Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:48:55 (1817380): wrapper (7.7.26015): starting
10:48:55 (1817380): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 10:48:55] Arguments: --nthreads 3
[2025-10-12 10:48:55] Threads: 3
[2025-10-12 10:48:55] Checking for CVMFS
[2025-10-12 10:48:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:48:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:48:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:48:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:48:55] 2.9.2.0 570712 4058 83584 151613 3 57 30556551 36864001 0 130560 0 3287065 99.991 137426 890 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 10:48:55] CVMFS is ok
[2025-10-12 10:48:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:48:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 10:48:55] Further information can be found at the LHC@home message board.
[2025-10-12 10:48:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:48:55] Checking for apptainer binary...
[2025-10-12 10:48:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:48:55] Running /usr/bin/apptainer --version
[2025-10-12 10:48:55] apptainer version 1.4.1-1.1
[2025-10-12 10:48:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:48:55] magicA161a
[2025-10-12 10:48:55] apptainer works
[2025-10-12 10:48:55] Set ATHENA_PROC_NUMBER=3
[2025-10-12 10:48:55] Set ATHENA_CORE_NUMBER=3
[2025-10-12 10:48:55] Starting ATLAS job with PandaID=6838454880
[2025-10-12 10:48:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 12:08:12]  *** The last 200 lines of the pilot log: ***
[2025-10-12 12:08:12] 2025-10-12 10:07:34,711 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 12:08:12] 2025-10-12 10:07:34,711 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 12:08:12] 2025-10-12 10:07:34,711 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 12:08:12] 2025-10-12 10:07:34,711 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 12:08:12] 2025-10-12 10:07:34,711 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 12:08:12] 2025-10-12 10:07:34,712 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 12:08:12] 2025-10-12 10:07:34,712 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 12:08:12] 2025-10-12 10:07:34,712 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 12:08:12] 2025-10-12 10:07:34,712 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 12:08:12] 2025-10-12 10:07:34,712 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 12:08:12] 2025-10-12 10:07:34,712 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 12:08:12] 2025-10-12 10:07:34,712 | INFO     | job 6838454880 has completed (purged errors)
[2025-10-12 12:08:12] 2025-10-12 10:07:34,712 | INFO     | overall cleanup function is called
[2025-10-12 12:08:12] 2025-10-12 10:07:35,718 | INFO     | --- collectZombieJob: --- 10, [1827524]
[2025-10-12 12:08:12] 2025-10-12 10:07:35,719 | INFO     | zombie collector waiting for pid 1827524
[2025-10-12 12:08:12] 2025-10-12 10:07:35,719 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 12:08:12] 2025-10-12 10:07:35,719 | INFO     | collected zombie processes
[2025-10-12 12:08:12] 2025-10-12 10:07:35,719 | INFO     | will attempt to kill all subprocesses of pid=1827524
[2025-10-12 12:08:12] 2025-10-12 10:07:35,761 | INFO     | process IDs to be killed: [1827524] (in reverse order)
[2025-10-12 12:08:12] 2025-10-12 10:07:35,786 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 12:08:12] 2025-10-12 10:07:35,786 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 12:08:12] 2025-10-12 10:07:35,787 | INFO     | did not find any defunct processes belonging to 1827524
[2025-10-12 12:08:12] 2025-10-12 10:07:35,788 | INFO     | did not find any defunct processes belonging to 1827524
[2025-10-12 12:08:12] 2025-10-12 10:07:35,788 | INFO     | ready for new job
[2025-10-12 12:08:12] 2025-10-12 10:07:35,788 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 12:08:12] 2025-10-12 10:07:35,789 | INFO     | ***************************************
[2025-10-12 12:08:12] 2025-10-12 10:07:35,789 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 12:08:12] 2025-10-12 10:07:35,789 | INFO     | ***************************************
[2025-10-12 12:08:12] 2025-10-12 10:07:35,789 | INFO     | 
[2025-10-12 12:08:12] 2025-10-12 10:07:35,790 | INFO     | architecture information:
[2025-10-12 12:08:12] 2025-10-12 10:07:35,790 | INFO     | executing command: cat /etc/os-release
[2025-10-12 12:08:12] 2025-10-12 10:07:35,798 | INFO     | cat /etc/os-release:
[2025-10-12 12:08:12] NAME="CentOS Linux"
[2025-10-12 12:08:12] VERSION="7 (Core)"
[2025-10-12 12:08:12] ID="centos"
[2025-10-12 12:08:12] ID_LIKE="rhel fedora"
[2025-10-12 12:08:12] VERSION_ID="7"
[2025-10-12 12:08:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 12:08:12] ANSI_COLOR="0;31"
[2025-10-12 12:08:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 12:08:12] HOME_URL="https://www.centos.org/"
[2025-10-12 12:08:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 12:08:12] 
[2025-10-12 12:08:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 12:08:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 12:08:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 12:08:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 12:08:12] 
[2025-10-12 12:08:12] 2025-10-12 10:07:35,798 | INFO     | ***************************************
[2025-10-12 12:08:12] 2025-10-12 10:07:36,300 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 12:08:12] 2025-10-12 10:07:36,312 | INFO     | sufficient remaining disk space (374091022336 B)
[2025-10-12 12:08:12] 2025-10-12 10:07:36,313 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 12:08:12] 2025-10-12 10:07:36,313 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 12:08:12] 2025-10-12 10:07:36,313 | INFO     | update_server=False
[2025-10-12 12:08:12] 2025-10-12 10:07:36,313 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 12:08:12] 2025-10-12 10:07:36,313 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 12:08:12] 2025-10-12 10:07:36,313 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:08:12] 2025-10-12 10:07:36,313 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:08:12] 2025-10-12 10:07:36,313 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 12:08:12] 2025-10-12 10:07:36,313 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 12:08:12] 2025-10-12 10:07:36,314 | INFO     | aborting loop
[2025-10-12 12:08:12] 2025-10-12 10:07:36,314 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 12:08:12] 2025-10-12 10:07:36,314 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 12:08:12] 2025-10-12 10:07:37,133 | INFO     | all data control threads have been joined
[2025-10-12 12:08:12] 2025-10-12 10:07:37,319 | INFO     | [job] retrieve thread has finished
[2025-10-12 12:08:12] 2025-10-12 10:07:37,319 | INFO     | [job] queue monitor thread has finished
[2025-10-12 12:08:12] 2025-10-12 10:07:37,319 | INFO     | [job] job monitor thread has finished
[2025-10-12 12:08:12] 2025-10-12 10:07:37,535 | INFO     | all payload control threads have been joined
[2025-10-12 12:08:12] 2025-10-12 10:07:37,672 | INFO     | [payload] validate_post thread has finished
[2025-10-12 12:08:12] 2025-10-12 10:07:37,766 | INFO     | [payload] failed_post thread has finished
[2025-10-12 12:08:12] 2025-10-12 10:07:37,772 | INFO     | all job control threads have been joined
[2025-10-12 12:08:12] 2025-10-12 10:07:38,128 | INFO     | [data] copytool_in thread has finished
[2025-10-12 12:08:12] 2025-10-12 10:07:38,139 | INFO     | [data] control thread has finished
[2025-10-12 12:08:12] 2025-10-12 10:07:38,320 | INFO     | [data] copytool_out thread has finished
[2025-10-12 12:08:12] 2025-10-12 10:07:38,443 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 12:08:12] 2025-10-12 10:07:38,540 | INFO     | [payload] control thread has finished
[2025-10-12 12:08:12] 2025-10-12 10:07:38,700 | INFO     | [job] validate thread has finished
[2025-10-12 12:08:12] 2025-10-12 10:07:38,771 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 12:08:12] 2025-10-12 10:07:38,772 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 12:08:12] 2025-10-12 10:07:38,777 | INFO     | [job] control thread has finished
[2025-10-12 12:08:12] 2025-10-12 10:07:39,056 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 12:08:12] 2025-10-12 10:07:43,063 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 12:08:12] 2025-10-12 10:07:46,580 | INFO     | job.realtimelogging is not enabled
[2025-10-12 12:08:12] 2025-10-12 10:07:47,585 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 12:08:12] 2025-10-12 10:08:05,945 | INFO     | [monitor] cgroup control has ended
[2025-10-12 12:08:12] 2025-10-12 10:08:07,412 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140668215207744)>', '<ExcThread(monitor, started 140667418306304)>']
[2025-10-12 12:08:12] 2025-10-12 10:08:07,471 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 12:08:12] 2025-10-12 10:08:07,472 | INFO     | [monitor] control thread has ended
[2025-10-12 12:08:12] 2025-10-12 10:08:12,437 | INFO     | all workflow threads have been joined
[2025-10-12 12:08:12] 2025-10-12 10:08:12,438 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 12:08:12] 2025-10-12 10:08:12,438 | INFO     | traces error code: 0
[2025-10-12 12:08:12] 2025-10-12 10:08:12,438 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 12:08:12] 2025-10-12 10:08:12,488 [wrapper] ==== pilot stdout END ====
[2025-10-12 12:08:12] 2025-10-12 10:08:12,490 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 12:08:12] 2025-10-12 10:08:12,492 [wrapper] pilotpid: 1821098
[2025-10-12 12:08:12] 2025-10-12 10:08:12,495 [wrapper] Pilot exit status: 0
[2025-10-12 12:08:12] 2025-10-12 10:08:12,502 [wrapper] pandaids: 6838454880
[2025-10-12 12:08:12] 2025-10-12 10:08:12,518 [wrapper] cleanup supervisor_pilot 1839648 1821099
[2025-10-12 12:08:12] 2025-10-12 10:08:12,520 [wrapper] Test setup, not cleaning
[2025-10-12 12:08:12] 2025-10-12 10:08:12,523 [wrapper] apfmon messages muted
[2025-10-12 12:08:12] 2025-10-12 10:08:12,525 [wrapper] ==== wrapper stdout END ====
[2025-10-12 12:08:12] 2025-10-12 10:08:12,527 [wrapper] ==== wrapper stderr END ====
[2025-10-12 12:08:12]  *** Error codes and diagnostics ***
[2025-10-12 12:08:12]     "exeErrorCode": 0,
[2025-10-12 12:08:12]     "exeErrorDiag": "",
[2025-10-12 12:08:12]     "pilotErrorCode": 0,
[2025-10-12 12:08:12]     "pilotErrorDiag": "",
[2025-10-12 12:08:12]  *** Listing of results directory ***
[2025-10-12 12:08:12] total 407412
[2025-10-12 12:08:12] -rw-r--r-- 1 boinc boinc    557409 Oct 11 16:01 pilot3.tar.gz
[2025-10-12 12:08:12] -rw-r--r-- 1 boinc boinc      5112 Oct 11 16:53 queuedata.json
[2025-10-12 12:08:12] -rwx------ 1 boinc boinc     36292 Oct 11 16:55 runpilot2-wrapper.sh
[2025-10-12 12:08:12] -rw-r--r-- 1 boinc boinc       100 Oct 12 10:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 12:08:12] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 10:48 run_atlas
[2025-10-12 12:08:12] -rw-r--r-- 1 boinc boinc       105 Oct 12 10:48 job.xml
[2025-10-12 12:08:12] -rw-r--r-- 2 boinc boinc 221066963 Oct 12 10:48 EVNT.46676267._002405.pool.root.1
[2025-10-12 12:08:12] -rw-r--r-- 2 boinc boinc    569684 Oct 12 10:48 input.tar.gz
[2025-10-12 12:08:12] -rw-r--r-- 2 boinc boinc     15120 Oct 12 10:48 start_atlas.sh
[2025-10-12 12:08:12] drwxrwx--x 2 boinc boinc      4096 Oct 12 10:48 shared
[2025-10-12 12:08:12] -rw-r--r-- 1 boinc boinc         0 Oct 12 10:48 boinc_setup_complete
[2025-10-12 12:08:12] -rw-r--r-- 1 boinc boinc      6448 Oct 12 10:48 init_data.xml
[2025-10-12 12:08:12] -rw-r--r-- 1 boinc boinc         0 Oct 12 10:48 boinc_lockfile
[2025-10-12 12:08:12] -rw-r--r-- 1 boinc boinc      2550 Oct 12 10:48 pandaJob.out
[2025-10-12 12:08:12] -rw------- 1 boinc boinc    975520 Oct 12 10:48 agis_schedconf.cvmfs.json
[2025-10-12 12:08:12] -rw------- 1 boinc boinc   1560580 Oct 12 10:49 agis_ddmendpoints.agis.ALL.json
[2025-10-12 12:08:12] drwx------ 5 boinc boinc      4096 Oct 12 10:49 pilot3
[2025-10-12 12:08:12] -rw------- 1 boinc boinc 190321738 Oct 12 12:07 HITS.46676269._059566.pool.root.1
[2025-10-12 12:08:12] -rw-r--r-- 1 boinc boinc       529 Oct 12 12:07 boinc_task_state.xml
[2025-10-12 12:08:12] -rw------- 1 boinc boinc      1018 Oct 12 12:07 memory_monitor_summary.json
[2025-10-12 12:08:12] -rw------- 1 boinc boinc        95 Oct 12 12:07 pilot_heartbeat.json
[2025-10-12 12:08:12] -rw------- 1 boinc boinc    258175 Oct 12 12:07 log.46676269._059566.job.log.tgz.1
[2025-10-12 12:08:12] -rw------- 1 boinc boinc      7762 Oct 12 12:07 heartbeat.json
[2025-10-12 12:08:12] -rw-r--r-- 1 boinc boinc        27 Oct 12 12:07 wrapper_checkpoint.txt
[2025-10-12 12:08:12] -rw-r--r-- 1 boinc boinc      8192 Oct 12 12:07 boinc_mmap_file
[2025-10-12 12:08:12] -rw------- 1 boinc boinc      4628 Oct 12 12:08 pilotlog.txt
[2025-10-12 12:08:12] -rw------- 1 boinc boinc    695055 Oct 12 12:08 log.46676269._059566.job.log.1
[2025-10-12 12:08:12] -rw------- 1 boinc boinc       357 Oct 12 12:08 output.list
[2025-10-12 12:08:12] -rw-r--r-- 1 boinc boinc       620 Oct 12 12:08 runtime_log
[2025-10-12 12:08:12] -rw------- 1 boinc boinc    972800 Oct 12 12:08 result.tar.gz
[2025-10-12 12:08:12] -rw-r--r-- 1 boinc boinc      8797 Oct 12 12:08 runtime_log.err
[2025-10-12 12:08:12] -rw------- 1 boinc boinc       662 Oct 12 12:08 npTMDm4AqR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmRigNDmTNAD0n.diag
[2025-10-12 12:08:12] -rw-r--r-- 1 boinc boinc     11952 Oct 12 12:08 stderr.txt
[2025-10-12 12:08:12] HITS file was successfully produced:
[2025-10-12 12:08:12] -rw------- 1 boinc boinc 190321738 Oct 12 12:07 shared/HITS.pool.root.1
[2025-10-12 12:08:12]  *** Contents of shared directory: ***
[2025-10-12 12:08:12] total 403284
[2025-10-12 12:08:12] -rw-r--r-- 2 boinc boinc 221066963 Oct 12 10:48 ATLAS.root_0
[2025-10-12 12:08:12] -rw-r--r-- 2 boinc boinc    569684 Oct 12 10:48 input.tar.gz
[2025-10-12 12:08:12] -rw-r--r-- 2 boinc boinc     15120 Oct 12 10:48 start_atlas.sh
[2025-10-12 12:08:12] -rw------- 1 boinc boinc 190321738 Oct 12 12:07 HITS.pool.root.1
[2025-10-12 12:08:12] -rw------- 1 boinc boinc    972800 Oct 12 12:08 result.tar.gz
12:08:14 (1817380): run_atlas exited; CPU time 13461.010723
12:08:14 (1817380): called boinc_finish(0)

</stderr_txt>
]]>

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