Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:46:17 (571826): wrapper (7.7.26015): starting
15:46:17 (571826): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 15:46:17] Arguments: --nthreads 12
[2025-10-12 15:46:17] Threads: 12
[2025-10-12 15:46:17] Checking for CVMFS
[2025-10-12 15:46:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 15:46:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 15:46:19] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 15:46:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 15:46:19] 2.13.2.0 572020 0 31032 151621 4 1 2584981 4097025 0 130560 0 0 0.000 1291 11324 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-10-12 15:46:19] CVMFS is ok
[2025-10-12 15:46:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 15:46:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 15:46:19] Further information can be found at the LHC@home message board.
[2025-10-12 15:46:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 15:46:19] Checking for apptainer binary...
[2025-10-12 15:46:19] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-10-12 15:46:19] apptainer is not installed, using version from CVMFS
[2025-10-12 15:46:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 15:46:20] pckelar8.cern.ch
[2025-10-12 15:46:20] apptainer works
[2025-10-12 15:46:20] Set ATHENA_PROC_NUMBER=12
[2025-10-12 15:46:20] Set ATHENA_CORE_NUMBER=12
[2025-10-12 15:46:20] Starting ATLAS job with PandaID=6838772248
[2025-10-12 15:46:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 16:57:41]  *** The last 200 lines of the pilot log: ***
[2025-10-12 16:57:41]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6838772248/log.46676269._062309.job.log.tgz.1
[2025-10-12 16:57:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/f9/log.46676269._062309.job.log.tgz.1
[2025-10-12 16:57:41]  workdir=None
[2025-10-12 16:57:41] ]
[2025-10-12 16:57:41] 2025-10-12 14:56:51,997 | INFO     | transferring file log.46676269._062309.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6838772248/log.46676269._062309.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 16:57:41] 2025-10-12 14:56:51,997 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6838772248/log.46676269._062309.job.log.tgz.1 /var/lib/boinc/slots/0/log.46676269._062309.job
[2025-10-12 16:57:41] 2025-10-12 14:56:52,012 | INFO     | adding to output.list: log.46676269._062309.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/f9/log.46676269._062309.job.log.tg
[2025-10-12 16:57:41] 2025-10-12 14:56:52,012 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 16:57:41] 2025-10-12 14:56:52,012 | INFO     | summary of transferred files:
[2025-10-12 16:57:41] 2025-10-12 14:56:52,013 | INFO     |  -- lfn=log.46676269._062309.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 16:57:41] 2025-10-12 14:56:52,013 | INFO     | stage-out finished correctly
[2025-10-12 16:57:41] 2025-10-12 14:56:52,845 | INFO     | time since job start (4223s) is within the limit (172800.0s)
[2025-10-12 16:57:41] 2025-10-12 14:56:54,639 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 16:57:41] 2025-10-12 14:56:54,850 | INFO     | time since job start (4225s) is within the limit (172800.0s)
[2025-10-12 16:57:41] 2025-10-12 14:56:55,630 | WARNING  | process 583374 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 16:57:41] 2025-10-12 14:56:55,631 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6838772248/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 16:57:41] 2025-10-12 14:56:55,701 | INFO     | number of running child processes to parent process 583374: 1
[2025-10-12 16:57:41] 2025-10-12 14:56:55,701 | INFO     | maximum number of monitored processes: 6
[2025-10-12 16:57:41] 2025-10-12 14:56:56,856 | INFO     | time since job start (4227s) is within the limit (172800.0s)
[2025-10-12 16:57:41] 2025-10-12 14:56:57,265 | INFO     | job 6838772248 has state=finished
[2025-10-12 16:57:41] 2025-10-12 14:56:57,265 | INFO     | preparing for final server update for job 6838772248 in state='finished'
[2025-10-12 16:57:41] 2025-10-12 14:56:57,266 | INFO     | this job has now completed (state=finished)
[2025-10-12 16:57:41] 2025-10-12 14:56:57,266 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 16:57:41] 2025-10-12 14:56:57,266 | INFO     | log transfer has been attempted: DONE
[2025-10-12 16:57:41] 2025-10-12 14:56:57,266 | INFO     | job 6838772248 has finished - writing final server update
[2025-10-12 16:57:41] 2025-10-12 14:56:57,266 | INFO     | total number of processed events: 400 (read)
[2025-10-12 16:57:41] 2025-10-12 14:56:57,267 | INFO     | executing command: lscpu
[2025-10-12 16:57:41] 2025-10-12 14:56:57,288 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 16:57:41] 2025-10-12 14:56:58,204 | INFO     | monitor loop #322: job 0:6838772248 is in state 'finished'
[2025-10-12 16:57:41] 2025-10-12 14:56:58,204 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:57:41] 2025-10-12 14:56:58,861 | INFO     | time since job start (4229s) is within the limit (172800.0s)
[2025-10-12 16:57:41] 2025-10-12 14:57:00,707 | INFO     | monitor loop #323: job 0:6838772248 is in state 'finished'
[2025-10-12 16:57:41] 2025-10-12 14:57:00,707 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:57:41] 2025-10-12 14:57:00,866 | INFO     | time since job start (4231s) is within the limit (172800.0s)
[2025-10-12 16:57:41] 2025-10-12 14:57:00,867 | INFO     | 4232s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-12 16:57:41] 2025-10-12 14:57:01,849 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 16:57:41] 2025-10-12 14:57:01,851 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 2163.7585833333333
[2025-10-12 16:57:41] 2025-10-12 14:57:01,852 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6838772248/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 16:57:41] 2025-10-12 14:57:01,853 | INFO     | extracted standard info from prmon json
[2025-10-12 16:57:41] 2025-10-12 14:57:01,853 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 16:57:41] 2025-10-12 14:57:01,853 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 16:57:41] 2025-10-12 14:57:01,853 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 16:57:41] 2025-10-12 14:57:01,854 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 16:57:41] 2025-10-12 14:57:01,855 | INFO     | fitting pss+swap vs Time
[2025-10-12 16:57:41] 2025-10-12 14:57:01,855 | INFO     | sum of square deviations: 73882315.5
[2025-10-12 16:57:41] 2025-10-12 14:57:01,855 | INFO     | sum of deviations: -7738070972.5
[2025-10-12 16:57:41] 2025-10-12 14:57:01,855 | INFO     | mean x: 1760278980.5
[2025-10-12 16:57:41] 2025-10-12 14:57:01,856 | INFO     | mean y: 2822786.6612903224
[2025-10-12 16:57:41] 2025-10-12 14:57:01,856 | INFO     | -- intersect: 184365800453.60977
[2025-10-12 16:57:41] 2025-10-12 14:57:01,856 | INFO     | intersect: 184365800453.60977
[2025-10-12 16:57:41] 2025-10-12 14:57:01,856 | INFO     | chi2: 0.11165381668860237
[2025-10-12 16:57:41] 2025-10-12 14:57:01,856 | INFO     | -- intersect: 184365800453.60977
[2025-10-12 16:57:41] 2025-10-12 14:57:01,856 | INFO     | current memory leak: -104.74 B/s (using 62 data points, chi2=0.11)
[2025-10-12 16:57:41] 2025-10-12 14:57:01,856 | INFO     | could have reported an average CPU frequency of 2709 MHz (6 samples)
[2025-10-12 16:57:41] 2025-10-12 14:57:01,857 | INFO     | ..............................
[2025-10-12 16:57:41] 2025-10-12 14:57:01,857 | INFO     | . Timing measurements:
[2025-10-12 16:57:41] 2025-10-12 14:57:01,857 | INFO     | . get job = 0 s
[2025-10-12 16:57:41] 2025-10-12 14:57:01,857 | INFO     | . initial setup = 1 s
[2025-10-12 16:57:41] 2025-10-12 14:57:01,857 | INFO     | . payload setup = 6 s
[2025-10-12 16:57:41] 2025-10-12 14:57:01,857 | INFO     | . stage-in = 0 s
[2025-10-12 16:57:41] 2025-10-12 14:57:01,857 | INFO     | . payload execution = 4195 s
[2025-10-12 16:57:41] 2025-10-12 14:57:01,857 | INFO     | . stage-out = 0 s
[2025-10-12 16:57:41] 2025-10-12 14:57:01,857 | INFO     | . log creation = 0 s
[2025-10-12 16:57:41] 2025-10-12 14:57:01,857 | INFO     | ..............................
[2025-10-12 16:57:41] 2025-10-12 14:57:01,925 | INFO     | 
[2025-10-12 16:57:41] 2025-10-12 14:57:01,925 | INFO     | job summary report
[2025-10-12 16:57:41] 2025-10-12 14:57:01,925 | INFO     | --------------------------------------------------
[2025-10-12 16:57:41] 2025-10-12 14:57:01,925 | INFO     | PanDA job id: 6838772248
[2025-10-12 16:57:41] 2025-10-12 14:57:01,925 | INFO     | task id: 46676269
[2025-10-12 16:57:41] 2025-10-12 14:57:01,926 | INFO     | errors: (none)
[2025-10-12 16:57:41] 2025-10-12 14:57:01,926 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 16:57:41] 2025-10-12 14:57:01,926 | INFO     | pilot state: finished 
[2025-10-12 16:57:41] 2025-10-12 14:57:01,926 | INFO     | transexitcode: 0
[2025-10-12 16:57:41] 2025-10-12 14:57:01,926 | INFO     | exeerrorcode: 0
[2025-10-12 16:57:41] 2025-10-12 14:57:01,927 | INFO     | exeerrordiag: 
[2025-10-12 16:57:41] 2025-10-12 14:57:01,927 | INFO     | exitcode: 0
[2025-10-12 16:57:41] 2025-10-12 14:57:01,927 | INFO     | exitmsg: OK
[2025-10-12 16:57:41] 2025-10-12 14:57:01,927 | INFO     | cpuconsumptiontime: 45944 s
[2025-10-12 16:57:41] 2025-10-12 14:57:01,927 | INFO     | nevents: 400
[2025-10-12 16:57:41] 2025-10-12 14:57:01,928 | INFO     | neventsw: 0
[2025-10-12 16:57:41] 2025-10-12 14:57:01,928 | INFO     | pid: 583374
[2025-10-12 16:57:41] 2025-10-12 14:57:01,928 | INFO     | pgrp: 583374
[2025-10-12 16:57:41] 2025-10-12 14:57:01,928 | INFO     | corecount: 12
[2025-10-12 16:57:41] 2025-10-12 14:57:01,928 | INFO     | event service: False
[2025-10-12 16:57:41] 2025-10-12 14:57:01,928 | INFO     | sizes: {0: 2348635, 1: 2348834, 5: 2349096, 11: 2349152, 4206: 2375278, 4208: 2384276, 4210: 2384460, 4218: 2384654}
[2025-10-12 16:57:41] 2025-10-12 14:57:01,928 | INFO     | --------------------------------------------------
[2025-10-12 16:57:41] 2025-10-12 14:57:01,928 | INFO     | 
[2025-10-12 16:57:41] 2025-10-12 14:57:01,929 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-12 16:57:41] 2025-10-12 14:57:01,946 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 16:57:41] 2025-10-12 14:57:01,946 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 16:57:41] 2025-10-12 14:57:01,947 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 16:57:41] 2025-10-12 14:57:01,947 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 16:57:41] 2025-10-12 14:57:01,947 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 16:57:41] 2025-10-12 14:57:01,947 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 16:57:41] 2025-10-12 14:57:01,947 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 16:57:41] 2025-10-12 14:57:01,947 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 16:57:41] 2025-10-12 14:57:01,947 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 16:57:41] 2025-10-12 14:57:01,948 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 16:57:41] 2025-10-12 14:57:01,948 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 16:57:41] 2025-10-12 14:57:01,948 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 16:57:41] 2025-10-12 14:57:01,948 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 16:57:41] 2025-10-12 14:57:01,948 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 16:57:41] 2025-10-12 14:57:01,948 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 16:57:41] 2025-10-12 14:57:01,948 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 16:57:41] 2025-10-12 14:57:01,948 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 16:57:41] 2025-10-12 14:57:01,949 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 16:57:41] 2025-10-12 14:57:01,949 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 16:57:41] 2025-10-12 14:57:01,949 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 16:57:41] 2025-10-12 14:57:01,949 | INFO     | job 6838772248 has completed (purged errors)
[2025-10-12 16:57:41] 2025-10-12 14:57:01,949 | INFO     | overall cleanup function is called
[2025-10-12 16:57:41] 2025-10-12 14:57:02,031 | INFO     | PID=576096 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 16:57:41] 2025-10-12 14:57:02,957 | INFO     | --- collectZombieJob: --- 10, [583374]
[2025-10-12 16:57:41] 2025-10-12 14:57:02,958 | INFO     | zombie collector waiting for pid 583374
[2025-10-12 16:57:41] 2025-10-12 14:57:02,959 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 16:57:41] 2025-10-12 14:57:02,959 | INFO     | collected zombie processes
[2025-10-12 16:57:41] 2025-10-12 14:57:02,959 | INFO     | will attempt to kill all subprocesses of pid=583374
[2025-10-12 16:57:41] 2025-10-12 14:57:03,031 | INFO     | process IDs to be killed: [583374] (in reverse order)
[2025-10-12 16:57:41] 2025-10-12 14:57:03,069 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 16:57:41] 2025-10-12 14:57:03,069 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 16:57:41] 2025-10-12 14:57:03,071 | INFO     | did not find any defunct processes belonging to 583374
[2025-10-12 16:57:41] 2025-10-12 14:57:03,073 | INFO     | did not find any defunct processes belonging to 583374
[2025-10-12 16:57:41] 2025-10-12 14:57:03,073 | INFO     | ready for new job
[2025-10-12 16:57:41] 2025-10-12 14:57:03,073 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 16:57:41] 2025-10-12 14:57:03,075 | INFO     | ***************************************
[2025-10-12 16:57:41] 2025-10-12 14:57:03,075 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 16:57:41] 2025-10-12 14:57:03,075 | INFO     | ***************************************
[2025-10-12 16:57:41] 2025-10-12 14:57:03,075 | INFO     | 
[2025-10-12 16:57:41] 2025-10-12 14:57:03,075 | INFO     | architecture information:
[2025-10-12 16:57:41] 2025-10-12 14:57:03,076 | INFO     | executing command: cat /etc/os-release
[2025-10-12 16:57:41] 2025-10-12 14:57:03,087 | INFO     | cat /etc/os-release:
[2025-10-12 16:57:41] NAME="CentOS Linux"
[2025-10-12 16:57:41] VERSION="7 (Core)"
[2025-10-12 16:57:41] ID="centos"
[2025-10-12 16:57:41] ID_LIKE="rhel fedora"
[2025-10-12 16:57:41] VERSION_ID="7"
[2025-10-12 16:57:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 16:57:41] ANSI_COLOR="0;31"
[2025-10-12 16:57:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 16:57:41] HOME_URL="https://www.centos.org/"
[2025-10-12 16:57:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 16:57:41] 
[2025-10-12 16:57:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 16:57:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 16:57:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 16:57:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 16:57:41] 
[2025-10-12 16:57:41] 2025-10-12 14:57:03,087 | INFO     | ***************************************
[2025-10-12 16:57:41] 2025-10-12 14:57:03,590 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-12 16:57:41] 2025-10-12 14:57:03,604 | INFO     | sufficient remaining disk space (1716763230208 B)
[2025-10-12 16:57:41] 2025-10-12 14:57:03,604 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 16:57:41] 2025-10-12 14:57:03,604 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 16:57:41] 2025-10-12 14:57:03,604 | INFO     | update_server=False
[2025-10-12 16:57:41] 2025-10-12 14:57:03,605 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 16:57:41] 2025-10-12 14:57:03,605 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:57:41] 2025-10-12 14:57:04,215 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:57:41] 2025-10-12 14:57:04,215 | INFO     | aborting loop
[2025-10-12 16:57:41] 2025-10-12 14:57:04,511 | INFO     | all job control threads have been joined
[2025-10-12 16:57:41] 2025-10-12 14:57:04,577 | INFO     | all data control threads have been joined
[2025-10-12 16:57:41] 2025-10-12 14:57:04,610 | INFO     | [job] retrieve thread has finished
[2025-10-12 16:57:41] 2025-10-12 14:57:04,610 | INFO     | [job] queue monitor thread has finished
[2025-10-12 16:57:41] 2025-10-12 14:57:04,898 | INFO     | all payload control threads have been joined
[2025-10-12 16:57:41] 2025-10-12 14:57:05,061 | INFO     | [data] copytool_in thread has finished
[2025-10-12 16:57:41] 2025-10-12 14:57:05,097 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 16:57:41] 2025-10-12 14:57:05,110 | INFO     | [payload] failed_post thread has finished
[2025-10-12 16:57:41] 2025-10-12 14:57:05,134 | INFO     | [job] validate thread has finished
[2025-10-12 16:57:41] 2025-10-12 14:57:05,153 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 16:57:41] 2025-10-12 14:57:05,211 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 16:57:41] 2025-10-12 14:57:05,220 | INFO     | [job] job monitor thread has finished
[2025-10-12 16:57:41] 2025-10-12 14:57:05,358 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 16:57:41] 2025-10-12 14:57:05,516 | INFO     | [job] control thread has finished
[2025-10-12 16:57:41] 2025-10-12 14:57:05,582 | INFO     | [data] control thread has finished
[2025-10-12 16:57:41] 2025-10-12 14:57:05,735 | INFO     | [payload] validate_post thread has finished
[2025-10-12 16:57:41] 2025-10-12 14:57:05,902 | INFO     | [payload] control thread has finished
[2025-10-12 16:57:41] 2025-10-12 14:57:06,076 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 16:57:41] 2025-10-12 14:57:07,102 | INFO     | [data] copytool_out thread has finished
[2025-10-12 16:57:41] 2025-10-12 14:57:09,217 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 16:57:41] 2025-10-12 14:57:14,526 | INFO     | job.realtimelogging is not enabled
[2025-10-12 16:57:41] 2025-10-12 14:57:15,531 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 16:57:41] 2025-10-12 14:57:34,209 | INFO     | PID=576096 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 16:57:41] 2025-10-12 14:57:34,210 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 16:57:41] 2025-10-12 14:57:34,210 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 16:57:41] 2025-10-12 14:57:34,210 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 16:57:41] 2025-10-12 14:57:35,605 | INFO     | [monitor] cgroup control has ended
[2025-10-12 16:57:41] 2025-10-12 14:57:36,043 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140238385727296)>', '<ExcThread(monitor, started 140237854467840)>']
[2025-10-12 16:57:41] 2025-10-12 14:57:36,220 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 16:57:41] 2025-10-12 14:57:36,220 | INFO     | [monitor] control thread has ended
[2025-10-12 16:57:41] 2025-10-12 14:57:41,068 | INFO     | all workflow threads have been joined
[2025-10-12 16:57:41] 2025-10-12 14:57:41,068 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 16:57:41] 2025-10-12 14:57:41,068 | INFO     | traces error code: 0
[2025-10-12 16:57:41] 2025-10-12 14:57:41,068 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 16:57:41] 2025-10-12 14:57:41,147 [wrapper] ==== pilot stdout END ====
[2025-10-12 16:57:41] 2025-10-12 14:57:41,150 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 16:57:41] 2025-10-12 14:57:41,153 [wrapper] pilotpid: 576096
[2025-10-12 16:57:41] 2025-10-12 14:57:41,155 [wrapper] Pilot exit status: 0
[2025-10-12 16:57:41] 2025-10-12 14:57:41,164 [wrapper] pandaids: 6838772248
[2025-10-12 16:57:41] 2025-10-12 14:57:41,184 [wrapper] cleanup supervisor_pilot  595660 576097
[2025-10-12 16:57:41] 2025-10-12 14:57:41,186 [wrapper] Test setup, not cleaning
[2025-10-12 16:57:41] 2025-10-12 14:57:41,188 [wrapper] apfmon messages muted
[2025-10-12 16:57:41] 2025-10-12 14:57:41,190 [wrapper] ==== wrapper stdout END ====
[2025-10-12 16:57:41] 2025-10-12 14:57:41,192 [wrapper] ==== wrapper stderr END ====
[2025-10-12 16:57:41]  *** Error codes and diagnostics ***
[2025-10-12 16:57:41]     "exeErrorCode": 0,
[2025-10-12 16:57:41]     "exeErrorDiag": "",
[2025-10-12 16:57:41]     "pilotErrorCode": 0,
[2025-10-12 16:57:41]     "pilotErrorDiag": "",
[2025-10-12 16:57:41]  *** Listing of results directory ***
[2025-10-12 16:57:41] total 412948
[2025-10-12 16:57:41] -rw-r--r-- 1 boinc boinc      5112 Oct 11 20:09 queuedata.json
[2025-10-12 16:57:41] -rw-r--r-- 1 boinc boinc    557409 Oct 11 20:10 pilot3.tar.gz
[2025-10-12 16:57:41] -rwx------ 1 boinc boinc     36292 Oct 11 20:11 runpilot2-wrapper.sh
[2025-10-12 16:57:41] -rw-r--r-- 1 boinc boinc       100 Oct 12 15:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 16:57:41] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 15:46 run_atlas
[2025-10-12 16:57:41] -rw-r--r-- 1 boinc boinc       105 Oct 12 15:46 job.xml
[2025-10-12 16:57:41] -rw-r--r-- 1 boinc boinc      6251 Oct 12 15:46 init_data.xml
[2025-10-12 16:57:41] -rw-r--r-- 2 boinc boinc 220581203 Oct 12 15:46 EVNT.46676267._002501.pool.root.1
[2025-10-12 16:57:41] -rw-r--r-- 2 boinc boinc     15120 Oct 12 15:46 start_atlas.sh
[2025-10-12 16:57:41] drwxrwx--x 2 boinc boinc      4096 Oct 12 15:46 shared
[2025-10-12 16:57:41] -rw-r--r-- 2 boinc boinc    569681 Oct 12 15:46 input.tar.gz
[2025-10-12 16:57:41] -rw-r--r-- 1 boinc boinc         0 Oct 12 15:46 boinc_lockfile
[2025-10-12 16:57:41] -rw-r--r-- 1 boinc boinc      2549 Oct 12 15:46 pandaJob.out
[2025-10-12 16:57:41] -rw------- 1 boinc boinc    975528 Oct 12 15:46 agis_schedconf.cvmfs.json
[2025-10-12 16:57:41] -rw------- 1 boinc boinc   1560580 Oct 12 15:46 agis_ddmendpoints.agis.ALL.json
[2025-10-12 16:57:41] drwx------ 5 boinc boinc      4096 Oct 12 15:46 pilot3
[2025-10-12 16:57:41] -rw------- 1 boinc boinc 196368133 Oct 12 16:56 HITS.46676269._062309.pool.root.1
[2025-10-12 16:57:41] -rw------- 1 boinc boinc      1034 Oct 12 16:56 memory_monitor_summary.json
[2025-10-12 16:57:41] -rw-r--r-- 1 boinc boinc       529 Oct 12 16:56 boinc_task_state.xml
[2025-10-12 16:57:41] -rw------- 1 boinc boinc    375736 Oct 12 16:56 log.46676269._062309.job.log.tgz.1
[2025-10-12 16:57:41] -rw------- 1 boinc boinc        95 Oct 12 16:56 pilot_heartbeat.json
[2025-10-12 16:57:41] -rw------- 1 boinc boinc      7793 Oct 12 16:57 heartbeat.json
[2025-10-12 16:57:41] -rw-r--r-- 1 boinc boinc      8192 Oct 12 16:57 boinc_mmap_file
[2025-10-12 16:57:41] -rw-r--r-- 1 boinc boinc        27 Oct 12 16:57 wrapper_checkpoint.txt
[2025-10-12 16:57:41] -rw------- 1 boinc boinc      4821 Oct 12 16:57 pilotlog.txt
[2025-10-12 16:57:41] -rw------- 1 boinc boinc    625163 Oct 12 16:57 log.46676269._062309.job.log.1
[2025-10-12 16:57:41] -rw------- 1 boinc boinc       357 Oct 12 16:57 output.list
[2025-10-12 16:57:41] -rw-r--r-- 1 boinc boinc       620 Oct 12 16:57 runtime_log
[2025-10-12 16:57:41] -rw------- 1 boinc boinc   1024000 Oct 12 16:57 result.tar.gz
[2025-10-12 16:57:41] -rw-r--r-- 1 boinc boinc      8727 Oct 12 16:57 runtime_log.err
[2025-10-12 16:57:41] -rw------- 1 boinc boinc       658 Oct 12 16:57 fOcNDmvEtR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmyAhNDmHGdHLm.diag
[2025-10-12 16:57:41] -rw-r--r-- 1 boinc boinc     22480 Oct 12 16:57 stderr.txt
[2025-10-12 16:57:41] HITS file was successfully produced:
[2025-10-12 16:57:41] -rw------- 1 boinc boinc 196368133 Oct 12 16:56 shared/HITS.pool.root.1
[2025-10-12 16:57:41]  *** Contents of shared directory: ***
[2025-10-12 16:57:41] total 408764
[2025-10-12 16:57:41] -rw-r--r-- 2 boinc boinc 220581203 Oct 12 15:46 ATLAS.root_0
[2025-10-12 16:57:41] -rw-r--r-- 2 boinc boinc     15120 Oct 12 15:46 start_atlas.sh
[2025-10-12 16:57:41] -rw-r--r-- 2 boinc boinc    569681 Oct 12 15:46 input.tar.gz
[2025-10-12 16:57:41] -rw------- 1 boinc boinc 196368133 Oct 12 16:56 HITS.pool.root.1
[2025-10-12 16:57:41] -rw------- 1 boinc boinc   1024000 Oct 12 16:57 result.tar.gz
16:57:42 (571826): run_atlas exited; CPU time 45940.403317
16:57:42 (571826): called boinc_finish(0)

</stderr_txt>
]]>

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