Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:31:52 (271106): wrapper (7.7.26015): starting
11:31:52 (271106): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 11:31:52] Arguments: --nthreads 4
[2025-10-13 11:31:52] Threads: 4
[2025-10-13 11:31:52] Checking for CVMFS
[2025-10-13 11:31:52] No cvmfs_config command found, will try listing directly
[2025-10-13 11:31:52] CVMFS is ok
[2025-10-13 11:31:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 11:31:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 11:31:52] Further information can be found at the LHC@home message board.
[2025-10-13 11:31:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 11:31:52] Checking for apptainer binary...
[2025-10-13 11:31:52] which: no apptainer in ((null))
[2025-10-13 11:31:52] apptainer is not installed, using version from CVMFS
[2025-10-13 11:31:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 11:31:52] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2025-10-13 11:31:52] apptainer works
[2025-10-13 11:31:52] Set ATHENA_PROC_NUMBER=4
[2025-10-13 11:31:52] Set ATHENA_CORE_NUMBER=4
[2025-10-13 11:31:52] Starting ATLAS job with PandaID=6838772291
[2025-10-13 11:31:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 14:29:17]  *** The last 200 lines of the pilot log: ***
[2025-10-13 14:29:17] 2025-10-13 12:20:40,866 | INFO     | PID=278036 has CPU usage=16.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 14:29:17] 2025-10-13 12:20:40,866 | INFO     | .. there are 9 such processes running
[2025-10-13 14:29:17] 2025-10-13 12:20:41,139 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 14:29:17] 2025-10-13 12:20:41,159 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2712.7640390625006
[2025-10-13 14:29:17] 2025-10-13 12:20:41,184 | INFO     | using path: /scratch/boinc/var/slot128/slots/0/PanDA_Pilot-6838772291/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 14:29:17] 2025-10-13 12:20:41,184 | INFO     | extracted standard info from prmon json
[2025-10-13 14:29:17] 2025-10-13 12:20:41,184 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 14:29:17] 2025-10-13 12:20:41,185 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 14:29:17] 2025-10-13 12:20:41,185 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 14:29:17] 2025-10-13 12:20:41,185 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 14:29:17] 2025-10-13 12:20:41,188 | INFO     | fitting pss+swap vs Time
[2025-10-13 14:29:17] 2025-10-13 12:20:41,188 | INFO     | sum of square deviations: 1392881930.0
[2025-10-13 14:29:17] 2025-10-13 12:20:41,189 | INFO     | sum of deviations: -338213096.9999984
[2025-10-13 14:29:17] 2025-10-13 12:20:41,189 | INFO     | mean x: 1760352963.0
[2025-10-13 14:29:17] 2025-10-13 12:20:41,190 | INFO     | mean y: 2349099.036363636
[2025-10-13 14:29:17] 2025-10-13 12:20:41,190 | INFO     | -- intersect: 429789799.21785975
[2025-10-13 14:29:17] 2025-10-13 12:20:41,190 | INFO     | intersect: 429789799.21785975
[2025-10-13 14:29:17] 2025-10-13 12:20:41,190 | INFO     | chi2: 1.3809574573352752
[2025-10-13 14:29:17] 2025-10-13 12:20:41,190 | INFO     | sum of square deviations: 1270051720.0
[2025-10-13 14:29:17] 2025-10-13 12:20:41,191 | INFO     | sum of deviations: -358681891.0
[2025-10-13 14:29:17] 2025-10-13 12:20:41,194 | INFO     | mean x: 1760352810.5
[2025-10-13 14:29:17] 2025-10-13 12:20:41,195 | INFO     | mean y: 2349072.625
[2025-10-13 14:29:17] 2025-10-13 12:20:41,195 | INFO     | -- intersect: 499499436.6253768
[2025-10-13 14:29:17] 2025-10-13 12:20:41,195 | INFO     | intersect: 499499436.6253768
[2025-10-13 14:29:17] 2025-10-13 12:20:41,195 | INFO     | chi2: 1.3808055587533377
[2025-10-13 14:29:17] 2025-10-13 12:20:41,195 | INFO     | current chi2=1.3808055587533377 (change=0.01099951205091025 %)
[2025-10-13 14:29:17] 2025-10-13 12:20:41,195 | INFO     | right removable region: 159
[2025-10-13 14:29:17] 2025-10-13 12:20:41,196 | INFO     | sum of square deviations: 1270051720.0
[2025-10-13 14:29:17] 2025-10-13 12:20:41,196 | INFO     | sum of deviations: -19584548065.0
[2025-10-13 14:29:17] 2025-10-13 12:20:41,197 | INFO     | mean x: 1760353115.5
[2025-10-13 14:29:17] 2025-10-13 12:20:41,197 | INFO     | mean y: 2372568.625
[2025-10-13 14:29:17] 2025-10-13 12:20:41,197 | INFO     | -- intersect: 27147503478.63412
[2025-10-13 14:29:17] 2025-10-13 12:20:41,197 | INFO     | intersect: 27147503478.63412
[2025-10-13 14:29:17] 2025-10-13 12:20:41,197 | INFO     | chi2: 0.08558763080158664
[2025-10-13 14:29:17] 2025-10-13 12:20:41,197 | INFO     | current chi2=0.08558763080158664 (change=93.80229779368162 %)
[2025-10-13 14:29:17] 2025-10-13 12:20:41,197 | INFO     | sum of square deviations: 1154663510.0
[2025-10-13 14:29:17] 2025-10-13 12:20:41,198 | INFO     | sum of deviations: -16634737027.0
[2025-10-13 14:29:17] 2025-10-13 12:20:41,198 | INFO     | mean x: 1760353268.0
[2025-10-13 14:29:17] 2025-10-13 12:20:41,199 | INFO     | mean y: 2368663.019354839
[2025-10-13 14:29:17] 2025-10-13 12:20:41,199 | INFO     | -- intersect: 25363015669.00299
[2025-10-13 14:29:17] 2025-10-13 12:20:41,199 | INFO     | intersect: 25363015669.00299
[2025-10-13 14:29:17] 2025-10-13 12:20:41,199 | INFO     | chi2: 0.0833441721148593
[2025-10-13 14:29:17] 2025-10-13 12:20:41,199 | INFO     | current chi2=0.0833441721148593 (change=2.621241721164404 %)
[2025-10-13 14:29:17] 2025-10-13 12:20:41,199 | INFO     | left removable region: 20
[2025-10-13 14:29:17] 2025-10-13 12:20:41,200 | INFO     | sum of square deviations: 832722590.0
[2025-10-13 14:29:17] 2025-10-13 12:20:41,200 | INFO     | sum of deviations: -9275409290.0
[2025-10-13 14:29:17] 2025-10-13 12:20:41,200 | INFO     | mean x: 1760353390.0
[2025-10-13 14:29:17] 2025-10-13 12:20:41,201 | INFO     | mean y: 2358656.9136690646
[2025-10-13 14:29:17] 2025-10-13 12:20:41,201 | INFO     | -- intersect: 19610327004.79888
[2025-10-13 14:29:17] 2025-10-13 12:20:41,201 | INFO     | intersect: 19610327004.79888
[2025-10-13 14:29:17] 2025-10-13 12:20:41,201 | INFO     | chi2: 0.06544004888115576
[2025-10-13 14:29:17] 2025-10-13 12:20:41,201 | INFO     | -- intersect: 19610327004.79888
[2025-10-13 14:29:17] 2025-10-13 12:20:41,201 | INFO     | current memory leak: -11.14 B/s (using 139 data points, chi2=0.07)
[2025-10-13 14:29:17] 2025-10-13 12:20:41,202 | INFO     | could have reported an average CPU frequency of 2715 MHz (9 samples)
[2025-10-13 14:29:17] 2025-10-13 12:20:41,202 | INFO     | ..............................
[2025-10-13 14:29:17] 2025-10-13 12:20:41,202 | INFO     | . Timing measurements:
[2025-10-13 14:29:17] 2025-10-13 12:20:41,202 | INFO     | . get job = 0 s
[2025-10-13 14:29:17] 2025-10-13 12:20:41,202 | INFO     | . initial setup = 1 s
[2025-10-13 14:29:17] 2025-10-13 12:20:41,202 | INFO     | . payload setup = 8 s
[2025-10-13 14:29:17] 2025-10-13 12:20:41,202 | INFO     | . stage-in = 0 s
[2025-10-13 14:29:17] 2025-10-13 12:20:41,202 | INFO     | . payload execution = 10071 s
[2025-10-13 14:29:17] 2025-10-13 12:20:41,202 | INFO     | . stage-out = 0 s
[2025-10-13 14:29:17] 2025-10-13 12:20:41,202 | INFO     | . log creation = 0 s
[2025-10-13 14:29:17] 2025-10-13 12:20:41,203 | INFO     | ..............................
[2025-10-13 14:29:17] 2025-10-13 12:20:41,389 | INFO     | 
[2025-10-13 14:29:17] 2025-10-13 12:20:41,389 | INFO     | job summary report
[2025-10-13 14:29:17] 2025-10-13 12:20:41,389 | INFO     | --------------------------------------------------
[2025-10-13 14:29:17] 2025-10-13 12:20:41,389 | INFO     | PanDA job id: 6838772291
[2025-10-13 14:29:17] 2025-10-13 12:20:41,390 | INFO     | task id: 46676269
[2025-10-13 14:29:17] 2025-10-13 12:20:41,390 | INFO     | errors: (none)
[2025-10-13 14:29:17] 2025-10-13 12:20:41,390 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 14:29:17] 2025-10-13 12:20:41,390 | INFO     | pilot state: finished 
[2025-10-13 14:29:17] 2025-10-13 12:20:41,390 | INFO     | transexitcode: 0
[2025-10-13 14:29:17] 2025-10-13 12:20:41,390 | INFO     | exeerrorcode: 0
[2025-10-13 14:29:17] 2025-10-13 12:20:41,390 | INFO     | exeerrordiag: 
[2025-10-13 14:29:17] 2025-10-13 12:20:41,390 | INFO     | exitcode: 0
[2025-10-13 14:29:17] 2025-10-13 12:20:41,390 | INFO     | exitmsg: OK
[2025-10-13 14:29:17] 2025-10-13 12:20:41,390 | INFO     | cpuconsumptiontime: 39151 s
[2025-10-13 14:29:17] 2025-10-13 12:20:41,390 | INFO     | nevents: 400
[2025-10-13 14:29:17] 2025-10-13 12:20:41,391 | INFO     | neventsw: 0
[2025-10-13 14:29:17] 2025-10-13 12:20:41,391 | INFO     | pid: 295890
[2025-10-13 14:29:17] 2025-10-13 12:20:41,391 | INFO     | pgrp: 295890
[2025-10-13 14:29:17] 2025-10-13 12:20:41,391 | INFO     | corecount: 4
[2025-10-13 14:29:17] 2025-10-13 12:20:41,391 | INFO     | event service: False
[2025-10-13 14:29:17] 2025-10-13 12:20:41,391 | INFO     | sizes: {0: 2348696, 1: 2348895, 8: 2349157, 12: 2349185, 10084: 2378292, 10085: 2378291, 10087: 2387497, 10089: 2387553, 10096: 2387811}
[2025-10-13 14:29:17] 2025-10-13 12:20:41,391 | INFO     | --------------------------------------------------
[2025-10-13 14:29:17] 2025-10-13 12:20:41,391 | INFO     | 
[2025-10-13 14:29:17] 2025-10-13 12:20:41,391 | INFO     | executing command: ls -lF /scratch/boinc/var/slot128/slots/0
[2025-10-13 14:29:17] 2025-10-13 12:20:41,428 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 14:29:17] 2025-10-13 12:20:41,429 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 14:29:17] 2025-10-13 12:20:41,429 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 14:29:17] 2025-10-13 12:20:41,429 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 14:29:17] 2025-10-13 12:20:41,429 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 14:29:17] 2025-10-13 12:20:41,429 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 14:29:17] 2025-10-13 12:20:41,429 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 14:29:17] 2025-10-13 12:20:41,429 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 14:29:17] 2025-10-13 12:20:41,429 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 14:29:17] 2025-10-13 12:20:41,430 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 14:29:17] 2025-10-13 12:20:41,430 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 14:29:17] 2025-10-13 12:20:41,430 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 14:29:17] 2025-10-13 12:20:41,430 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 14:29:17] 2025-10-13 12:20:41,430 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 14:29:17] 2025-10-13 12:20:41,430 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 14:29:17] 2025-10-13 12:20:41,430 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 14:29:17] 2025-10-13 12:20:41,430 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 14:29:17] 2025-10-13 12:20:41,430 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 14:29:17] 2025-10-13 12:20:41,430 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 14:29:17] 2025-10-13 12:20:41,431 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 14:29:17] 2025-10-13 12:20:41,431 | INFO     | job 6838772291 has completed (purged errors)
[2025-10-13 14:29:17] 2025-10-13 12:20:41,431 | INFO     | overall cleanup function is called
[2025-10-13 14:29:17] 2025-10-13 12:20:42,440 | INFO     | --- collectZombieJob: --- 10, [295890]
[2025-10-13 14:29:17] 2025-10-13 12:20:42,441 | INFO     | zombie collector waiting for pid 295890
[2025-10-13 14:29:17] 2025-10-13 12:20:42,441 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 14:29:17] 2025-10-13 12:20:42,441 | INFO     | collected zombie processes
[2025-10-13 14:29:17] 2025-10-13 12:20:42,441 | INFO     | will attempt to kill all subprocesses of pid=295890
[2025-10-13 14:29:17] 2025-10-13 12:20:43,137 | INFO     | process IDs to be killed: [295890] (in reverse order)
[2025-10-13 14:29:17] 2025-10-13 12:20:43,396 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 14:29:17] 2025-10-13 12:20:43,396 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 14:29:17] 2025-10-13 12:20:43,427 | INFO     | did not find any defunct processes belonging to 295890
[2025-10-13 14:29:17] 2025-10-13 12:20:43,454 | INFO     | did not find any defunct processes belonging to 295890
[2025-10-13 14:29:17] 2025-10-13 12:20:43,455 | INFO     | ready for new job
[2025-10-13 14:29:17] 2025-10-13 12:20:43,455 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 14:29:17] 2025-10-13 12:20:43,457 | INFO     | ***************************************
[2025-10-13 14:29:17] 2025-10-13 12:20:43,457 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 14:29:17] 2025-10-13 12:20:43,458 | INFO     | ***************************************
[2025-10-13 14:29:17] 2025-10-13 12:20:43,458 | INFO     | 
[2025-10-13 14:29:17] 2025-10-13 12:20:43,466 | INFO     | architecture information:
[2025-10-13 14:29:17] 2025-10-13 12:20:43,466 | INFO     | executing command: cat /etc/os-release
[2025-10-13 14:29:17] 2025-10-13 12:20:43,490 | INFO     | cat /etc/os-release:
[2025-10-13 14:29:17] NAME="CentOS Linux"
[2025-10-13 14:29:17] VERSION="7 (Core)"
[2025-10-13 14:29:17] ID="centos"
[2025-10-13 14:29:17] ID_LIKE="rhel fedora"
[2025-10-13 14:29:17] VERSION_ID="7"
[2025-10-13 14:29:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 14:29:17] ANSI_COLOR="0;31"
[2025-10-13 14:29:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 14:29:17] HOME_URL="https://www.centos.org/"
[2025-10-13 14:29:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 14:29:17] 
[2025-10-13 14:29:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 14:29:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 14:29:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 14:29:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 14:29:17] 
[2025-10-13 14:29:17] 2025-10-13 12:20:43,491 | INFO     | ***************************************
[2025-10-13 14:29:17] 2025-10-13 12:20:43,994 | INFO     | executing command: df -mP /scratch/boinc/var/slot128/slots/0
[2025-10-13 14:29:17] 2025-10-13 12:20:44,017 | INFO     | sufficient remaining disk space (3338605166592 B)
[2025-10-13 14:29:17] 2025-10-13 12:20:44,017 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 14:29:17] 2025-10-13 12:20:44,017 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 14:29:17] 2025-10-13 12:20:44,017 | INFO     | update_server=False
[2025-10-13 14:29:17] 2025-10-13 12:20:44,017 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 14:29:17] 2025-10-13 12:20:44,018 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 14:29:17] 2025-10-13 12:20:44,024 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 14:29:17] 2025-10-13 12:20:44,027 | INFO     | aborting loop
[2025-10-13 14:29:17] 2025-10-13 12:20:44,548 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 14:29:17] 2025-10-13 12:20:44,579 | INFO     | all job control threads have been joined
[2025-10-13 14:29:17] 2025-10-13 12:20:44,780 | INFO     | all payload control threads have been joined
[2025-10-13 14:29:17] 2025-10-13 12:20:44,962 | INFO     | all data control threads have been joined
[2025-10-13 14:29:17] 2025-10-13 12:20:45,023 | INFO     | [job] retrieve thread has finished
[2025-10-13 14:29:17] 2025-10-13 12:20:45,031 | INFO     | [job] job monitor thread has finished
[2025-10-13 14:29:17] 2025-10-13 12:20:45,146 | INFO     | [payload] validate_post thread has finished
[2025-10-13 14:29:17] 2025-10-13 12:20:45,198 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 14:29:17] 2025-10-13 12:20:45,408 | INFO     | [job] validate thread has finished
[2025-10-13 14:29:17] 2025-10-13 12:20:45,584 | INFO     | [job] control thread has finished
[2025-10-13 14:29:17] 2025-10-13 12:20:45,598 | INFO     | [data] copytool_in thread has finished
[2025-10-13 14:29:17] 2025-10-13 12:20:45,785 | INFO     | [payload] control thread has finished
[2025-10-13 14:29:17] 2025-10-13 12:20:45,829 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 14:29:17] 2025-10-13 12:20:45,901 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 14:29:17] 2025-10-13 12:20:45,967 | INFO     | [data] control thread has finished
[2025-10-13 14:29:17] 2025-10-13 12:20:46,182 | INFO     | [payload] failed_post thread has finished
[2025-10-13 14:29:17] 2025-10-13 12:20:46,309 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 14:29:17] 2025-10-13 12:20:46,549 | INFO     | [data] copytool_out thread has finished
[2025-10-13 14:29:17] 2025-10-13 12:20:47,314 | INFO     | [job] queue monitor thread has finished
[2025-10-13 14:29:17] 2025-10-13 12:20:48,023 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 14:29:17] 2025-10-13 12:20:54,591 | INFO     | job.realtimelogging is not enabled
[2025-10-13 14:29:17] 2025-10-13 12:20:55,596 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 14:29:17] 2025-10-13 12:21:13,920 | INFO     | PID=278036 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 14:29:17] 2025-10-13 12:21:13,921 | INFO     | .. there are 9 such processes running
[2025-10-13 14:29:17] 2025-10-13 12:21:13,922 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 14:29:17] 2025-10-13 12:21:13,922 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 14:29:17] 2025-10-13 12:21:13,922 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 14:29:17] 2025-10-13 12:21:22,571 | INFO     | [monitor] cgroup control has ended
[2025-10-13 14:29:17] 2025-10-13 12:21:23,105 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23101270607680)>', '<ExcThread(monitor, started 23101031020288)>']
[2025-10-13 14:29:17] 2025-10-13 12:21:23,964 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 14:29:17] 2025-10-13 12:21:23,964 | INFO     | [monitor] control thread has ended
[2025-10-13 14:29:17] 2025-10-13 12:21:28,130 | INFO     | all workflow threads have been joined
[2025-10-13 14:29:17] 2025-10-13 12:21:28,130 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 14:29:17] 2025-10-13 12:21:28,131 | INFO     | traces error code: 0
[2025-10-13 14:29:17] 2025-10-13 12:21:28,131 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 14:29:17] 2025-10-13 12:21:28,296 [wrapper] ==== pilot stdout END ====
[2025-10-13 14:29:17] 2025-10-13 12:21:28,300 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 14:29:17] 2025-10-13 12:21:28,305 [wrapper] pilotpid: 278036
[2025-10-13 14:29:17] 2025-10-13 12:21:28,309 [wrapper] Pilot exit status: 0
[2025-10-13 14:29:17] 2025-10-13 12:21:28,327 [wrapper] pandaids: 6838772291
[2025-10-13 14:29:17] 2025-10-13 12:21:28,507 [wrapper] cleanup supervisor_pilot  756491 278037
[2025-10-13 14:29:17] 2025-10-13 12:21:28,512 [wrapper] Test setup, not cleaning
[2025-10-13 14:29:17] 2025-10-13 12:21:28,515 [wrapper] apfmon messages muted
[2025-10-13 14:29:17] 2025-10-13 12:21:28,520 [wrapper] ==== wrapper stdout END ====
[2025-10-13 14:29:17] 2025-10-13 12:21:28,524 [wrapper] ==== wrapper stderr END ====
[2025-10-13 14:29:17]  *** Error codes and diagnostics ***
[2025-10-13 14:29:17]     "exeErrorCode": 0,
[2025-10-13 14:29:17]     "exeErrorDiag": "",
[2025-10-13 14:29:17]     "pilotErrorCode": 0,
[2025-10-13 14:29:17]     "pilotErrorDiag": "",
[2025-10-13 14:29:17]  *** Listing of results directory ***
[2025-10-13 14:29:17] total 419336
[2025-10-13 14:29:17] -rw-r--r-- 1 boinc boinc    557409 Oct 11 20:14 pilot3.tar.gz
[2025-10-13 14:29:17] -rw-r--r-- 1 boinc boinc      5112 Oct 11 20:16 queuedata.json
[2025-10-13 14:29:17] -rwx------ 1 boinc boinc     36292 Oct 11 20:17 runpilot2-wrapper.sh
[2025-10-13 14:29:17] -rw-r--r-- 1 boinc boinc       100 Oct 13 11:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 14:29:17] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 11:31 run_atlas
[2025-10-13 14:29:17] -rw-r--r-- 1 boinc boinc       105 Oct 13 11:31 job.xml
[2025-10-13 14:29:17] -rw-r--r-- 2 boinc boinc 219702543 Oct 13 11:31 EVNT.46676267._002505.pool.root.1
[2025-10-13 14:29:17] -rw-r--r-- 1 boinc boinc      6688 Oct 13 11:31 init_data.xml
[2025-10-13 14:29:17] -rw-r--r-- 2 boinc boinc     15120 Oct 13 11:31 start_atlas.sh
[2025-10-13 14:29:17] drwxrwx--x 2 boinc boinc      4096 Oct 13 11:31 shared
[2025-10-13 14:29:17] -rw-r--r-- 2 boinc boinc    569676 Oct 13 11:31 input.tar.gz
[2025-10-13 14:29:17] -rw-r--r-- 1 boinc boinc         0 Oct 13 11:31 boinc_lockfile
[2025-10-13 14:29:17] -rw-r--r-- 1 boinc boinc      2549 Oct 13 11:31 pandaJob.out
[2025-10-13 14:29:17] -rw------- 1 boinc boinc    972849 Oct 13 11:32 agis_schedconf.cvmfs.json
[2025-10-13 14:29:17] -rw------- 1 boinc boinc   1560580 Oct 13 11:32 agis_ddmendpoints.agis.ALL.json
[2025-10-13 14:29:17] drwx------ 5 boinc boinc      4096 Oct 13 11:32 pilot3
[2025-10-13 14:29:17] -rw------- 1 boinc boinc 202314770 Oct 13 14:19 HITS.46676269._062352.pool.root.1
[2025-10-13 14:29:17] -rw-r--r-- 1 boinc boinc       528 Oct 13 14:20 boinc_task_state.xml
[2025-10-13 14:29:17] -rw------- 1 boinc boinc      1026 Oct 13 14:20 memory_monitor_summary.json
[2025-10-13 14:29:17] -rw------- 1 boinc boinc    327604 Oct 13 14:20 log.46676269._062352.job.log.tgz.1
[2025-10-13 14:29:17] -rw------- 1 boinc boinc      7787 Oct 13 14:20 heartbeat.json
[2025-10-13 14:29:17] -rw------- 1 boinc boinc        95 Oct 13 14:21 pilot_heartbeat.json
[2025-10-13 14:29:17] -rw------- 1 boinc boinc      4906 Oct 13 14:21 pilotlog.txt
[2025-10-13 14:29:17] -rw------- 1 boinc boinc   1409568 Oct 13 14:21 log.46676269._062352.job.log.1
[2025-10-13 14:29:17] -rw------- 1 boinc boinc       357 Oct 13 14:21 output.list
[2025-10-13 14:29:17] -rw-r--r-- 1 boinc boinc       620 Oct 13 14:21 runtime_log
[2025-10-13 14:29:17] -rw------- 1 boinc boinc   1761280 Oct 13 14:21 result.tar.gz
[2025-10-13 14:29:17] -rw-r--r-- 1 boinc boinc      9085 Oct 13 14:21 runtime_log.err
[2025-10-13 14:29:17] -rw------- 1 boinc boinc       666 Oct 13 14:21 SSzNDmELtR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwBhNDmmII8zm.diag
[2025-10-13 14:29:17] -rw-r--r-- 1 boinc boinc        26 Oct 13 14:29 wrapper_checkpoint.txt
[2025-10-13 14:29:17] -rw-r--r-- 1 boinc boinc      8192 Oct 13 14:29 boinc_mmap_file
[2025-10-13 14:29:17] -rw-r--r-- 1 boinc boinc     20944 Oct 13 14:29 stderr.txt
[2025-10-13 14:29:17] HITS file was successfully produced:
[2025-10-13 14:29:17] -rw------- 1 boinc boinc 202314770 Oct 13 14:19 shared/HITS.pool.root.1
[2025-10-13 14:29:17]  *** Contents of shared directory: ***
[2025-10-13 14:29:17] total 414436
[2025-10-13 14:29:17] -rw-r--r-- 2 boinc boinc 219702543 Oct 13 11:31 ATLAS.root_0
[2025-10-13 14:29:17] -rw-r--r-- 2 boinc boinc     15120 Oct 13 11:31 start_atlas.sh
[2025-10-13 14:29:17] -rw-r--r-- 2 boinc boinc    569676 Oct 13 11:31 input.tar.gz
[2025-10-13 14:29:17] -rw------- 1 boinc boinc 202314770 Oct 13 14:19 HITS.pool.root.1
[2025-10-13 14:29:17] -rw------- 1 boinc boinc   1761280 Oct 13 14:21 result.tar.gz
14:29:18 (271106): run_atlas exited; CPU time 39801.922851
14:29:18 (271106): called boinc_finish(0)

</stderr_txt>
]]>

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