Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:13:07 (3286973): wrapper (7.7.26015): starting
11:13:07 (3286973): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 11:13:07] Arguments: --nthreads 4
[2025-10-12 11:13:07] Threads: 4
[2025-10-12 11:13:07] Checking for CVMFS
[2025-10-12 11:13:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:13:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:13:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:13:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:13:07] 2.9.2.0 1879657 4035 97016 151613 2 57 26648007 36864001 0 130560 0 3666546 99.992 135109 781 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 11:13:07] CVMFS is ok
[2025-10-12 11:13:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:13:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:13:07] Further information can be found at the LHC@home message board.
[2025-10-12 11:13:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:13:07] Checking for apptainer binary...
[2025-10-12 11:13:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:13:07] Running /usr/bin/apptainer --version
[2025-10-12 11:13:07] apptainer version 1.4.1-1.1
[2025-10-12 11:13:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:13:07] iaxoA393
[2025-10-12 11:13:07] apptainer works
[2025-10-12 11:13:07] Set ATHENA_PROC_NUMBER=4
[2025-10-12 11:13:07] Set ATHENA_CORE_NUMBER=4
[2025-10-12 11:13:07] Starting ATLAS job with PandaID=6837667285
[2025-10-12 11:13:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 12:25:31]  *** The last 200 lines of the pilot log: ***
[2025-10-12 12:25:31] 2025-10-12 10:25:00,671 | INFO     | collected zombie processes
[2025-10-12 12:25:31] 2025-10-12 10:25:00,671 | INFO     | will attempt to kill all subprocesses of pid=3297307
[2025-10-12 12:25:31] 2025-10-12 10:25:00,713 | INFO     | process IDs to be killed: [3297307] (in reverse order)
[2025-10-12 12:25:31] 2025-10-12 10:25:00,744 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 12:25:31] 2025-10-12 10:25:00,745 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 12:25:31] 2025-10-12 10:25:00,746 | INFO     | did not find any defunct processes belonging to 3297307
[2025-10-12 12:25:31] 2025-10-12 10:25:00,748 | INFO     | did not find any defunct processes belonging to 3297307
[2025-10-12 12:25:31] 2025-10-12 10:25:00,748 | INFO     | ready for new job
[2025-10-12 12:25:31] 2025-10-12 10:25:00,748 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 12:25:31] 2025-10-12 10:25:00,749 | INFO     | ***************************************
[2025-10-12 12:25:31] 2025-10-12 10:25:00,749 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 12:25:31] 2025-10-12 10:25:00,749 | INFO     | ***************************************
[2025-10-12 12:25:31] 2025-10-12 10:25:00,749 | INFO     | 
[2025-10-12 12:25:31] 2025-10-12 10:25:00,749 | INFO     | architecture information:
[2025-10-12 12:25:31] 2025-10-12 10:25:00,749 | INFO     | executing command: cat /etc/os-release
[2025-10-12 12:25:31] 2025-10-12 10:25:00,762 | INFO     | cat /etc/os-release:
[2025-10-12 12:25:31] NAME="CentOS Linux"
[2025-10-12 12:25:31] VERSION="7 (Core)"
[2025-10-12 12:25:31] ID="centos"
[2025-10-12 12:25:31] ID_LIKE="rhel fedora"
[2025-10-12 12:25:31] VERSION_ID="7"
[2025-10-12 12:25:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 12:25:31] ANSI_COLOR="0;31"
[2025-10-12 12:25:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 12:25:31] HOME_URL="https://www.centos.org/"
[2025-10-12 12:25:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 12:25:31] 
[2025-10-12 12:25:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 12:25:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 12:25:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 12:25:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 12:25:31] 
[2025-10-12 12:25:31] 2025-10-12 10:25:00,762 | INFO     | ***************************************
[2025-10-12 12:25:31] 2025-10-12 10:25:01,266 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 12:25:31] 2025-10-12 10:25:01,282 | INFO     | sufficient remaining disk space (332985794560 B)
[2025-10-12 12:25:31] 2025-10-12 10:25:01,282 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 12:25:31] 2025-10-12 10:25:01,282 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 12:25:31] 2025-10-12 10:25:01,282 | INFO     | update_server=False
[2025-10-12 12:25:31] 2025-10-12 10:25:01,282 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 12:25:31] 2025-10-12 10:25:01,283 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:25:31] 2025-10-12 10:25:01,557 | INFO     | all payload control threads have been joined
[2025-10-12 12:25:31] 2025-10-12 10:25:01,628 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:25:31] 2025-10-12 10:25:01,628 | INFO     | aborting loop
[2025-10-12 12:25:31] 2025-10-12 10:25:01,816 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 12:25:31] 2025-10-12 10:25:01,825 | INFO     | all data control threads have been joined
[2025-10-12 12:25:31] 2025-10-12 10:25:02,229 | INFO     | all job control threads have been joined
[2025-10-12 12:25:31] 2025-10-12 10:25:02,284 | INFO     | [job] retrieve thread has finished
[2025-10-12 12:25:31] 2025-10-12 10:25:02,288 | INFO     | [job] queue monitor thread has finished
[2025-10-12 12:25:31] 2025-10-12 10:25:02,563 | INFO     | [payload] control thread has finished
[2025-10-12 12:25:31] 2025-10-12 10:25:02,634 | INFO     | [job] job monitor thread has finished
[2025-10-12 12:25:31] 2025-10-12 10:25:02,776 | INFO     | [payload] validate_post thread has finished
[2025-10-12 12:25:31] 2025-10-12 10:25:02,831 | INFO     | [data] control thread has finished
[2025-10-12 12:25:31] 2025-10-12 10:25:02,953 | INFO     | [job] validate thread has finished
[2025-10-12 12:25:31] 2025-10-12 10:25:03,057 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 12:25:31] 2025-10-12 10:25:03,161 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 12:25:31] 2025-10-12 10:25:03,235 | INFO     | [job] control thread has finished
[2025-10-12 12:25:31] 2025-10-12 10:25:03,268 | INFO     | [data] copytool_in thread has finished
[2025-10-12 12:25:31] 2025-10-12 10:25:03,562 | INFO     | [payload] failed_post thread has finished
[2025-10-12 12:25:31] 2025-10-12 10:25:03,644 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 12:25:31] 2025-10-12 10:25:03,748 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 12:25:31] 2025-10-12 10:25:03,822 | INFO     | [data] copytool_out thread has finished
[2025-10-12 12:25:31] 2025-10-12 10:25:04,353 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 12:25:31] 2025-10-12 10:25:08,360 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 12:25:31] 2025-10-12 10:25:19,405 | INFO     | [monitor] cgroup control has ended
[2025-10-12 12:25:31] 2025-10-12 10:25:19,659 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139652938446656)>', '<ExcThread(monitor, started 139651851474688)>']
[2025-10-12 12:25:31] 2025-10-12 10:25:24,685 | INFO     | all workflow threads have been joined
[2025-10-12 12:25:31] 2025-10-12 10:25:24,685 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 12:25:31] 2025-10-12 10:25:24,686 | INFO     | traces error code: 0
[2025-10-12 12:25:31] 2025-10-12 10:25:24,686 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 12:25:31] 2025-10-12 10:25:31,051 | INFO     | PID=3290755 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 12:25:31] 2025-10-12 10:25:31,052 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 12:25:31] 2025-10-12 10:25:31,052 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 12:25:31] 2025-10-12 10:25:31,052 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 12:25:31] 2025-10-12 10:25:31,052 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 12:25:31] 2025-10-12 10:25:31,052 | INFO     | [monitor] control thread has ended
[2025-10-12 12:25:31] 2025-10-12 10:25:31,116 [wrapper] ==== pilot stdout END ====
[2025-10-12 12:25:31] 2025-10-12 10:25:31,120 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 12:25:31] 2025-10-12 10:25:31,124 [wrapper] pilotpid: 3290755
[2025-10-12 12:25:31] 2025-10-12 10:25:31,127 [wrapper] Pilot exit status: 0
[2025-10-12 12:25:31] 2025-10-12 10:25:31,138 [wrapper] pandaids: 6837667285
[2025-10-12 12:25:31] 2025-10-12 10:25:31,159 [wrapper] cleanup supervisor_pilot 3307912 3290756
[2025-10-12 12:25:31] 2025-10-12 10:25:31,163 [wrapper] Test setup, not cleaning
[2025-10-12 12:25:31] 2025-10-12 10:25:31,166 [wrapper] apfmon messages muted
[2025-10-12 12:25:31] 2025-10-12 10:25:31,169 [wrapper] ==== wrapper stdout END ====
[2025-10-12 12:25:31] 2025-10-12 10:25:31,172 [wrapper] ==== wrapper stderr END ====
[2025-10-12 12:25:31]  *** Error codes and diagnostics ***
[2025-10-12 12:25:31]     "exeErrorCode": 0,
[2025-10-12 12:25:31]     "exeErrorDiag": "",
[2025-10-12 12:25:31]     "pilotErrorCode": 0,
[2025-10-12 12:25:31]     "pilotErrorDiag": "",
[2025-10-12 12:25:31]  *** Listing of results directory ***
[2025-10-12 12:25:31] total 419032
[2025-10-12 12:25:31] -rw-r--r-- 1 boinc boinc    557409 Oct 10 16:50 pilot3.tar.gz
[2025-10-12 12:25:31] -rwx------ 1 boinc boinc     36292 Oct 10 17:29 runpilot2-wrapper.sh
[2025-10-12 12:25:31] -rw-r--r-- 1 boinc boinc      5112 Oct 10 17:29 queuedata.json
[2025-10-12 12:25:31] -rw-r--r-- 1 boinc boinc       100 Oct 12 11:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 12:25:31] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 11:13 run_atlas
[2025-10-12 12:25:31] -rw-r--r-- 1 boinc boinc       105 Oct 12 11:13 job.xml
[2025-10-12 12:25:31] -rw-r--r-- 2 boinc boinc 222771796 Oct 12 11:13 EVNT.46676267._001650.pool.root.1
[2025-10-12 12:25:31] -rw-r--r-- 2 boinc boinc    569678 Oct 12 11:13 input.tar.gz
[2025-10-12 12:25:31] -rw-r--r-- 2 boinc boinc     15120 Oct 12 11:13 start_atlas.sh
[2025-10-12 12:25:31] drwxrwx--x 2 boinc boinc      4096 Oct 12 11:13 shared
[2025-10-12 12:25:31] -rw-r--r-- 1 boinc boinc         0 Oct 12 11:13 boinc_setup_complete
[2025-10-12 12:25:31] -rw-r--r-- 1 boinc boinc      6372 Oct 12 11:13 init_data.xml
[2025-10-12 12:25:31] -rw-r--r-- 1 boinc boinc         0 Oct 12 11:13 boinc_lockfile
[2025-10-12 12:25:31] -rw-r--r-- 1 boinc boinc      2550 Oct 12 11:13 pandaJob.out
[2025-10-12 12:25:31] -rw------- 1 boinc boinc    975520 Oct 12 11:13 agis_schedconf.cvmfs.json
[2025-10-12 12:25:31] -rw------- 1 boinc boinc   1560580 Oct 12 11:13 agis_ddmendpoints.agis.ALL.json
[2025-10-12 12:25:31] drwx------ 5 boinc boinc      4096 Oct 12 11:13 pilot3
[2025-10-12 12:25:31] -rw------- 1 boinc boinc 200618958 Oct 12 12:24 HITS.46676269._040698.pool.root.1
[2025-10-12 12:25:31] -rw-r--r-- 1 boinc boinc       529 Oct 12 12:24 boinc_task_state.xml
[2025-10-12 12:25:31] -rw------- 1 boinc boinc        95 Oct 12 12:24 pilot_heartbeat.json
[2025-10-12 12:25:31] -rw------- 1 boinc boinc      1025 Oct 12 12:24 memory_monitor_summary.json
[2025-10-12 12:25:31] -rw------- 1 boinc boinc    262822 Oct 12 12:24 log.46676269._040698.job.log.tgz.1
[2025-10-12 12:25:31] -rw------- 1 boinc boinc      7768 Oct 12 12:24 heartbeat.json
[2025-10-12 12:25:31] -rw-r--r-- 1 boinc boinc      8192 Oct 12 12:25 boinc_mmap_file
[2025-10-12 12:25:31] -rw-r--r-- 1 boinc boinc        27 Oct 12 12:25 wrapper_checkpoint.txt
[2025-10-12 12:25:31] -rw------- 1 boinc boinc       747 Oct 12 12:25 pilotlog.txt
[2025-10-12 12:25:31] -rw------- 1 boinc boinc    639162 Oct 12 12:25 log.46676269._040698.job.log.1
[2025-10-12 12:25:31] -rw------- 1 boinc boinc       357 Oct 12 12:25 output.list
[2025-10-12 12:25:31] -rw-r--r-- 1 boinc boinc       620 Oct 12 12:25 runtime_log
[2025-10-12 12:25:31] -rw------- 1 boinc boinc    921600 Oct 12 12:25 result.tar.gz
[2025-10-12 12:25:31] -rw-r--r-- 1 boinc boinc      8787 Oct 12 12:25 runtime_log.err
[2025-10-12 12:25:31] -rw------- 1 boinc boinc       660 Oct 12 12:25 TXiKDmqEUR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm79PMDmTB2n1m.diag
[2025-10-12 12:25:31] -rw-r--r-- 1 boinc boinc     10283 Oct 12 12:25 stderr.txt
[2025-10-12 12:25:31] HITS file was successfully produced:
[2025-10-12 12:25:31] -rw------- 1 boinc boinc 200618958 Oct 12 12:24 shared/HITS.pool.root.1
[2025-10-12 12:25:31]  *** Contents of shared directory: ***
[2025-10-12 12:25:31] total 414956
[2025-10-12 12:25:31] -rw-r--r-- 2 boinc boinc 222771796 Oct 12 11:13 ATLAS.root_0
[2025-10-12 12:25:31] -rw-r--r-- 2 boinc boinc    569678 Oct 12 11:13 input.tar.gz
[2025-10-12 12:25:31] -rw-r--r-- 2 boinc boinc     15120 Oct 12 11:13 start_atlas.sh
[2025-10-12 12:25:31] -rw------- 1 boinc boinc 200618958 Oct 12 12:24 HITS.pool.root.1
[2025-10-12 12:25:31] -rw------- 1 boinc boinc    921600 Oct 12 12:25 result.tar.gz
12:25:32 (3286973): run_atlas exited; CPU time 16244.481930
12:25:32 (3286973): called boinc_finish(0)

</stderr_txt>
]]>

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