Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
16:46:32 (1583122): wrapper (7.7.26015): starting
16:46:32 (1583122): wrapper: running run_atlas (--nthreads 4)
[2025-10-11 16:46:32] Arguments: --nthreads 4
[2025-10-11 16:46:32] Threads: 4
[2025-10-11 16:46:32] Checking for CVMFS
[2025-10-11 16:46:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 16:46:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 16:46:33] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 16:46:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 16:46:33] 2.13.2.0 1473443 130 47088 151600 1 18 3243738 4096001 923 130560 0 189233 99.989 6751 989 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-11 16:46:33] CVMFS is ok
[2025-10-11 16:46:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 16:46:33] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-11 16:46:33] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-11 16:46:33] Further information can be found at the LHC@home message board.
[2025-10-11 16:46:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 16:46:33] Checking for apptainer binary...
[2025-10-11 16:46:33] apptainer is not installed, using version from CVMFS
[2025-10-11 16:46:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 16:46:33] WALKTOTHESUNMINT
[2025-10-11 16:46:33] apptainer works
[2025-10-11 16:46:33] Set ATHENA_PROC_NUMBER=4
[2025-10-11 16:46:33] Set ATHENA_CORE_NUMBER=4
[2025-10-11 16:46:33] Starting ATLAS job with PandaID=6838988522
[2025-10-11 16:46:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 22:13:09]  *** The last 200 lines of the pilot log: ***
[2025-10-11 22:13:09]  protocol_id=None
[2025-10-11 22:13:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-11 22:13:09]  replicas=None
[2025-10-11 22:13:09]  scope=mc23_13p6TeV
[2025-10-11 22:13:09]  status=None
[2025-10-11 22:13:09]  status_code=0
[2025-10-11 22:13:09]  storage_token=
[2025-10-11 22:13:09]  surl=/var/lib/boinc/slots/3/PanDA_Pilot-6838988522/log.46676269._064954.job.log.tgz.1
[2025-10-11 22:13:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ca/02/log.46676269._064954.job.log.tgz.1
[2025-10-11 22:13:09]  workdir=None
[2025-10-11 22:13:09] ]
[2025-10-11 22:13:09] 2025-10-12 01:04:12,882 | INFO     | transferring file log.46676269._064954.job.log.tgz.1 from /var/lib/boinc/slots/3/PanDA_Pilot-6838988522/log.46676269._064954.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-11 22:13:09] 2025-10-12 01:04:12,882 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/3/PanDA_Pilot-6838988522/log.46676269._064954.job.log.tgz.1 /var/lib/boinc/slots/3/log.46676269._064954.job
[2025-10-11 22:13:09] 2025-10-12 01:04:12,892 | INFO     | adding to output.list: log.46676269._064954.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ca/02/log.46676269._064954.job.log.tg
[2025-10-11 22:13:09] 2025-10-12 01:04:12,893 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 22:13:09] 2025-10-12 01:04:12,893 | INFO     | summary of transferred files:
[2025-10-11 22:13:09] 2025-10-12 01:04:12,893 | INFO     |  -- lfn=log.46676269._064954.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 22:13:09] 2025-10-12 01:04:12,893 | INFO     | stage-out finished correctly
[2025-10-11 22:13:09] 2025-10-12 01:04:13,083 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 22:13:09] 2025-10-12 01:04:14,273 | WARNING  | process 1593432 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 22:13:09] 2025-10-12 01:04:14,273 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6838988522/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 22:13:09] 2025-10-12 01:04:14,338 | INFO     | number of running child processes to parent process 1593432: 1
[2025-10-11 22:13:09] 2025-10-12 01:04:14,338 | INFO     | maximum number of monitored processes: 6
[2025-10-11 22:13:09] 2025-10-12 01:04:14,677 | INFO     | time since job start (4654s) is within the limit (172800.0s)
[2025-10-11 22:13:09] 2025-10-12 01:04:16,125 | INFO     | job 6838988522 has state=finished
[2025-10-11 22:13:09] 2025-10-12 01:04:16,125 | INFO     | preparing for final server update for job 6838988522 in state='finished'
[2025-10-11 22:13:09] 2025-10-12 01:04:16,126 | INFO     | this job has now completed (state=finished)
[2025-10-11 22:13:09] 2025-10-12 01:04:16,126 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 22:13:09] 2025-10-12 01:04:16,126 | INFO     | log transfer has been attempted: DONE
[2025-10-11 22:13:09] 2025-10-12 01:04:16,126 | INFO     | job 6838988522 has finished - writing final server update
[2025-10-11 22:13:09] 2025-10-12 01:04:16,126 | INFO     | total number of processed events: 400 (read)
[2025-10-11 22:13:09] 2025-10-12 01:04:16,127 | INFO     | executing command: lscpu
[2025-10-11 22:13:09] 2025-10-12 01:04:16,143 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 22:13:09] 2025-10-12 01:04:16,682 | INFO     | time since job start (4656s) is within the limit (172800.0s)
[2025-10-11 22:13:09] 2025-10-12 01:04:16,841 | INFO     | monitor loop #356: job 0:6838988522 is in state 'finished'
[2025-10-11 22:13:09] 2025-10-12 01:04:16,842 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 22:13:09] 2025-10-12 01:04:18,687 | INFO     | time since job start (4658s) is within the limit (172800.0s)
[2025-10-11 22:13:09] 2025-10-12 01:04:19,032 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 22:13:09] 2025-10-12 01:04:19,033 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4599.9541874999995
[2025-10-11 22:13:09] 2025-10-12 01:04:19,034 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6838988522/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 22:13:09] 2025-10-12 01:04:19,035 | INFO     | extracted standard info from prmon json
[2025-10-11 22:13:09] 2025-10-12 01:04:19,035 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 22:13:09] 2025-10-12 01:04:19,035 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 22:13:09] 2025-10-12 01:04:19,035 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 22:13:09] 2025-10-12 01:04:19,035 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 22:13:09] 2025-10-12 01:04:19,036 | INFO     | fitting pss+swap vs Time
[2025-10-11 22:13:09] 2025-10-12 01:04:19,036 | INFO     | sum of square deviations: 101843770.0
[2025-10-11 22:13:09] 2025-10-12 01:04:19,036 | INFO     | sum of deviations: -12163267630.0
[2025-10-11 22:13:09] 2025-10-12 01:04:19,036 | INFO     | mean x: 1760228796.0
[2025-10-11 22:13:09] 2025-10-12 01:04:19,036 | INFO     | mean y: 2491514.15942029
[2025-10-11 22:13:09] 2025-10-12 01:04:19,036 | INFO     | -- intersect: 210227760431.25345
[2025-10-11 22:13:09] 2025-10-12 01:04:19,036 | INFO     | intersect: 210227760431.25345
[2025-10-11 22:13:09] 2025-10-12 01:04:19,036 | INFO     | chi2: 0.14296714857336762
[2025-10-11 22:13:09] 2025-10-12 01:04:19,036 | INFO     | -- intersect: 210227760431.25345
[2025-10-11 22:13:09] 2025-10-12 01:04:19,036 | INFO     | current memory leak: -119.43 B/s (using 69 data points, chi2=0.14)
[2025-10-11 22:13:09] 2025-10-12 01:04:19,037 | INFO     | could have reported an average CPU frequency of 4602 MHz (6 samples)
[2025-10-11 22:13:09] 2025-10-12 01:04:19,037 | INFO     | ..............................
[2025-10-11 22:13:09] 2025-10-12 01:04:19,037 | INFO     | . Timing measurements:
[2025-10-11 22:13:09] 2025-10-12 01:04:19,037 | INFO     | . get job = 0 s
[2025-10-11 22:13:09] 2025-10-12 01:04:19,037 | INFO     | . initial setup = 2 s
[2025-10-11 22:13:09] 2025-10-12 01:04:19,037 | INFO     | . payload setup = 2 s
[2025-10-11 22:13:09] 2025-10-12 01:04:19,037 | INFO     | . stage-in = 0 s
[2025-10-11 22:13:09] 2025-10-12 01:04:19,037 | INFO     | . payload execution = 4633 s
[2025-10-11 22:13:09] 2025-10-12 01:04:19,037 | INFO     | . stage-out = 0 s
[2025-10-11 22:13:09] 2025-10-12 01:04:19,037 | INFO     | . log creation = 0 s
[2025-10-11 22:13:09] 2025-10-12 01:04:19,037 | INFO     | ..............................
[2025-10-11 22:13:09] 2025-10-12 01:04:19,075 | INFO     | 
[2025-10-11 22:13:09] 2025-10-12 01:04:19,075 | INFO     | job summary report
[2025-10-11 22:13:09] 2025-10-12 01:04:19,075 | INFO     | --------------------------------------------------
[2025-10-11 22:13:09] 2025-10-12 01:04:19,075 | INFO     | PanDA job id: 6838988522
[2025-10-11 22:13:09] 2025-10-12 01:04:19,075 | INFO     | task id: 46676269
[2025-10-11 22:13:09] 2025-10-12 01:04:19,075 | INFO     | errors: (none)
[2025-10-11 22:13:09] 2025-10-12 01:04:19,075 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 22:13:09] 2025-10-12 01:04:19,075 | INFO     | pilot state: finished 
[2025-10-11 22:13:09] 2025-10-12 01:04:19,075 | INFO     | transexitcode: 0
[2025-10-11 22:13:09] 2025-10-12 01:04:19,075 | INFO     | exeerrorcode: 0
[2025-10-11 22:13:09] 2025-10-12 01:04:19,075 | INFO     | exeerrordiag: 
[2025-10-11 22:13:09] 2025-10-12 01:04:19,075 | INFO     | exitcode: 0
[2025-10-11 22:13:09] 2025-10-12 01:04:19,075 | INFO     | exitmsg: OK
[2025-10-11 22:13:09] 2025-10-12 01:04:19,075 | INFO     | cpuconsumptiontime: 17827 s
[2025-10-11 22:13:09] 2025-10-12 01:04:19,075 | INFO     | nevents: 400
[2025-10-11 22:13:09] 2025-10-12 01:04:19,075 | INFO     | neventsw: 0
[2025-10-11 22:13:09] 2025-10-12 01:04:19,075 | INFO     | pid: 1593432
[2025-10-11 22:13:09] 2025-10-12 01:04:19,075 | INFO     | pgrp: 1593432
[2025-10-11 22:13:09] 2025-10-12 01:04:19,075 | INFO     | corecount: 4
[2025-10-11 22:13:09] 2025-10-12 01:04:19,076 | INFO     | event service: False
[2025-10-11 22:13:09] 2025-10-12 01:04:19,076 | INFO     | sizes: {0: 2348571, 1: 2348770, 2: 2349032, 11: 2349060, 4639: 2375337, 4640: 2384519, 4646: 2384657}
[2025-10-11 22:13:09] 2025-10-12 01:04:19,076 | INFO     | --------------------------------------------------
[2025-10-11 22:13:09] 2025-10-12 01:04:19,076 | INFO     | 
[2025-10-11 22:13:09] 2025-10-12 01:04:19,076 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-10-11 22:13:09] 2025-10-12 01:04:19,088 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 22:13:09] 2025-10-12 01:04:19,088 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 22:13:09] 2025-10-12 01:04:19,088 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 22:13:09] 2025-10-12 01:04:19,088 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 22:13:09] 2025-10-12 01:04:19,088 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 22:13:09] 2025-10-12 01:04:19,088 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 22:13:09] 2025-10-12 01:04:19,088 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 22:13:09] 2025-10-12 01:04:19,089 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 22:13:09] 2025-10-12 01:04:19,089 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 22:13:09] 2025-10-12 01:04:19,089 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 22:13:09] 2025-10-12 01:04:19,089 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 22:13:09] 2025-10-12 01:04:19,089 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 22:13:09] 2025-10-12 01:04:19,089 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 22:13:09] 2025-10-12 01:04:19,089 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 22:13:09] 2025-10-12 01:04:19,089 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 22:13:09] 2025-10-12 01:04:19,089 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 22:13:09] 2025-10-12 01:04:19,089 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 22:13:09] 2025-10-12 01:04:19,089 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 22:13:09] 2025-10-12 01:04:19,089 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 22:13:09] 2025-10-12 01:04:19,089 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 22:13:09] 2025-10-12 01:04:19,089 | INFO     | job 6838988522 has completed (purged errors)
[2025-10-11 22:13:09] 2025-10-12 01:04:19,089 | INFO     | overall cleanup function is called
[2025-10-11 22:13:09] 2025-10-12 01:04:20,095 | INFO     | --- collectZombieJob: --- 10, [1593432]
[2025-10-11 22:13:09] 2025-10-12 01:04:20,096 | INFO     | zombie collector waiting for pid 1593432
[2025-10-11 22:13:09] 2025-10-12 01:04:20,096 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 22:13:09] 2025-10-12 01:04:20,096 | INFO     | collected zombie processes
[2025-10-11 22:13:09] 2025-10-12 01:04:20,096 | INFO     | will attempt to kill all subprocesses of pid=1593432
[2025-10-11 22:13:09] 2025-10-12 01:04:20,162 | INFO     | process IDs to be killed: [1593432] (in reverse order)
[2025-10-11 22:13:09] 2025-10-12 01:04:20,191 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 22:13:09] 2025-10-12 01:04:20,192 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 22:13:09] 2025-10-12 01:04:20,194 | INFO     | did not find any defunct processes belonging to 1593432
[2025-10-11 22:13:09] 2025-10-12 01:04:20,195 | INFO     | did not find any defunct processes belonging to 1593432
[2025-10-11 22:13:09] 2025-10-12 01:04:20,196 | INFO     | ready for new job
[2025-10-11 22:13:09] 2025-10-12 01:04:20,196 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 22:13:09] 2025-10-12 01:04:20,196 | INFO     | ***************************************
[2025-10-11 22:13:09] 2025-10-12 01:04:20,196 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 22:13:09] 2025-10-12 01:04:20,196 | INFO     | ***************************************
[2025-10-11 22:13:09] 2025-10-12 01:04:20,196 | INFO     | 
[2025-10-11 22:13:09] 2025-10-12 01:04:20,197 | INFO     | architecture information:
[2025-10-11 22:13:09] 2025-10-12 01:04:20,197 | INFO     | executing command: cat /etc/os-release
[2025-10-11 22:13:09] 2025-10-12 01:04:20,206 | INFO     | cat /etc/os-release:
[2025-10-11 22:13:09] NAME="CentOS Linux"
[2025-10-11 22:13:09] VERSION="7 (Core)"
[2025-10-11 22:13:09] ID="centos"
[2025-10-11 22:13:09] ID_LIKE="rhel fedora"
[2025-10-11 22:13:09] VERSION_ID="7"
[2025-10-11 22:13:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 22:13:09] ANSI_COLOR="0;31"
[2025-10-11 22:13:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 22:13:09] HOME_URL="https://www.centos.org/"
[2025-10-11 22:13:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 22:13:09] 
[2025-10-11 22:13:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 22:13:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 22:13:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 22:13:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 22:13:09] 
[2025-10-11 22:13:09] 2025-10-12 01:04:20,206 | INFO     | ***************************************
[2025-10-11 22:13:09] 2025-10-12 01:04:20,708 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-10-11 22:13:09] 2025-10-12 01:04:20,720 | INFO     | sufficient remaining disk space (707506733056 B)
[2025-10-11 22:13:09] 2025-10-12 01:04:20,720 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 22:13:09] 2025-10-12 01:04:20,720 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 22:13:09] 2025-10-12 01:04:20,720 | INFO     | update_server=False
[2025-10-11 22:13:09] 2025-10-12 01:04:20,720 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 22:13:09] 2025-10-12 01:04:20,720 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:13:09] 2025-10-12 01:04:20,720 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:13:09] 2025-10-12 01:04:20,721 | INFO     | aborting loop
[2025-10-11 22:13:09] 2025-10-12 01:04:20,940 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 22:13:09] 2025-10-12 01:04:21,554 | INFO     | all data control threads have been joined
[2025-10-11 22:13:09] 2025-10-12 01:04:21,725 | INFO     | [job] retrieve thread has finished
[2025-10-11 22:13:09] 2025-10-12 01:04:21,726 | INFO     | [job] queue monitor thread has finished
[2025-10-11 22:13:09] 2025-10-12 01:04:21,726 | INFO     | [job] job monitor thread has finished
[2025-10-11 22:13:09] 2025-10-12 01:04:21,854 | INFO     | all job control threads have been joined
[2025-10-11 22:13:09] 2025-10-12 01:04:21,941 | INFO     | all payload control threads have been joined
[2025-10-11 22:13:09] 2025-10-12 01:04:21,950 | INFO     | [payload] failed_post thread has finished
[2025-10-11 22:13:09] 2025-10-12 01:04:22,127 | INFO     | [job] validate thread has finished
[2025-10-11 22:13:09] 2025-10-12 01:04:22,230 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 22:13:09] 2025-10-12 01:04:22,263 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 22:13:09] 2025-10-12 01:04:22,343 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 22:13:09] 2025-10-12 01:04:22,464 | INFO     | [data] copytool_in thread has finished
[2025-10-11 22:13:09] 2025-10-12 01:04:22,482 | INFO     | [payload] validate_post thread has finished
[2025-10-11 22:13:09] 2025-10-12 01:04:22,559 | INFO     | [data] control thread has finished
[2025-10-11 22:13:09] 2025-10-12 01:04:22,834 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 22:13:09] 2025-10-12 01:04:22,859 | INFO     | [job] control thread has finished
[2025-10-11 22:13:09] 2025-10-12 01:04:22,945 | INFO     | [data] copytool_out thread has finished
[2025-10-11 22:13:09] 2025-10-12 01:04:22,946 | INFO     | [payload] control thread has finished
[2025-10-11 22:13:09] 2025-10-12 01:04:23,628 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 22:13:09] 2025-10-12 01:04:27,633 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 22:13:09] 2025-10-12 01:04:47,346 | INFO     | [monitor] cgroup control has ended
[2025-10-11 22:13:09] 2025-10-12 01:04:48,611 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138956843448128)>', '<ExcThread(monitor, started 138956075165440)>']
[2025-10-11 22:13:09] 2025-10-12 01:04:51,844 | INFO     | PID=1586900 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 22:13:09] 2025-10-12 01:04:51,844 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 22:13:09] 2025-10-12 01:04:51,844 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 22:13:09] 2025-10-12 01:04:51,844 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 22:13:09] 2025-10-12 01:04:51,845 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 22:13:09] 2025-10-12 01:04:51,845 | INFO     | [monitor] control thread has ended
[2025-10-11 22:13:09] 2025-10-12 01:04:53,636 | INFO     | all workflow threads have been joined
[2025-10-11 22:13:09] 2025-10-12 01:04:53,636 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 22:13:09] 2025-10-12 01:04:53,637 | INFO     | traces error code: 0
[2025-10-11 22:13:09] 2025-10-12 01:04:53,637 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 22:13:09] 2025-10-12 01:04:53,708 [wrapper] ==== pilot stdout END ====
[2025-10-11 22:13:09] 2025-10-12 01:04:53,709 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 22:13:09] 2025-10-12 01:04:53,710 [wrapper] pilotpid: 1586900
[2025-10-11 22:13:09] 2025-10-12 01:04:53,711 [wrapper] Pilot exit status: 0
[2025-10-11 22:13:09] 2025-10-12 01:04:53,720 [wrapper] pandaids: 6838988522
[2025-10-11 22:13:09] 2025-10-12 01:04:53,737 [wrapper] cleanup supervisor_pilot 1636493 1586901
[2025-10-11 22:13:09] 2025-10-12 01:04:53,738 [wrapper] Test setup, not cleaning
[2025-10-11 22:13:09] 2025-10-12 01:04:53,740 [wrapper] apfmon messages muted
[2025-10-11 22:13:09] 2025-10-12 01:04:53,741 [wrapper] ==== wrapper stdout END ====
[2025-10-11 22:13:09] 2025-10-12 01:04:53,742 [wrapper] ==== wrapper stderr END ====
[2025-10-11 22:13:09]  *** Error codes and diagnostics ***
[2025-10-11 22:13:09]     "exeErrorCode": 0,
[2025-10-11 22:13:09]     "exeErrorDiag": "",
[2025-10-11 22:13:09]     "pilotErrorCode": 0,
[2025-10-11 22:13:09]     "pilotErrorDiag": "",
[2025-10-11 22:13:09]  *** Listing of results directory ***
[2025-10-11 22:13:09] total 408088
[2025-10-11 22:13:09] -rw-r--r-- 1 boinc boinc    557409 Oct 11 13:53 pilot3.tar.gz
[2025-10-11 22:13:09] -rw-r--r-- 1 boinc boinc      5112 Oct 11 13:57 queuedata.json
[2025-10-11 22:13:09] -rwx------ 1 boinc boinc     36292 Oct 11 13:58 runpilot2-wrapper.sh
[2025-10-11 22:13:09] -rw-r--r-- 1 boinc boinc       100 Oct 11 16:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 22:13:09] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 16:46 run_atlas
[2025-10-11 22:13:09] -rw-r--r-- 1 boinc boinc       105 Oct 11 16:46 job.xml
[2025-10-11 22:13:09] -rw-r--r-- 2 boinc boinc 218443368 Oct 11 16:46 EVNT.46676267._000088.pool.root.1
[2025-10-11 22:13:09] drwxrwx--x 2 boinc boinc      4096 Oct 11 16:46 shared
[2025-10-11 22:13:09] -rw-r--r-- 2 boinc boinc    569681 Oct 11 16:46 input.tar.gz
[2025-10-11 22:13:09] -rw-r--r-- 2 boinc boinc     15120 Oct 11 16:46 start_atlas.sh
[2025-10-11 22:13:09] -rw-r--r-- 1 boinc boinc         0 Oct 11 16:46 boinc_setup_complete
[2025-10-11 22:13:09] -rw-r--r-- 1 boinc boinc      9041 Oct 11 16:46 init_data.xml
[2025-10-11 22:13:09] -rw-r--r-- 1 boinc boinc         0 Oct 11 16:46 boinc_lockfile
[2025-10-11 22:13:09] -rw-r--r-- 1 boinc boinc      2542 Oct 11 16:46 pandaJob.out
[2025-10-11 22:13:09] -rw------- 1 boinc boinc    975528 Oct 11 16:46 agis_schedconf.cvmfs.json
[2025-10-11 22:13:09] -rw------- 1 boinc boinc   1560580 Oct 11 16:46 agis_ddmendpoints.agis.ALL.json
[2025-10-11 22:13:09] drwx------ 5 boinc boinc      4096 Oct 11 16:46 pilot3
[2025-10-11 22:13:09] -rw------- 1 boinc boinc 193645131 Oct 11 18:03 HITS.46676269._064954.pool.root.1
[2025-10-11 22:13:09] -rw-r--r-- 1 boinc boinc       529 Oct 11 18:03 boinc_task_state.xml
[2025-10-11 22:13:09] -rw------- 1 boinc boinc      1036 Oct 11 18:04 memory_monitor_summary.json
[2025-10-11 22:13:09] -rw------- 1 boinc boinc        95 Oct 11 18:04 pilot_heartbeat.json
[2025-10-11 22:13:09] -rw------- 1 boinc boinc    251596 Oct 11 18:04 log.46676269._064954.job.log.tgz.1
[2025-10-11 22:13:09] -rw------- 1 boinc boinc      7801 Oct 11 18:04 heartbeat.json
[2025-10-11 22:13:09] -rw------- 1 boinc boinc      4749 Oct 11 18:04 pilotlog.txt
[2025-10-11 22:13:09] -rw------- 1 boinc boinc    690983 Oct 11 18:04 log.46676269._064954.job.log.1
[2025-10-11 22:13:09] -rw------- 1 boinc boinc       357 Oct 11 18:04 output.list
[2025-10-11 22:13:09] -rw-r--r-- 1 boinc boinc       620 Oct 11 18:04 runtime_log
[2025-10-11 22:13:09] -rw------- 1 boinc boinc    962560 Oct 11 18:04 result.tar.gz
[2025-10-11 22:13:09] -rw------- 1 boinc boinc       652 Oct 11 18:04 WHdMDmqqvR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQchNDmV4mnQm.diag
[2025-10-11 22:13:09] -rw-r--r-- 1 boinc boinc      8693 Oct 11 18:04 runtime_log.err
[2025-10-11 22:13:09] -rw-r--r-- 1 boinc boinc      8192 Oct 11 22:13 boinc_mmap_file
[2025-10-11 22:13:09] -rw-r--r-- 1 boinc boinc     21900 Oct 11 22:13 stderr.txt
[2025-10-11 22:13:09] -rw-r--r-- 1 boinc boinc        27 Oct 11 22:13 wrapper_checkpoint.txt
[2025-10-11 22:13:09] HITS file was successfully produced:
[2025-10-11 22:13:09] -rw------- 1 boinc boinc 193645131 Oct 11 18:03 shared/HITS.pool.root.1
[2025-10-11 22:13:09]  *** Contents of shared directory: ***
[2025-10-11 22:13:09] total 403956
[2025-10-11 22:13:09] -rw-r--r-- 2 boinc boinc 218443368 Oct 11 16:46 ATLAS.root_0
[2025-10-11 22:13:09] -rw-r--r-- 2 boinc boinc    569681 Oct 11 16:46 input.tar.gz
[2025-10-11 22:13:09] -rw-r--r-- 2 boinc boinc     15120 Oct 11 16:46 start_atlas.sh
[2025-10-11 22:13:09] -rw------- 1 boinc boinc 193645131 Oct 11 18:03 HITS.pool.root.1
[2025-10-11 22:13:09] -rw------- 1 boinc boinc    962560 Oct 11 18:04 result.tar.gz
22:13:11 (1583122): run_atlas exited; CPU time 17862.258098
22:13:11 (1583122): called boinc_finish(0)

</stderr_txt>
]]>

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