15:39]     "exeErrorCode": 0,
[2025-10-12 13:15:39]     "exeErrorDiag": "",
[2025-10-12 13:15:39]     "pilotErrorCode": 0,
[2025-10-12 13:15:39]     "pilotErrorDiag": "",
[2025-10-12 13:15:39]  *** Listing of results directory ***
[2025-10-12 13:15:39] total 404852
[2025-10-12 13:15:39] -rw-r--r-- 1 boinc boinc    557409 Oct 11 20:14 pilot3.tar.gz
[2025-10-12 13:15:39] -rw-r--r-- 1 boinc boinc      5112 Oct 11 20:27 queuedata.json
[2025-10-12 13:15:39] -rwx------ 1 boinc boinc     36292 Oct 11 20:28 runpilot2-wrapper.sh
[2025-10-12 13:15:39] -rw-r--r-- 1 boinc boinc       100 Oct 12 11:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:15:39] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 11:12 run_atlas
[2025-10-12 13:15:39] -rw-r--r-- 1 boinc boinc       105 Oct 12 11:12 job.xml
[2025-10-12 13:15:39] -rw-r--r-- 2 boinc boinc 219392088 Oct 12 11:12 EVNT.46676267._002516.pool.root.1
[2025-10-12 13:15:39] -rw-r--r-- 2 boinc boinc    569682 Oct 12 11:12 input.tar.gz
[2025-10-12 13:15:39] -rw-r--r-- 2 boinc boinc     15120 Oct 12 11:12 start_atlas.sh
[2025-10-12 13:15:39] drwxrwx--x 2 boinc boinc      4096 Oct 12 11:12 shared
[2025-10-12 13:15:39] -rw-r--r-- 1 boinc boinc         0 Oct 12 11:12 boinc_setup_complete
[2025-10-12 13:15:39] -rw-r--r-- 1 boinc boinc      6210 Oct 12 11:12 init_data.xml
[2025-10-12 13:15:39] -rw-r--r-- 1 boinc boinc         0 Oct 12 11:12 boinc_lockfile
[2025-10-12 13:15:39] -rw-r--r-- 1 boinc boinc      2550 Oct 12 11:12 pandaJob.out
[2025-10-12 13:15:39] -rw------- 1 boinc boinc    975520 Oct 12 11:12 agis_schedconf.cvmfs.json
[2025-10-12 13:15:39] -rw------- 1 boinc boinc   1560580 Oct 12 11:12 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:15:39] drwx------ 5 boinc boinc      4096 Oct 12 11:12 pilot3
[2025-10-12 13:15:39] -rw------- 1 boinc boinc 188619450 Oct 12 13:14 HITS.46676269._062635.pool.root.1
[2025-10-12 13:15:39] -rw-r--r-- 1 boinc boinc       530 Oct 12 13:14 boinc_task_state.xml
[2025-10-12 13:15:39] -rw------- 1 boinc boinc        95 Oct 12 13:14 pilot_heartbeat.json
[2025-10-12 13:15:39] -rw------- 1 boinc boinc      1020 Oct 12 13:14 memory_monitor_summary.json
[2025-10-12 13:15:39] -rw------- 1 boinc boinc    270160 Oct 12 13:15 log.46676269._062635.job.log.tgz.1
[2025-10-12 13:15:39] -rw------- 1 boinc boinc      7768 Oct 12 13:15 heartbeat.json
[2025-10-12 13:15:39] -rw-r--r-- 1 boinc boinc        27 Oct 12 13:15 wrapper_checkpoint.txt
[2025-10-12 13:15:39] -rw-r--r-- 1 boinc boinc      8192 Oct 12 13:15 boinc_mmap_file
[2025-10-12 13:15:39] -rw------- 1 boinc boinc      4628 Oct 12 13:15 pilotlog.txt
[2025-10-12 13:15:39] -rw------- 1 boinc boinc   1063665 Oct 12 13:15 log.46676269._062635.job.log.1
[2025-10-12 13:15:39] -rw------- 1 boinc boinc       357 Oct 12 13:15 output.list
[2025-10-12 13:15:39] -rw-r--r-- 1 boinc boinc       620 Oct 12 13:15 runtime_log
[2025-10-12 13:15:39] -rw------- 1 boinc boinc   1351680 Oct 12 13:15 result.tar.gz
[2025-10-12 13:15:39] -rw-r--r-- 1 boinc boinc      8802 Oct 12 13:15 runtime_log.err
[2025-10-12 13:15:39] -rw------- 1 boinc boinc       664 Oct 12 13:15 nImKDmvVtR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrFhNDmlv2Eim.diag
[2025-10-12 13:15:39] -rw-r--r-- 1 boinc boinc     11954 Oct 12 13:15 stderr.txt
[2025-10-12 13:15:39] HITS file was successfully produced:
[2025-10-12 13:15:39] -rw------- 1 boinc boinc 188619450 Oct 12 13:14 shared/HITS.pool.root.1
[2025-10-12 13:15:39]  *** Contents of shared directory: ***
[2025-10-12 13:15:39] total 400356
[2025-10-12 13:15:39] -rw-r--r-- 2 boinc boinc 219392088 Oct 12 11:12 ATLAS.root_0
[2025-10-12 13:15:39] -rw-r--r-- 2 boinc boinc    569682 Oct 12 11:12 input.tar.gz
[2025-10-12 13:15:39] -rw-r--r-- 2 boinc boinc     15120 Oct 12 11:12 start_atlas.sh
[2025-10-12 13:15:39] -rw------- 1 boinc boinc 188619450 Oct 12 13:14 HITS.pool.root.1
[2025-10-12 13:15:39] -rw------- 1 boinc boinc   1351680 Oct 12 13:15 result.tar.gz
13:15:41 (2161657): run_atlas exited; CPU time 14281.474599
13:15:41 (2161657): called boinc_finish(0)

</stderr_txt>
]]>

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