Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:38:03 (2496188): wrapper (7.7.26015): starting
21:38:03 (2496188): wrapper: running run_atlas (--nthreads 9)
[2025-10-11 21:38:03] Arguments: --nthreads 9
[2025-10-11 21:38:03] Threads: 9
[2025-10-11 21:38:03] Checking for CVMFS
[2025-10-11 21:38:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 21:38:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 21:38:04] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 21:38:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 21:38:05] 2.13.2.0 2533812 128592 315232 151602 2 399 16937842 32935936 44849 16776704 0 368301865 99.696 277802562 19916 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 21:38:05] CVMFS is ok
[2025-10-11 21:38:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 21:38:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 21:38:05] Further information can be found at the LHC@home message board.
[2025-10-11 21:38:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 21:38:05] Checking for apptainer binary...
[2025-10-11 21:38:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 21:38:05] Running /usr/bin/apptainer --version
[2025-10-11 21:38:05] apptainer version 1.4.3-1.el9
[2025-10-11 21:38:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 21:38:06] c6-12-29-3.aglt2.org
[2025-10-11 21:38:06] apptainer works
[2025-10-11 21:38:06] Set ATHENA_PROC_NUMBER=9
[2025-10-11 21:38:06] Set ATHENA_CORE_NUMBER=9
[2025-10-11 21:38:06] Starting ATLAS job with PandaID=6838849739
[2025-10-11 21:38:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
02:47:47 (3753953): wrapper (7.7.26015): starting
02:47:47 (3753953): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 02:47:47] Arguments: --nthreads 8
[2025-10-12 02:47:47] Threads: 8
[2025-10-12 02:47:47] This job has been restarted, cleaning up previous attempt
[2025-10-12 02:47:48] Checking for CVMFS
[2025-10-12 02:47:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 02:47:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 02:47:49] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 02:47:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 02:47:50] 2.13.2.0 2533812 128901 302236 151611 1 160 19341602 32935937 40969 16776704 0 369708920 99.697 278663850 19901 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 02:47:50] CVMFS is ok
[2025-10-12 02:47:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 02:47:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 02:47:50] Further information can be found at the LHC@home message board.
[2025-10-12 02:47:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 02:47:50] Checking for apptainer binary...
[2025-10-12 02:47:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 02:47:50] Running /usr/bin/apptainer --version
[2025-10-12 02:47:50] apptainer version 1.4.3-1.el9
[2025-10-12 02:47:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 02:47:50] c6-12-29-3.aglt2.org
[2025-10-12 02:47:50] apptainer works
[2025-10-12 02:47:50] Set ATHENA_PROC_NUMBER=8
[2025-10-12 02:47:50] Set ATHENA_CORE_NUMBER=8
[2025-10-12 02:47:51] Starting ATLAS job with PandaID=6838849739
[2025-10-12 02:47:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 08:41:13]  *** The last 200 lines of the pilot log: ***
[2025-10-12 08:41:13] 2025-10-12 12:40:07,684 | INFO     | fitting pss+swap vs Time
[2025-10-12 08:41:13] 2025-10-12 12:40:07,685 | INFO     | sum of square deviations: 12513156050.483946
[2025-10-12 08:41:13] 2025-10-12 12:40:07,752 | INFO     | sum of deviations: 129722812599.95613
[2025-10-12 08:41:13] 2025-10-12 12:40:07,752 | INFO     | mean x: 1760262305.3760934
[2025-10-12 08:41:13] 2025-10-12 12:40:07,752 | INFO     | mean y: 2065596.1166180759
[2025-10-12 08:41:13] 2025-10-12 12:40:07,752 | INFO     | -- intersect: -18246422334.970795
[2025-10-12 08:41:13] 2025-10-12 12:40:07,752 | INFO     | intersect: -18246422334.970795
[2025-10-12 08:41:13] 2025-10-12 12:40:07,753 | INFO     | chi2: 4.480221176869688
[2025-10-12 08:41:13] 2025-10-12 12:40:07,754 | INFO     | sum of square deviations: 11973878442.781122
[2025-10-12 08:41:13] 2025-10-12 12:40:07,788 | INFO     | sum of deviations: 165130753361.0533
[2025-10-12 08:41:13] 2025-10-12 12:40:07,789 | INFO     | mean x: 1760262152.8757396
[2025-10-12 08:41:13] 2025-10-12 12:40:07,789 | INFO     | mean y: 2075518.7869822485
[2025-10-12 08:41:13] 2025-10-12 12:40:07,789 | INFO     | -- intersect: -24273552199.194675
[2025-10-12 08:41:13] 2025-10-12 12:40:07,789 | INFO     | intersect: -24273552199.194675
[2025-10-12 08:41:13] 2025-10-12 12:40:07,790 | INFO     | chi2: 3.0448388007912306
[2025-10-12 08:41:13] 2025-10-12 12:40:07,809 | INFO     | current chi2=3.0448388007912306 (change=32.03820345944066 %)
[2025-10-12 08:41:13] 2025-10-12 12:40:07,810 | INFO     | sum of square deviations: 11450280823.567612
[2025-10-12 08:41:13] 2025-10-12 12:40:07,825 | INFO     | sum of deviations: 161654355061.42346
[2025-10-12 08:41:13] 2025-10-12 12:40:07,826 | INFO     | mean x: 1760262000.3693693
[2025-10-12 08:41:13] 2025-10-12 12:40:07,826 | INFO     | mean y: 2074503.8258258258
[2025-10-12 08:41:13] 2025-10-12 12:40:07,826 | INFO     | -- intersect: -24849195329.063904
[2025-10-12 08:41:13] 2025-10-12 12:40:07,826 | INFO     | intersect: -24849195329.063904
[2025-10-12 08:41:13] 2025-10-12 12:40:07,827 | INFO     | chi2: 3.04272663582386
[2025-10-12 08:41:13] 2025-10-12 12:40:07,827 | INFO     | current chi2=3.04272663582386 (change=0.0693686958673116 %)
[2025-10-12 08:41:13] 2025-10-12 12:40:07,827 | INFO     | right removable region: 332
[2025-10-12 08:41:13] 2025-10-12 12:40:07,827 | INFO     | sum of square deviations: 11973862156.026592
[2025-10-12 08:41:13] 2025-10-12 12:40:07,846 | INFO     | sum of deviations: 58339550710.52659
[2025-10-12 08:41:13] 2025-10-12 12:40:07,847 | INFO     | mean x: 1760262457.878698
[2025-10-12 08:41:13] 2025-10-12 12:40:07,847 | INFO     | mean y: 2085730.378698225
[2025-10-12 08:41:13] 2025-10-12 12:40:07,847 | INFO     | -- intersect: -8574338449.814814
[2025-10-12 08:41:13] 2025-10-12 12:40:07,847 | INFO     | intersect: -8574338449.814814
[2025-10-12 08:41:13] 2025-10-12 12:40:07,848 | INFO     | chi2: 2.083215165156604
[2025-10-12 08:41:13] 2025-10-12 12:40:07,848 | INFO     | current chi2=2.083215165156604 (change=53.501957092838495 %)
[2025-10-12 08:41:13] 2025-10-12 12:40:07,849 | INFO     | sum of square deviations: 11450289608.564587
[2025-10-12 08:41:13] 2025-10-12 12:40:07,868 | INFO     | sum of deviations: 26504226841.297237
[2025-10-12 08:41:13] 2025-10-12 12:40:07,868 | INFO     | mean x: 1760262610.3813813
[2025-10-12 08:41:13] 2025-10-12 12:40:07,868 | INFO     | mean y: 2094979.9189189188
[2025-10-12 08:41:13] 2025-10-12 12:40:07,868 | INFO     | -- intersect: -4072422007.9226456
[2025-10-12 08:41:13] 2025-10-12 12:40:07,869 | INFO     | intersect: -4072422007.9226456
[2025-10-12 08:41:13] 2025-10-12 12:40:07,892 | INFO     | chi2: 1.6493262725603741
[2025-10-12 08:41:13] 2025-10-12 12:40:07,893 | INFO     | current chi2=1.6493262725603741 (change=20.827848215266453 %)
[2025-10-12 08:41:13] 2025-10-12 12:40:07,893 | INFO     | left removable region: 20
[2025-10-12 08:41:13] 2025-10-12 12:40:07,893 | INFO     | sum of square deviations: 9417798211.612225
[2025-10-12 08:41:13] 2025-10-12 12:40:07,901 | INFO     | sum of deviations: 46319634490.65065
[2025-10-12 08:41:13] 2025-10-12 12:40:07,902 | INFO     | mean x: 1760262579.8685896
[2025-10-12 08:41:13] 2025-10-12 12:40:07,902 | INFO     | mean y: 2109141.137820513
[2025-10-12 08:41:13] 2025-10-12 12:40:07,902 | INFO     | -- intersect: -8655404799.49321
[2025-10-12 08:41:13] 2025-10-12 12:40:07,902 | INFO     | intersect: -8655404799.49321
[2025-10-12 08:41:13] 2025-10-12 12:40:07,903 | INFO     | chi2: 0.13013909936272794
[2025-10-12 08:41:13] 2025-10-12 12:40:07,903 | INFO     | -- intersect: -8655404799.49321
[2025-10-12 08:41:13] 2025-10-12 12:40:07,925 | INFO     | current memory leak: 4.92 B/s (using 312 data points, chi2=0.13)
[2025-10-12 08:41:13] 2025-10-12 12:40:07,926 | INFO     | could have reported an average CPU frequency of 2591 MHz (15 samples)
[2025-10-12 08:41:13] 2025-10-12 12:40:07,926 | INFO     | ..............................
[2025-10-12 08:41:13] 2025-10-12 12:40:07,926 | INFO     | . Timing measurements:
[2025-10-12 08:41:13] 2025-10-12 12:40:07,927 | INFO     | . get job = 0 s
[2025-10-12 08:41:13] 2025-10-12 12:40:07,927 | INFO     | . initial setup = 3 s
[2025-10-12 08:41:13] 2025-10-12 12:40:07,927 | INFO     | . payload setup = 40 s
[2025-10-12 08:41:13] 2025-10-12 12:40:07,927 | INFO     | . stage-in = 0 s
[2025-10-12 08:41:13] 2025-10-12 12:40:07,927 | INFO     | . payload execution = 20916 s
[2025-10-12 08:41:13] 2025-10-12 12:40:07,927 | INFO     | . stage-out = 6 s
[2025-10-12 08:41:13] 2025-10-12 12:40:07,927 | INFO     | . log creation = 1 s
[2025-10-12 08:41:13] 2025-10-12 12:40:07,927 | INFO     | ..............................
[2025-10-12 08:41:13] 2025-10-12 12:40:08,563 | INFO     | time since job start (21079s) is within the limit (172800.0s)
[2025-10-12 08:41:13] 2025-10-12 12:40:08,587 | INFO     | 
[2025-10-12 08:41:13] 2025-10-12 12:40:08,587 | INFO     | job summary report
[2025-10-12 08:41:13] 2025-10-12 12:40:08,587 | INFO     | --------------------------------------------------
[2025-10-12 08:41:13] 2025-10-12 12:40:08,588 | INFO     | PanDA job id: 6838849739
[2025-10-12 08:41:13] 2025-10-12 12:40:08,588 | INFO     | task id: 46676269
[2025-10-12 08:41:13] 2025-10-12 12:40:08,588 | INFO     | errors: (none)
[2025-10-12 08:41:13] 2025-10-12 12:40:08,588 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 08:41:13] 2025-10-12 12:40:08,588 | INFO     | pilot state: finished 
[2025-10-12 08:41:13] 2025-10-12 12:40:08,588 | INFO     | transexitcode: 0
[2025-10-12 08:41:13] 2025-10-12 12:40:08,588 | INFO     | exeerrorcode: 0
[2025-10-12 08:41:13] 2025-10-12 12:40:08,588 | INFO     | exeerrordiag: 
[2025-10-12 08:41:13] 2025-10-12 12:40:08,588 | INFO     | exitcode: 0
[2025-10-12 08:41:13] 2025-10-12 12:40:08,588 | INFO     | exitmsg: OK
[2025-10-12 08:41:13] 2025-10-12 12:40:08,588 | INFO     | cpuconsumptiontime: 46793 s
[2025-10-12 08:41:13] 2025-10-12 12:40:08,588 | INFO     | nevents: 400
[2025-10-12 08:41:13] 2025-10-12 12:40:08,588 | INFO     | neventsw: 0
[2025-10-12 08:41:13] 2025-10-12 12:40:08,588 | INFO     | pid: 3834547
[2025-10-12 08:41:13] 2025-10-12 12:40:08,588 | INFO     | pgrp: 3834547
[2025-10-12 08:41:13] 2025-10-12 12:40:08,588 | INFO     | corecount: 8
[2025-10-12 08:41:13] 2025-10-12 12:40:08,589 | INFO     | event service: False
[2025-10-12 08:41:13] 2025-10-12 12:40:08,589 | INFO     | sizes: {0: 2348630, 1: 2348686, 2: 2348714, 3: 2348742, 4: 2348969, 15: 2348969, 26: 2349125, 29: 2349415, 37: 2349443, 20962: 2382726, 20963: 2382725, 20972: 2392
[2025-10-12 08:41:13] 2025-10-12 12:40:08,589 | INFO     | --------------------------------------------------
[2025-10-12 08:41:13] 2025-10-12 12:40:08,589 | INFO     | 
[2025-10-12 08:41:13] 2025-10-12 12:40:08,589 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 08:41:13] 2025-10-12 12:40:08,656 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 08:41:13] 2025-10-12 12:40:08,657 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 08:41:13] 2025-10-12 12:40:08,657 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 08:41:13] 2025-10-12 12:40:08,657 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 08:41:13] 2025-10-12 12:40:08,657 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 08:41:13] 2025-10-12 12:40:08,657 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 08:41:13] 2025-10-12 12:40:08,657 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 08:41:13] 2025-10-12 12:40:08,657 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 08:41:13] 2025-10-12 12:40:08,657 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 08:41:13] 2025-10-12 12:40:08,658 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 08:41:13] 2025-10-12 12:40:08,658 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 08:41:13] 2025-10-12 12:40:08,658 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 08:41:13] 2025-10-12 12:40:08,658 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 08:41:13] 2025-10-12 12:40:08,658 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 08:41:13] 2025-10-12 12:40:08,658 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 08:41:13] 2025-10-12 12:40:08,658 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 08:41:13] 2025-10-12 12:40:08,658 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 08:41:13] 2025-10-12 12:40:08,658 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 08:41:13] 2025-10-12 12:40:08,659 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 08:41:13] 2025-10-12 12:40:08,659 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 08:41:13] 2025-10-12 12:40:08,659 | INFO     | job 6838849739 has completed (purged errors)
[2025-10-12 08:41:13] 2025-10-12 12:40:08,659 | INFO     | overall cleanup function is called
[2025-10-12 08:41:13] 2025-10-12 12:40:09,678 | INFO     | --- collectZombieJob: --- 10, [3834547]
[2025-10-12 08:41:13] 2025-10-12 12:40:09,678 | INFO     | zombie collector waiting for pid 3834547
[2025-10-12 08:41:13] 2025-10-12 12:40:09,679 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 08:41:13] 2025-10-12 12:40:09,679 | INFO     | collected zombie processes
[2025-10-12 08:41:13] 2025-10-12 12:40:09,679 | INFO     | will attempt to kill all subprocesses of pid=3834547
[2025-10-12 08:41:13] 2025-10-12 12:40:11,307 | INFO     | process IDs to be killed: [3834547] (in reverse order)
[2025-10-12 08:41:13] 2025-10-12 12:40:12,284 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 08:41:13] 2025-10-12 12:40:12,285 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 08:41:13] 2025-10-12 12:40:12,329 | INFO     | did not find any defunct processes belonging to 3834547
[2025-10-12 08:41:13] 2025-10-12 12:40:12,456 | INFO     | did not find any defunct processes belonging to 3834547
[2025-10-12 08:41:13] 2025-10-12 12:40:12,456 | INFO     | ready for new job
[2025-10-12 08:41:13] 2025-10-12 12:40:12,457 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 08:41:13] 2025-10-12 12:40:12,484 | INFO     | ***************************************
[2025-10-12 08:41:13] 2025-10-12 12:40:12,487 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 08:41:13] 2025-10-12 12:40:12,487 | INFO     | ***************************************
[2025-10-12 08:41:13] 2025-10-12 12:40:12,487 | INFO     | 
[2025-10-12 08:41:13] 2025-10-12 12:40:12,510 | INFO     | architecture information:
[2025-10-12 08:41:13] 2025-10-12 12:40:12,536 | INFO     | executing command: cat /etc/os-release
[2025-10-12 08:41:13] 2025-10-12 12:40:12,767 | INFO     | cat /etc/os-release:
[2025-10-12 08:41:13] NAME="CentOS Linux"
[2025-10-12 08:41:13] VERSION="7 (Core)"
[2025-10-12 08:41:13] ID="centos"
[2025-10-12 08:41:13] ID_LIKE="rhel fedora"
[2025-10-12 08:41:13] VERSION_ID="7"
[2025-10-12 08:41:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 08:41:13] ANSI_COLOR="0;31"
[2025-10-12 08:41:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 08:41:13] HOME_URL="https://www.centos.org/"
[2025-10-12 08:41:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 08:41:13] 
[2025-10-12 08:41:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 08:41:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 08:41:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 08:41:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 08:41:13] 
[2025-10-12 08:41:13] 2025-10-12 12:40:12,768 | INFO     | ***************************************
[2025-10-12 08:41:13] 2025-10-12 12:40:13,271 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 08:41:13] 2025-10-12 12:40:13,416 | INFO     | sufficient remaining disk space (94010081280 B)
[2025-10-12 08:41:13] 2025-10-12 12:40:13,416 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 08:41:13] 2025-10-12 12:40:13,416 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 08:41:13] 2025-10-12 12:40:13,416 | INFO     | update_server=False
[2025-10-12 08:41:13] 2025-10-12 12:40:13,416 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 08:41:13] 2025-10-12 12:40:13,417 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 08:41:13] 2025-10-12 12:40:13,496 | INFO     | all data control threads have been joined
[2025-10-12 08:41:13] 2025-10-12 12:40:13,541 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 08:41:13] 2025-10-12 12:40:13,541 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 08:41:13] 2025-10-12 12:40:13,541 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 08:41:13] 2025-10-12 12:40:13,542 | INFO     | will abort loop
[2025-10-12 08:41:13] 2025-10-12 12:40:13,605 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 08:41:13] 2025-10-12 12:40:14,133 | INFO     | all job control threads have been joined
[2025-10-12 08:41:13] 2025-10-12 12:40:14,424 | INFO     | [job] retrieve thread has finished
[2025-10-12 08:41:13] 2025-10-12 12:40:14,516 | INFO     | [data] control thread has finished
[2025-10-12 08:41:13] 2025-10-12 12:40:14,541 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 08:41:13] 2025-10-12 12:40:14,542 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 08:41:13] 2025-10-12 12:40:14,547 | INFO     | [job] job monitor thread has finished
[2025-10-12 08:41:13] 2025-10-12 12:40:14,555 | INFO     | all payload control threads have been joined
[2025-10-12 08:41:13] 2025-10-12 12:40:14,610 | INFO     | [data] copytool_in thread has finished
[2025-10-12 08:41:13] 2025-10-12 12:40:14,611 | INFO     | [job] validate thread has finished
[2025-10-12 08:41:13] 2025-10-12 12:40:14,619 | INFO     | [job] queue monitor thread has finished
[2025-10-12 08:41:13] 2025-10-12 12:40:15,102 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 08:41:13] 2025-10-12 12:40:15,145 | INFO     | [job] control thread has finished
[2025-10-12 08:41:13] 2025-10-12 12:40:15,219 | INFO     | [payload] validate_post thread has finished
[2025-10-12 08:41:13] 2025-10-12 12:40:15,373 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 08:41:13] 2025-10-12 12:40:15,426 | INFO     | [data] copytool_out thread has finished
[2025-10-12 08:41:13] 2025-10-12 12:40:15,564 | INFO     | [payload] control thread has finished
[2025-10-12 08:41:13] 2025-10-12 12:40:15,611 | INFO     | [payload] failed_post thread has finished
[2025-10-12 08:41:13] 2025-10-12 12:40:16,333 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 08:41:13] 2025-10-12 12:40:20,342 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 08:41:13] 2025-10-12 12:40:26,711 | INFO     | [monitor] cgroup control has ended
[2025-10-12 08:41:13] 2025-10-12 12:40:28,775 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140085404436288)>', '<ExcThread(monitor, started 140084921759488)>']
[2025-10-12 08:41:13] 2025-10-12 12:40:33,801 | INFO     | all workflow threads have been joined
[2025-10-12 08:41:13] 2025-10-12 12:40:33,801 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 08:41:13] 2025-10-12 12:40:33,802 | INFO     | traces error code: 0
[2025-10-12 08:41:13] 2025-10-12 12:40:33,802 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 08:41:13] 2025-10-12 12:40:45,221 | INFO     | PID=3776612 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 08:41:13] 2025-10-12 12:40:45,221 | INFO     | .. there are 58 such processes running
[2025-10-12 08:41:13] 2025-10-12 12:40:45,223 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 08:41:13] 2025-10-12 12:40:45,223 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 08:41:13] 2025-10-12 12:40:45,223 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 08:41:13] 2025-10-12 12:40:45,223 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 08:41:13] 2025-10-12 12:40:45,223 | INFO     | [monitor] control thread has ended
[2025-10-12 08:41:13] 2025-10-12 12:40:45,764 [wrapper] ==== pilot stdout END ====
[2025-10-12 08:41:13] 2025-10-12 12:40:45,786 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 08:41:13] 2025-10-12 12:40:45,789 [wrapper] pilotpid: 3776612
[2025-10-12 08:41:13] 2025-10-12 12:40:45,792 [wrapper] Pilot exit status: 0
[2025-10-12 08:41:13] 2025-10-12 12:40:45,915 [wrapper] pandaids: 6838849739 6838849739
[2025-10-12 08:41:13] 2025-10-12 12:40:46,171 [wrapper] cleanup supervisor_pilot 1183021 3776613
[2025-10-12 08:41:13] 2025-10-12 12:40:46,202 [wrapper] Test setup, not cleaning
[2025-10-12 08:41:13] 2025-10-12 12:40:46,240 [wrapper] apfmon messages muted
[2025-10-12 08:41:13] 2025-10-12 12:40:46,285 [wrapper] ==== wrapper stdout END ====
[2025-10-12 08:41:13] 2025-10-12 12:40:46,313 [wrapper] ==== wrapper stderr END ====
[2025-10-12 08:41:13]  *** Error codes and diagnostics ***
[2025-10-12 08:41:13]     "exeErrorCode": 0,
[2025-10-12 08:41:13]     "exeErrorDiag": "",
[2025-10-12 08:41:13]     "pilotErrorCode": 0,
[2025-10-12 08:41:13]     "pilotErrorDiag": "",
[2025-10-12 08:41:13]  *** Listing of results directory ***
[2025-10-12 08:41:13] total 624640
[2025-10-12 08:41:13] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-12 08:41:13] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 14:41 pilot3.tar.gz
[2025-10-12 08:41:13] -rwx------. 1 boincer umatlas     36292 Oct 11 14:45 runpilot2-wrapper.sh
[2025-10-12 08:41:13] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 14:45 queuedata.json
[2025-10-12 08:41:13] -rw-r--r--. 1 boincer umatlas       100 Oct 11 21:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 08:41:13] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 21:38 run_atlas
[2025-10-12 08:41:13] -rw-r--r--. 1 boincer umatlas       105 Oct 11 21:38 job.xml
[2025-10-12 08:41:13] -rw-r--r--. 3 boincer umatlas 221076098 Oct 11 21:38 EVNT.46676267._002530.pool.root.1
[2025-10-12 08:41:13] -rw-r--r--. 3 boincer umatlas 221076098 Oct 11 21:38 ATLAS.root_0
[2025-10-12 08:41:13] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 21:38 start_atlas.sh
[2025-10-12 08:41:13] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 21:38 shared
[2025-10-12 08:41:13] -rw-r--r--. 2 boincer umatlas    569679 Oct 11 21:38 input.tar.gz
[2025-10-12 08:41:13] -rw-r--r--. 1 boincer umatlas         0 Oct 11 21:38 boinc_lockfile
[2025-10-12 08:41:13] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 02:47 pandaJob.out
[2025-10-12 08:41:13] -rw-------. 1 boincer umatlas    975528 Oct 12 02:48 agis_schedconf.cvmfs.json
[2025-10-12 08:41:13] -rw-------. 1 boincer umatlas 187853021 Oct 12 08:37 HITS.46676269._063000.pool.root.1
[2025-10-12 08:41:13] -rw-r--r--. 1 boincer umatlas       531 Oct 12 08:37 boinc_task_state.xml
[2025-10-12 08:41:13] -rw-r--r--. 1 boincer umatlas      6860 Oct 12 08:38 init_data.xml
[2025-10-12 08:41:13] -rw-------. 1 boincer umatlas      1054 Oct 12 08:39 memory_monitor_summary.json
[2025-10-12 08:41:13] -rw-------. 1 boincer umatlas   1560580 Oct 12 08:39 agis_ddmendpoints.agis.ALL.json
[2025-10-12 08:41:13] -rw-------. 1 boincer umatlas    534304 Oct 12 08:39 log.46676269._063000.job.log.tgz.1
[2025-10-12 08:41:13] -rw-------. 1 boincer umatlas      7856 Oct 12 08:40 heartbeat.json
[2025-10-12 08:41:13] -rw-------. 1 boincer umatlas        96 Oct 12 08:40 pilot_heartbeat.json
[2025-10-12 08:41:13] -rw-------. 1 boincer umatlas       823 Oct 12 08:40 pilotlog.txt
[2025-10-12 08:41:13] -rw-------. 1 boincer umatlas   2325634 Oct 12 08:40 log.46676269._063000.job.log.1
[2025-10-12 08:41:13] -rw-------. 1 boincer umatlas       357 Oct 12 08:40 output.list
[2025-10-12 08:41:13] -rw-r--r--. 1 boincer umatlas       620 Oct 12 08:40 runtime_log
[2025-10-12 08:41:13] -rw-------. 1 boincer umatlas   2877440 Oct 12 08:40 result.tar.gz
[2025-10-12 08:41:13] -rw-r--r--. 1 boincer umatlas      8799 Oct 12 08:40 runtime_log.err
[2025-10-12 08:41:13] -rw-------. 1 boincer umatlas       785 Oct 12 08:40 JCuKDm5ltR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwIhNDm0M6j1n.diag
[2025-10-12 08:41:13] -rw-r--r--. 1 boincer umatlas        28 Oct 12 08:41 wrapper_checkpoint.txt
[2025-10-12 08:41:13] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 08:41 boinc_mmap_file
[2025-10-12 08:41:13] -rw-r--r--. 1 boincer umatlas     23260 Oct 12 08:41 stderr.txt
[2025-10-12 08:41:13] HITS file was successfully produced:
[2025-10-12 08:41:13] -rw-------. 1 boincer umatlas 187853021 Oct 12 08:37 shared/HITS.pool.root.1
[2025-10-12 08:41:13]  *** Contents of shared directory: ***
[2025-10-12 08:41:13] total 402744
[2025-10-12 08:41:13] -rw-r--r--. 3 boincer umatlas 221076098 Oct 11 21:38 ATLAS.root_0
[2025-10-12 08:41:13] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 21:38 start_atlas.sh
[2025-10-12 08:41:13] -rw-r--r--. 2 boincer umatlas    569679 Oct 11 21:38 input.tar.gz
[2025-10-12 08:41:13] -rw-------. 1 boincer umatlas 187853021 Oct 12 08:37 HITS.pool.root.1
[2025-10-12 08:41:13] -rw-------. 1 boincer umatlas   2877440 Oct 12 08:40 result.tar.gz
08:41:14 (3753953): run_atlas exited; CPU time 47990.071968
08:41:14 (3753953): called boinc_finish(0)

</stderr_txt>
]]>

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