Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:23:22 (3312074): wrapper (7.7.26015): starting
19:23:22 (3312074): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 19:23:22] Arguments: --nthreads 8
[2025-10-11 19:23:22] Threads: 8
[2025-10-11 19:23:22] Checking for CVMFS
[2025-10-11 19:23:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 19:23:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 19:23:22] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 19:23:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 19:23:23] 2.13.1.0 4140 3452 71980 151600 2 180 34280700 39288833 3664 16776704 0 11918001 99.997 117944 33602 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 19:23:23] CVMFS is ok
[2025-10-11 19:23:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 19:23:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 19:23:23] Further information can be found at the LHC@home message board.
[2025-10-11 19:23:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 19:23:23] Checking for apptainer binary...
[2025-10-11 19:23:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 19:23:23] Running /usr/bin/apptainer --version
[2025-10-11 19:23:23] apptainer version 1.4.3-1.el9
[2025-10-11 19:23:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 19:23:23] c-210-16.aglt2.org
[2025-10-11 19:23:23] apptainer works
[2025-10-11 19:23:23] Set ATHENA_PROC_NUMBER=8
[2025-10-11 19:23:23] Set ATHENA_CORE_NUMBER=8
[2025-10-11 19:23:23] Starting ATLAS job with PandaID=6838773147
[2025-10-11 19:23:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 21:00:07]  *** The last 200 lines of the pilot log: ***
[2025-10-11 21:00:07]  status=None
[2025-10-11 21:00:07]  status_code=0
[2025-10-11 21:00:07]  storage_token=
[2025-10-11 21:00:07]  surl=/tmp/boinchome/slots/4/PanDA_Pilot-6838773147/log.46676269._062577.job.log.tgz.1
[2025-10-11 21:00:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a1/51/log.46676269._062577.job.log.tgz.1
[2025-10-11 21:00:07]  workdir=None
[2025-10-11 21:00:07] ]
[2025-10-11 21:00:07] 2025-10-12 00:59:28,419 | INFO     | transferring file log.46676269._062577.job.log.tgz.1 from /tmp/boinchome/slots/4/PanDA_Pilot-6838773147/log.46676269._062577.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 21:00:07] 2025-10-12 00:59:28,420 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/4/PanDA_Pilot-6838773147/log.46676269._062577.job.log.tgz.1 /tmp/boinchome/slots/4/log.46676269._062577.job
[2025-10-11 21:00:07] 2025-10-12 00:59:28,437 | INFO     | adding to output.list: log.46676269._062577.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a1/51/log.46676269._062577.job.log.tg
[2025-10-11 21:00:07] 2025-10-12 00:59:28,438 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 21:00:07] 2025-10-12 00:59:28,438 | INFO     | summary of transferred files:
[2025-10-11 21:00:07] 2025-10-12 00:59:28,438 | INFO     |  -- lfn=log.46676269._062577.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 21:00:07] 2025-10-12 00:59:28,438 | INFO     | stage-out finished correctly
[2025-10-11 21:00:07] 2025-10-12 00:59:29,772 | INFO     | time since job start (5756s) is within the limit (172800.0s)
[2025-10-11 21:00:07] 2025-10-12 00:59:29,950 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 21:00:07] 2025-10-12 00:59:30,236 | INFO     | monitor loop #429: job 0:6838773147 is in state 'finished'
[2025-10-11 21:00:07] 2025-10-12 00:59:30,237 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 21:00:07] 2025-10-12 00:59:31,777 | INFO     | time since job start (5758s) is within the limit (172800.0s)
[2025-10-11 21:00:07] 2025-10-12 00:59:31,894 | INFO     | job 6838773147 has state=finished
[2025-10-11 21:00:07] 2025-10-12 00:59:31,894 | INFO     | preparing for final server update for job 6838773147 in state='finished'
[2025-10-11 21:00:07] 2025-10-12 00:59:31,895 | INFO     | this job has now completed (state=finished)
[2025-10-11 21:00:07] 2025-10-12 00:59:31,895 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 21:00:07] 2025-10-12 00:59:31,895 | INFO     | log transfer has been attempted: DONE
[2025-10-11 21:00:07] 2025-10-12 00:59:31,895 | INFO     | job 6838773147 has finished - writing final server update
[2025-10-11 21:00:07] 2025-10-12 00:59:31,896 | INFO     | total number of processed events: 400 (read)
[2025-10-11 21:00:07] 2025-10-12 00:59:31,896 | INFO     | executing command: lscpu
[2025-10-11 21:00:07] 2025-10-12 00:59:31,935 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 21:00:07] 2025-10-12 00:59:32,739 | INFO     | monitor loop #430: job 0:6838773147 is in state 'finished'
[2025-10-11 21:00:07] 2025-10-12 00:59:32,739 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 21:00:07] 2025-10-12 00:59:33,782 | INFO     | time since job start (5760s) is within the limit (172800.0s)
[2025-10-11 21:00:07] 2025-10-12 00:59:35,242 | INFO     | monitor loop #431: job 0:6838773147 is in state 'finished'
[2025-10-11 21:00:07] 2025-10-12 00:59:35,242 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 21:00:07] 2025-10-12 00:59:35,470 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 21:00:07] 2025-10-12 00:59:35,477 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2660.28675
[2025-10-11 21:00:07] 2025-10-12 00:59:35,484 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6838773147/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 21:00:07] 2025-10-12 00:59:35,484 | INFO     | extracted standard info from prmon json
[2025-10-11 21:00:07] 2025-10-12 00:59:35,485 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 21:00:07] 2025-10-12 00:59:35,485 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 21:00:07] 2025-10-12 00:59:35,485 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 21:00:07] 2025-10-12 00:59:35,485 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 21:00:07] 2025-10-12 00:59:35,488 | INFO     | fitting pss+swap vs Time
[2025-10-11 21:00:07] 2025-10-12 00:59:35,488 | INFO     | sum of square deviations: 204163828.0
[2025-10-11 21:00:07] 2025-10-12 00:59:35,488 | INFO     | sum of deviations: -10245056750.0
[2025-10-11 21:00:07] 2025-10-12 00:59:35,489 | INFO     | mean x: 1760227966.0
[2025-10-11 21:00:07] 2025-10-12 00:59:35,489 | INFO     | mean y: 2610905.0689655175
[2025-10-11 21:00:07] 2025-10-12 00:59:35,489 | INFO     | -- intersect: 88331849150.96957
[2025-10-11 21:00:07] 2025-10-12 00:59:35,489 | INFO     | intersect: 88331849150.96957
[2025-10-11 21:00:07] 2025-10-12 00:59:35,489 | INFO     | chi2: 0.026938021552360768
[2025-10-11 21:00:07] 2025-10-12 00:59:35,489 | INFO     | -- intersect: 88331849150.96957
[2025-10-11 21:00:07] 2025-10-12 00:59:35,489 | INFO     | current memory leak: -50.18 B/s (using 87 data points, chi2=0.03)
[2025-10-11 21:00:07] 2025-10-12 00:59:35,490 | INFO     | could have reported an average CPU frequency of 2608 MHz (7 samples)
[2025-10-11 21:00:07] 2025-10-12 00:59:35,490 | INFO     | ..............................
[2025-10-11 21:00:07] 2025-10-12 00:59:35,490 | INFO     | . Timing measurements:
[2025-10-11 21:00:07] 2025-10-12 00:59:35,490 | INFO     | . get job = 0 s
[2025-10-11 21:00:07] 2025-10-12 00:59:35,490 | INFO     | . initial setup = 2 s
[2025-10-11 21:00:07] 2025-10-12 00:59:35,490 | INFO     | . payload setup = 5 s
[2025-10-11 21:00:07] 2025-10-12 00:59:35,490 | INFO     | . stage-in = 0 s
[2025-10-11 21:00:07] 2025-10-12 00:59:35,491 | INFO     | . payload execution = 5728 s
[2025-10-11 21:00:07] 2025-10-12 00:59:35,491 | INFO     | . stage-out = 1 s
[2025-10-11 21:00:07] 2025-10-12 00:59:35,491 | INFO     | . log creation = 0 s
[2025-10-11 21:00:07] 2025-10-12 00:59:35,491 | INFO     | ..............................
[2025-10-11 21:00:07] 2025-10-12 00:59:35,598 | INFO     | 
[2025-10-11 21:00:07] 2025-10-12 00:59:35,598 | INFO     | job summary report
[2025-10-11 21:00:07] 2025-10-12 00:59:35,598 | INFO     | --------------------------------------------------
[2025-10-11 21:00:07] 2025-10-12 00:59:35,598 | INFO     | PanDA job id: 6838773147
[2025-10-11 21:00:07] 2025-10-12 00:59:35,598 | INFO     | task id: 46676269
[2025-10-11 21:00:07] 2025-10-12 00:59:35,598 | INFO     | errors: (none)
[2025-10-11 21:00:07] 2025-10-12 00:59:35,599 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 21:00:07] 2025-10-12 00:59:35,599 | INFO     | pilot state: finished 
[2025-10-11 21:00:07] 2025-10-12 00:59:35,599 | INFO     | transexitcode: 0
[2025-10-11 21:00:07] 2025-10-12 00:59:35,599 | INFO     | exeerrorcode: 0
[2025-10-11 21:00:07] 2025-10-12 00:59:35,599 | INFO     | exeerrordiag: 
[2025-10-11 21:00:07] 2025-10-12 00:59:35,599 | INFO     | exitcode: 0
[2025-10-11 21:00:07] 2025-10-12 00:59:35,599 | INFO     | exitmsg: OK
[2025-10-11 21:00:07] 2025-10-12 00:59:35,599 | INFO     | cpuconsumptiontime: 42449 s
[2025-10-11 21:00:07] 2025-10-12 00:59:35,599 | INFO     | nevents: 400
[2025-10-11 21:00:07] 2025-10-12 00:59:35,599 | INFO     | neventsw: 0
[2025-10-11 21:00:07] 2025-10-12 00:59:35,599 | INFO     | pid: 3322057
[2025-10-11 21:00:07] 2025-10-12 00:59:35,599 | INFO     | pgrp: 3322057
[2025-10-11 21:00:07] 2025-10-12 00:59:35,600 | INFO     | corecount: 8
[2025-10-11 21:00:07] 2025-10-12 00:59:35,600 | INFO     | event service: False
[2025-10-11 21:00:07] 2025-10-12 00:59:35,600 | INFO     | sizes: {0: 2348854, 4: 2349116, 11: 2349144, 5736: 2375876, 5737: 2375875, 5739: 2384957, 5741: 2385141, 5746: 2385335}
[2025-10-11 21:00:07] 2025-10-12 00:59:35,600 | INFO     | --------------------------------------------------
[2025-10-11 21:00:07] 2025-10-12 00:59:35,600 | INFO     | 
[2025-10-11 21:00:07] 2025-10-12 00:59:35,600 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-10-11 21:00:07] 2025-10-12 00:59:35,618 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 21:00:07] 2025-10-12 00:59:35,619 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 21:00:07] 2025-10-12 00:59:35,619 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 21:00:07] 2025-10-12 00:59:35,619 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 21:00:07] 2025-10-12 00:59:35,619 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 21:00:07] 2025-10-12 00:59:35,619 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 21:00:07] 2025-10-12 00:59:35,619 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 21:00:07] 2025-10-12 00:59:35,619 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 21:00:07] 2025-10-12 00:59:35,619 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 21:00:07] 2025-10-12 00:59:35,619 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 21:00:07] 2025-10-12 00:59:35,619 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 21:00:07] 2025-10-12 00:59:35,620 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 21:00:07] 2025-10-12 00:59:35,620 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 21:00:07] 2025-10-12 00:59:35,620 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 21:00:07] 2025-10-12 00:59:35,620 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 21:00:07] 2025-10-12 00:59:35,620 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 21:00:07] 2025-10-12 00:59:35,620 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 21:00:07] 2025-10-12 00:59:35,620 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 21:00:07] 2025-10-12 00:59:35,620 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 21:00:07] 2025-10-12 00:59:35,620 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 21:00:07] 2025-10-12 00:59:35,620 | INFO     | job 6838773147 has completed (purged errors)
[2025-10-11 21:00:07] 2025-10-12 00:59:35,621 | INFO     | overall cleanup function is called
[2025-10-11 21:00:07] 2025-10-12 00:59:36,624 | INFO     | --- collectZombieJob: --- 10, [3322057]
[2025-10-11 21:00:07] 2025-10-12 00:59:36,624 | INFO     | zombie collector waiting for pid 3322057
[2025-10-11 21:00:07] 2025-10-12 00:59:36,625 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 21:00:07] 2025-10-12 00:59:36,625 | INFO     | collected zombie processes
[2025-10-11 21:00:07] 2025-10-12 00:59:36,625 | INFO     | will attempt to kill all subprocesses of pid=3322057
[2025-10-11 21:00:07] 2025-10-12 00:59:36,870 | INFO     | process IDs to be killed: [3322057] (in reverse order)
[2025-10-11 21:00:07] 2025-10-12 00:59:36,930 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 21:00:07] 2025-10-12 00:59:36,931 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 21:00:07] 2025-10-12 00:59:36,937 | INFO     | did not find any defunct processes belonging to 3322057
[2025-10-11 21:00:07] 2025-10-12 00:59:36,943 | INFO     | did not find any defunct processes belonging to 3322057
[2025-10-11 21:00:07] 2025-10-12 00:59:36,943 | INFO     | ready for new job
[2025-10-11 21:00:07] 2025-10-12 00:59:36,944 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 21:00:07] 2025-10-12 00:59:36,945 | INFO     | ***************************************
[2025-10-11 21:00:07] 2025-10-12 00:59:36,945 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 21:00:07] 2025-10-12 00:59:36,945 | INFO     | ***************************************
[2025-10-11 21:00:07] 2025-10-12 00:59:36,946 | INFO     | 
[2025-10-11 21:00:07] 2025-10-12 00:59:36,947 | INFO     | architecture information:
[2025-10-11 21:00:07] 2025-10-12 00:59:36,948 | INFO     | executing command: cat /etc/os-release
[2025-10-11 21:00:07] 2025-10-12 00:59:36,962 | INFO     | cat /etc/os-release:
[2025-10-11 21:00:07] NAME="CentOS Linux"
[2025-10-11 21:00:07] VERSION="7 (Core)"
[2025-10-11 21:00:07] ID="centos"
[2025-10-11 21:00:07] ID_LIKE="rhel fedora"
[2025-10-11 21:00:07] VERSION_ID="7"
[2025-10-11 21:00:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 21:00:07] ANSI_COLOR="0;31"
[2025-10-11 21:00:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 21:00:07] HOME_URL="https://www.centos.org/"
[2025-10-11 21:00:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 21:00:07] 
[2025-10-11 21:00:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 21:00:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 21:00:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 21:00:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 21:00:07] 
[2025-10-11 21:00:07] 2025-10-12 00:59:36,962 | INFO     | ***************************************
[2025-10-11 21:00:07] 2025-10-12 00:59:37,464 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-10-11 21:00:07] 2025-10-12 00:59:37,479 | INFO     | sufficient remaining disk space (51849986048 B)
[2025-10-11 21:00:07] 2025-10-12 00:59:37,479 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 21:00:07] 2025-10-12 00:59:37,479 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 21:00:07] 2025-10-12 00:59:37,480 | INFO     | update_server=False
[2025-10-11 21:00:07] 2025-10-12 00:59:37,480 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 21:00:07] 2025-10-12 00:59:37,480 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 21:00:07] 2025-10-12 00:59:37,480 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 21:00:07] 2025-10-12 00:59:37,483 | INFO     | all data control threads have been joined
[2025-10-11 21:00:07] 2025-10-12 00:59:37,745 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 21:00:07] 2025-10-12 00:59:37,746 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 21:00:07] 2025-10-12 00:59:37,746 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 21:00:07] 2025-10-12 00:59:37,746 | INFO     | will abort loop
[2025-10-11 21:00:07] 2025-10-12 00:59:38,057 | INFO     | all payload control threads have been joined
[2025-10-11 21:00:07] 2025-10-12 00:59:38,480 | INFO     | [job] retrieve thread has finished
[2025-10-11 21:00:07] 2025-10-12 00:59:38,486 | INFO     | [job] queue monitor thread has finished
[2025-10-11 21:00:07] 2025-10-12 00:59:38,488 | INFO     | [data] control thread has finished
[2025-10-11 21:00:07] 2025-10-12 00:59:38,567 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 21:00:07] 2025-10-12 00:59:38,656 | INFO     | [payload] validate_post thread has finished
[2025-10-11 21:00:07] 2025-10-12 00:59:38,749 | INFO     | [job] job monitor thread has finished
[2025-10-11 21:00:07] 2025-10-12 00:59:38,789 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 21:00:07] 2025-10-12 00:59:38,828 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 21:00:07] 2025-10-12 00:59:38,875 | INFO     | all job control threads have been joined
[2025-10-11 21:00:07] 2025-10-12 00:59:39,062 | INFO     | [payload] control thread has finished
[2025-10-11 21:00:07] 2025-10-12 00:59:39,482 | INFO     | [data] copytool_out thread has finished
[2025-10-11 21:00:07] 2025-10-12 00:59:39,684 | INFO     | [job] validate thread has finished
[2025-10-11 21:00:07] 2025-10-12 00:59:39,707 | INFO     | [data] copytool_in thread has finished
[2025-10-11 21:00:07] 2025-10-12 00:59:39,881 | INFO     | [job] control thread has finished
[2025-10-11 21:00:07] 2025-10-12 00:59:39,915 | INFO     | [payload] failed_post thread has finished
[2025-10-11 21:00:07] 2025-10-12 00:59:40,567 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 21:00:07] 2025-10-12 00:59:42,484 | INFO     | [monitor] cgroup control has ended
[2025-10-11 21:00:07] 2025-10-12 00:59:44,572 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 21:00:07] 2025-10-12 00:59:47,509 | INFO     | job.realtimelogging is not enabled
[2025-10-11 21:00:07] 2025-10-12 00:59:48,514 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 21:00:07] 2025-10-12 00:59:49,722 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139665638733632)>', '<ExcThread(monitor, started 139664996419328)>']
[2025-10-11 21:00:07] 2025-10-12 00:59:54,724 | INFO     | all workflow threads have been joined
[2025-10-11 21:00:07] 2025-10-12 00:59:54,724 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 21:00:07] 2025-10-12 00:59:54,725 | INFO     | traces error code: 0
[2025-10-11 21:00:07] 2025-10-12 00:59:54,725 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 21:00:07] 2025-10-12 01:00:07,134 | INFO     | PID=3315733 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 21:00:07] 2025-10-12 01:00:07,135 | INFO     | .. there are 5 such processes running
[2025-10-11 21:00:07] 2025-10-12 01:00:07,136 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 21:00:07] 2025-10-12 01:00:07,136 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 21:00:07] 2025-10-12 01:00:07,136 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 21:00:07] 2025-10-12 01:00:07,136 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 21:00:07] 2025-10-12 01:00:07,136 | INFO     | [monitor] control thread has ended
[2025-10-11 21:00:07] 2025-10-12 01:00:07,246 [wrapper] ==== pilot stdout END ====
[2025-10-11 21:00:07] 2025-10-12 01:00:07,249 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 21:00:07] 2025-10-12 01:00:07,252 [wrapper] pilotpid: 3315733
[2025-10-11 21:00:07] 2025-10-12 01:00:07,254 [wrapper] Pilot exit status: 0
[2025-10-11 21:00:07] 2025-10-12 01:00:07,264 [wrapper] pandaids: 6838773147
[2025-10-11 21:00:07] 2025-10-12 01:00:07,306 [wrapper] cleanup supervisor_pilot 3510365 3315734
[2025-10-11 21:00:07] 2025-10-12 01:00:07,309 [wrapper] Test setup, not cleaning
[2025-10-11 21:00:07] 2025-10-12 01:00:07,312 [wrapper] apfmon messages muted
[2025-10-11 21:00:07] 2025-10-12 01:00:07,314 [wrapper] ==== wrapper stdout END ====
[2025-10-11 21:00:07] 2025-10-12 01:00:07,317 [wrapper] ==== wrapper stderr END ====
[2025-10-11 21:00:07]  *** Error codes and diagnostics ***
[2025-10-11 21:00:07]     "exeErrorCode": 0,
[2025-10-11 21:00:07]     "exeErrorDiag": "",
[2025-10-11 21:00:07]     "pilotErrorCode": 0,
[2025-10-11 21:00:07]     "pilotErrorDiag": "",
[2025-10-11 21:00:07]  *** Listing of results directory ***
[2025-10-11 21:00:07] total 406748
[2025-10-11 21:00:07] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 14:14 pilot3.tar.gz
[2025-10-11 21:00:07] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 14:24 queuedata.json
[2025-10-11 21:00:07] -rwx------. 1 boincer umatlas     36292 Oct 11 14:24 runpilot2-wrapper.sh
[2025-10-11 21:00:07] -rw-r--r--. 1 boincer umatlas       100 Oct 11 19:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 21:00:07] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 19:23 run_atlas
[2025-10-11 21:00:07] -rw-r--r--. 1 boincer umatlas       105 Oct 11 19:23 job.xml
[2025-10-11 21:00:07] -rw-r--r--. 2 boincer umatlas 219220331 Oct 11 19:23 EVNT.46676267._002514.pool.root.1
[2025-10-11 21:00:07] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 19:23 start_atlas.sh
[2025-10-11 21:00:07] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 19:23 shared
[2025-10-11 21:00:07] -rw-r--r--. 2 boincer umatlas    569681 Oct 11 19:23 input.tar.gz
[2025-10-11 21:00:07] -rw-r--r--. 1 boincer umatlas         0 Oct 11 19:23 boinc_lockfile
[2025-10-11 21:00:07] -rw-r--r--. 1 boincer umatlas      2548 Oct 11 19:23 pandaJob.out
[2025-10-11 21:00:07] -rw-------. 1 boincer umatlas    975528 Oct 11 19:23 agis_schedconf.cvmfs.json
[2025-10-11 21:00:07] -rw-------. 1 boincer umatlas   1560580 Oct 11 19:23 agis_ddmendpoints.agis.ALL.json
[2025-10-11 21:00:07] drwx------. 5 boincer umatlas      4096 Oct 11 19:23 pilot3
[2025-10-11 21:00:07] -rw-r--r--. 1 boincer umatlas      6659 Oct 11 20:55 init_data.xml
[2025-10-11 21:00:07] -rw-------. 1 boincer umatlas 191029273 Oct 11 20:58 HITS.46676269._062577.pool.root.1
[2025-10-11 21:00:07] -rw-r--r--. 1 boincer umatlas       529 Oct 11 20:58 boinc_task_state.xml
[2025-10-11 21:00:07] -rw-------. 1 boincer umatlas      1035 Oct 11 20:59 memory_monitor_summary.json
[2025-10-11 21:00:07] -rw-------. 1 boincer umatlas    331476 Oct 11 20:59 log.46676269._062577.job.log.tgz.1
[2025-10-11 21:00:07] -rw-------. 1 boincer umatlas      7820 Oct 11 20:59 heartbeat.json
[2025-10-11 21:00:07] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 21:00 boinc_mmap_file
[2025-10-11 21:00:07] -rw-r--r--. 1 boincer umatlas        27 Oct 11 21:00 wrapper_checkpoint.txt
[2025-10-11 21:00:07] -rw-------. 1 boincer umatlas        95 Oct 11 21:00 pilot_heartbeat.json
[2025-10-11 21:00:07] -rw-------. 1 boincer umatlas       822 Oct 11 21:00 pilotlog.txt
[2025-10-11 21:00:07] -rw-------. 1 boincer umatlas    845480 Oct 11 21:00 log.46676269._062577.job.log.1
[2025-10-11 21:00:07] -rw-------. 1 boincer umatlas       357 Oct 11 21:00 output.list
[2025-10-11 21:00:07] -rw-r--r--. 1 boincer umatlas       620 Oct 11 21:00 runtime_log
[2025-10-11 21:00:07] -rw-------. 1 boincer umatlas   1198080 Oct 11 21:00 result.tar.gz
[2025-10-11 21:00:07] -rw-r--r--. 1 boincer umatlas      8703 Oct 11 21:00 runtime_log.err
[2025-10-11 21:00:07] -rw-------. 1 boincer umatlas       652 Oct 11 21:00 opQNDmpRtR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkEhNDmrQAYLo.diag
[2025-10-11 21:00:07] -rw-r--r--. 1 boincer umatlas     21976 Oct 11 21:00 stderr.txt
[2025-10-11 21:00:07] HITS file was successfully produced:
[2025-10-11 21:00:07] -rw-------. 1 boincer umatlas 191029273 Oct 11 20:58 shared/HITS.pool.root.1
[2025-10-11 21:00:07]  *** Contents of shared directory: ***
[2025-10-11 21:00:07] total 402396
[2025-10-11 21:00:07] -rw-r--r--. 2 boincer umatlas 219220331 Oct 11 19:23 ATLAS.root_0
[2025-10-11 21:00:07] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 19:23 start_atlas.sh
[2025-10-11 21:00:07] -rw-r--r--. 2 boincer umatlas    569681 Oct 11 19:23 input.tar.gz
[2025-10-11 21:00:07] -rw-------. 1 boincer umatlas 191029273 Oct 11 20:58 HITS.pool.root.1
[2025-10-11 21:00:07] -rw-------. 1 boincer umatlas   1198080 Oct 11 21:00 result.tar.gz
21:00:09 (3312074): run_atlas exited; CPU time 42546.704393
21:00:09 (3312074): called boinc_finish(0)

</stderr_txt>
]]>

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