Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:13:38 (3526301): wrapper (7.7.26015): starting
02:13:38 (3526301): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 02:13:38] Arguments: --nthreads 4
[2025-10-13 02:13:38] Threads: 4
[2025-10-13 02:13:38] Checking for CVMFS
[2025-10-13 02:13:38] No cvmfs_config command found, will try listing directly
[2025-10-13 02:13:38] CVMFS is ok
[2025-10-13 02:13:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 02:13:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 02:13:38] Further information can be found at the LHC@home message board.
[2025-10-13 02:13:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 02:13:38] Checking for apptainer binary...
[2025-10-13 02:13:38] which: no apptainer in ((null))
[2025-10-13 02:13:38] apptainer is not installed, using version from CVMFS
[2025-10-13 02:13:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 02:13:38] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2025-10-13 02:13:38] apptainer works
[2025-10-13 02:13:38] Set ATHENA_PROC_NUMBER=4
[2025-10-13 02:13:38] Set ATHENA_CORE_NUMBER=4
[2025-10-13 02:13:38] Starting ATLAS job with PandaID=6838853072
[2025-10-13 02:13:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:39:47]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:39:47] 2025-10-13 03:30:34,022 | INFO     | chi2: 1.3355707753750858
[2025-10-13 05:39:47] 2025-10-13 03:30:34,022 | INFO     | sum of square deviations: 2060343747.0
[2025-10-13 05:39:47] 2025-10-13 03:30:34,023 | INFO     | sum of deviations: 20928964640.999996
[2025-10-13 05:39:47] 2025-10-13 03:30:34,024 | INFO     | mean x: 1760320158.5
[2025-10-13 05:39:47] 2025-10-13 03:30:34,024 | INFO     | mean y: 2323654.159574468
[2025-10-13 05:39:47] 2025-10-13 03:30:34,024 | INFO     | -- intersect: -17879002414.720917
[2025-10-13 05:39:47] 2025-10-13 03:30:34,024 | INFO     | intersect: -17879002414.720917
[2025-10-13 05:39:47] 2025-10-13 03:30:34,024 | INFO     | chi2: 1.3362652249541638
[2025-10-13 05:39:47] 2025-10-13 03:30:34,025 | INFO     | current chi2=1.3362652249541638 (change=-0.051996464124704045 %)
[2025-10-13 05:39:47] 2025-10-13 03:30:34,025 | INFO     | right removable region: 187
[2025-10-13 05:39:47] 2025-10-13 03:30:34,025 | INFO     | sum of square deviations: 2060343747.0
[2025-10-13 05:39:47] 2025-10-13 03:30:34,026 | INFO     | sum of deviations: -3462371407.0
[2025-10-13 05:39:47] 2025-10-13 03:30:34,027 | INFO     | mean x: 1760320463.5
[2025-10-13 05:39:47] 2025-10-13 03:30:34,027 | INFO     | mean y: 2346111.414893617
[2025-10-13 05:39:47] 2025-10-13 03:30:34,027 | INFO     | -- intersect: 2960533670.5801783
[2025-10-13 05:39:47] 2025-10-13 03:30:34,027 | INFO     | intersect: 2960533670.5801783
[2025-10-13 05:39:47] 2025-10-13 03:30:34,027 | INFO     | chi2: 0.003083421990854972
[2025-10-13 05:39:47] 2025-10-13 03:30:34,028 | INFO     | current chi2=0.003083421990854972 (change=99.76913076808012 %)
[2025-10-13 05:39:47] 2025-10-13 03:30:34,028 | INFO     | sum of square deviations: 1900284932.0
[2025-10-13 05:39:47] 2025-10-13 03:30:34,029 | INFO     | sum of deviations: -4209455364.9999995
[2025-10-13 05:39:47] 2025-10-13 03:30:34,029 | INFO     | mean x: 1760320616.0
[2025-10-13 05:39:47] 2025-10-13 03:30:34,030 | INFO     | mean y: 2346821.174863388
[2025-10-13 05:39:47] 2025-10-13 03:30:34,030 | INFO     | -- intersect: 3901757344.4917445
[2025-10-13 05:39:47] 2025-10-13 03:30:34,030 | INFO     | intersect: 3901757344.4917445
[2025-10-13 05:39:47] 2025-10-13 03:30:34,030 | INFO     | chi2: 0.0017943258389727043
[2025-10-13 05:39:47] 2025-10-13 03:30:34,030 | INFO     | current chi2=0.0017943258389727043 (change=41.807321725847416 %)
[2025-10-13 05:39:47] 2025-10-13 03:30:34,031 | INFO     | sum of square deviations: 1748737904.5
[2025-10-13 05:39:47] 2025-10-13 03:30:34,032 | INFO     | sum of deviations: -4504157101.0
[2025-10-13 05:39:47] 2025-10-13 03:30:34,032 | INFO     | mean x: 1760320768.5
[2025-10-13 05:39:47] 2025-10-13 03:30:34,032 | INFO     | mean y: 2347115.606741573
[2025-10-13 05:39:47] 2025-10-13 03:30:34,032 | INFO     | -- intersect: 4536337754.840954
[2025-10-13 05:39:47] 2025-10-13 03:30:34,033 | INFO     | intersect: 4536337754.840954
[2025-10-13 05:39:47] 2025-10-13 03:30:34,033 | INFO     | chi2: 0.0012471039378056247
[2025-10-13 05:39:47] 2025-10-13 03:30:34,033 | INFO     | current chi2=0.0012471039378056247 (change=30.497353896457156 %)
[2025-10-13 05:39:47] 2025-10-13 03:30:34,034 | INFO     | sum of square deviations: 1605470102.0
[2025-10-13 05:39:47] 2025-10-13 03:30:34,035 | INFO     | sum of deviations: -4379038415.000001
[2025-10-13 05:39:47] 2025-10-13 03:30:34,035 | INFO     | mean x: 1760320921.0
[2025-10-13 05:39:47] 2025-10-13 03:30:34,035 | INFO     | mean y: 2346981.416184971
[2025-10-13 05:39:47] 2025-10-13 03:30:34,035 | INFO     | -- intersect: 4803752455.229975
[2025-10-13 05:39:47] 2025-10-13 03:30:34,035 | INFO     | intersect: 4803752455.229975
[2025-10-13 05:39:47] 2025-10-13 03:30:34,036 | INFO     | chi2: 0.0011606884556015148
[2025-10-13 05:39:47] 2025-10-13 03:30:34,036 | INFO     | current chi2=0.0011606884556015148 (change=6.929292706441494 %)
[2025-10-13 05:39:47] 2025-10-13 03:30:34,036 | INFO     | left removable region: 40
[2025-10-13 05:39:47] 2025-10-13 03:30:34,036 | INFO     | sum of square deviations: 984941258.0
[2025-10-13 05:39:47] 2025-10-13 03:30:34,037 | INFO     | sum of deviations: -2559615205.0000005
[2025-10-13 05:39:47] 2025-10-13 03:30:34,037 | INFO     | mean x: 1760321348.0
[2025-10-13 05:39:47] 2025-10-13 03:30:34,038 | INFO     | mean y: 2345285.0204081633
[2025-10-13 05:39:47] 2025-10-13 03:30:34,038 | INFO     | -- intersect: 4576978798.877027
[2025-10-13 05:39:47] 2025-10-13 03:30:34,038 | INFO     | intersect: 4576978798.877027
[2025-10-13 05:39:47] 2025-10-13 03:30:34,038 | INFO     | chi2: 0.0010953918013653285
[2025-10-13 05:39:47] 2025-10-13 03:30:34,038 | INFO     | -- intersect: 4576978798.877027
[2025-10-13 05:39:47] 2025-10-13 03:30:34,039 | INFO     | current memory leak: -2.60 B/s (using 147 data points, chi2=0.00)
[2025-10-13 05:39:47] 2025-10-13 03:30:34,039 | INFO     | could have reported an average CPU frequency of 2600 MHz (10 samples)
[2025-10-13 05:39:47] 2025-10-13 03:30:34,039 | INFO     | ..............................
[2025-10-13 05:39:47] 2025-10-13 03:30:34,039 | INFO     | . Timing measurements:
[2025-10-13 05:39:47] 2025-10-13 03:30:34,040 | INFO     | . get job = 0 s
[2025-10-13 05:39:47] 2025-10-13 03:30:34,040 | INFO     | . initial setup = 1 s
[2025-10-13 05:39:47] 2025-10-13 03:30:34,040 | INFO     | . payload setup = 5 s
[2025-10-13 05:39:47] 2025-10-13 03:30:34,040 | INFO     | . stage-in = 0 s
[2025-10-13 05:39:47] 2025-10-13 03:30:34,040 | INFO     | . payload execution = 11770 s
[2025-10-13 05:39:47] 2025-10-13 03:30:34,040 | INFO     | . stage-out = 1 s
[2025-10-13 05:39:47] 2025-10-13 03:30:34,040 | INFO     | . log creation = 0 s
[2025-10-13 05:39:47] 2025-10-13 03:30:34,040 | INFO     | ..............................
[2025-10-13 05:39:47] 2025-10-13 03:30:34,474 | INFO     | 
[2025-10-13 05:39:47] 2025-10-13 03:30:34,475 | INFO     | job summary report
[2025-10-13 05:39:47] 2025-10-13 03:30:34,475 | INFO     | --------------------------------------------------
[2025-10-13 05:39:47] 2025-10-13 03:30:34,475 | INFO     | PanDA job id: 6838853072
[2025-10-13 05:39:47] 2025-10-13 03:30:34,475 | INFO     | task id: 46676269
[2025-10-13 05:39:47] 2025-10-13 03:30:34,475 | INFO     | errors: (none)
[2025-10-13 05:39:47] 2025-10-13 03:30:34,475 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:39:47] 2025-10-13 03:30:34,476 | INFO     | pilot state: finished 
[2025-10-13 05:39:47] 2025-10-13 03:30:34,476 | INFO     | transexitcode: 0
[2025-10-13 05:39:47] 2025-10-13 03:30:34,476 | INFO     | exeerrorcode: 0
[2025-10-13 05:39:47] 2025-10-13 03:30:34,476 | INFO     | exeerrordiag: 
[2025-10-13 05:39:47] 2025-10-13 03:30:34,476 | INFO     | exitcode: 0
[2025-10-13 05:39:47] 2025-10-13 03:30:34,476 | INFO     | exitmsg: OK
[2025-10-13 05:39:47] 2025-10-13 03:30:34,476 | INFO     | cpuconsumptiontime: 45769 s
[2025-10-13 05:39:47] 2025-10-13 03:30:34,476 | INFO     | nevents: 400
[2025-10-13 05:39:47] 2025-10-13 03:30:34,477 | INFO     | neventsw: 0
[2025-10-13 05:39:47] 2025-10-13 03:30:34,477 | INFO     | pid: 3557804
[2025-10-13 05:39:47] 2025-10-13 03:30:34,477 | INFO     | pgrp: 3557804
[2025-10-13 05:39:47] 2025-10-13 03:30:34,477 | INFO     | corecount: 4
[2025-10-13 05:39:47] 2025-10-13 03:30:34,477 | INFO     | event service: False
[2025-10-13 05:39:47] 2025-10-13 03:30:34,477 | INFO     | sizes: {0: 2348691, 1: 2348890, 5: 2349152, 12: 2349208, 11780: 2378738, 11781: 2378737, 11782: 2387941, 11783: 2387997, 11790: 2388191}
[2025-10-13 05:39:47] 2025-10-13 03:30:34,477 | INFO     | --------------------------------------------------
[2025-10-13 05:39:47] 2025-10-13 03:30:34,477 | INFO     | 
[2025-10-13 05:39:47] 2025-10-13 03:30:34,478 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/0
[2025-10-13 05:39:47] 2025-10-13 03:30:34,496 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:39:47] 2025-10-13 03:30:34,497 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:39:47] 2025-10-13 03:30:34,497 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:39:47] 2025-10-13 03:30:34,497 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:39:47] 2025-10-13 03:30:34,497 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:39:47] 2025-10-13 03:30:34,497 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:39:47] 2025-10-13 03:30:34,497 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:39:47] 2025-10-13 03:30:34,497 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:39:47] 2025-10-13 03:30:34,497 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:39:47] 2025-10-13 03:30:34,498 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:39:47] 2025-10-13 03:30:34,498 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:39:47] 2025-10-13 03:30:34,498 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:39:47] 2025-10-13 03:30:34,498 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:39:47] 2025-10-13 03:30:34,498 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:39:47] 2025-10-13 03:30:34,498 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:39:47] 2025-10-13 03:30:34,498 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:39:47] 2025-10-13 03:30:34,499 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:39:47] 2025-10-13 03:30:34,499 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:39:47] 2025-10-13 03:30:34,499 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:39:47] 2025-10-13 03:30:34,499 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:39:47] 2025-10-13 03:30:34,499 | INFO     | job 6838853072 has completed (purged errors)
[2025-10-13 05:39:47] 2025-10-13 03:30:34,499 | INFO     | overall cleanup function is called
[2025-10-13 05:39:47] 2025-10-13 03:30:35,507 | INFO     | --- collectZombieJob: --- 10, [3557804]
[2025-10-13 05:39:47] 2025-10-13 03:30:35,507 | INFO     | zombie collector waiting for pid 3557804
[2025-10-13 05:39:47] 2025-10-13 03:30:35,507 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:39:47] 2025-10-13 03:30:35,507 | INFO     | collected zombie processes
[2025-10-13 05:39:47] 2025-10-13 03:30:35,507 | INFO     | will attempt to kill all subprocesses of pid=3557804
[2025-10-13 05:39:47] 2025-10-13 03:30:35,816 | INFO     | process IDs to be killed: [3557804] (in reverse order)
[2025-10-13 05:39:47] 2025-10-13 03:30:35,897 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:39:47] 2025-10-13 03:30:35,898 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:39:47] 2025-10-13 03:30:35,907 | INFO     | did not find any defunct processes belonging to 3557804
[2025-10-13 05:39:47] 2025-10-13 03:30:35,914 | INFO     | did not find any defunct processes belonging to 3557804
[2025-10-13 05:39:47] 2025-10-13 03:30:35,914 | INFO     | ready for new job
[2025-10-13 05:39:47] 2025-10-13 03:30:35,914 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:39:47] 2025-10-13 03:30:35,916 | INFO     | ***************************************
[2025-10-13 05:39:47] 2025-10-13 03:30:35,916 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:39:47] 2025-10-13 03:30:35,917 | INFO     | ***************************************
[2025-10-13 05:39:47] 2025-10-13 03:30:35,917 | INFO     | 
[2025-10-13 05:39:47] 2025-10-13 03:30:35,919 | INFO     | architecture information:
[2025-10-13 05:39:47] 2025-10-13 03:30:35,919 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:39:47] 2025-10-13 03:30:35,932 | INFO     | cat /etc/os-release:
[2025-10-13 05:39:47] NAME="CentOS Linux"
[2025-10-13 05:39:47] VERSION="7 (Core)"
[2025-10-13 05:39:47] ID="centos"
[2025-10-13 05:39:47] ID_LIKE="rhel fedora"
[2025-10-13 05:39:47] VERSION_ID="7"
[2025-10-13 05:39:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:39:47] ANSI_COLOR="0;31"
[2025-10-13 05:39:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:39:47] HOME_URL="https://www.centos.org/"
[2025-10-13 05:39:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:39:47] 
[2025-10-13 05:39:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:39:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:39:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:39:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:39:47] 
[2025-10-13 05:39:47] 2025-10-13 03:30:35,932 | INFO     | ***************************************
[2025-10-13 05:39:47] 2025-10-13 03:30:36,435 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2025-10-13 05:39:47] 2025-10-13 03:30:36,449 | INFO     | sufficient remaining disk space (1675861426176 B)
[2025-10-13 05:39:47] 2025-10-13 03:30:36,449 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:39:47] 2025-10-13 03:30:36,449 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:39:47] 2025-10-13 03:30:36,449 | INFO     | update_server=False
[2025-10-13 05:39:47] 2025-10-13 03:30:36,449 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:39:47] 2025-10-13 03:30:36,513 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:39:47] 2025-10-13 03:30:36,597 | INFO     | all data control threads have been joined
[2025-10-13 05:39:47] 2025-10-13 03:30:36,887 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 05:39:47] 2025-10-13 03:30:36,887 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 05:39:47] 2025-10-13 03:30:36,887 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:39:47] 2025-10-13 03:30:36,888 | INFO     | will abort loop
[2025-10-13 05:39:47] 2025-10-13 03:30:37,337 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:39:47] 2025-10-13 03:30:37,455 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:39:47] 2025-10-13 03:30:37,602 | INFO     | [data] control thread has finished
[2025-10-13 05:39:47] 2025-10-13 03:30:37,612 | INFO     | all job control threads have been joined
[2025-10-13 05:39:47] 2025-10-13 03:30:37,617 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:39:47] 2025-10-13 03:30:37,808 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:39:47] 2025-10-13 03:30:37,856 | INFO     | all payload control threads have been joined
[2025-10-13 05:39:47] 2025-10-13 03:30:37,893 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:39:47] 2025-10-13 03:30:38,335 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:39:47] 2025-10-13 03:30:38,364 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:39:47] 2025-10-13 03:30:38,509 | INFO     | [job] validate thread has finished
[2025-10-13 05:39:47] 2025-10-13 03:30:38,519 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:39:47] 2025-10-13 03:30:38,617 | INFO     | [job] control thread has finished
[2025-10-13 05:39:47] 2025-10-13 03:30:38,621 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:39:47] 2025-10-13 03:30:38,651 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:39:47] 2025-10-13 03:30:38,802 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:39:47] 2025-10-13 03:30:38,861 | INFO     | [payload] control thread has finished
[2025-10-13 05:39:47] 2025-10-13 03:30:39,159 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:39:47] 2025-10-13 03:30:40,164 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:39:47] 2025-10-13 03:30:41,342 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:39:47] 2025-10-13 03:31:06,032 | INFO     | PID=3537113 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 05:39:47] 2025-10-13 03:31:06,032 | INFO     | .. there are 3 such processes running
[2025-10-13 05:39:47] 2025-10-13 03:31:06,033 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:39:47] 2025-10-13 03:31:06,033 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:39:47] 2025-10-13 03:31:06,034 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:39:47] 2025-10-13 03:31:07,834 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:39:47] 2025-10-13 03:31:09,555 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22717831034688)>', '<ExcThread(monitor, started 22717591942912)>']
[2025-10-13 05:39:47] 2025-10-13 03:31:10,054 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:39:47] 2025-10-13 03:31:10,054 | INFO     | [monitor] control thread has ended
[2025-10-13 05:39:47] 2025-10-13 03:31:14,580 | INFO     | all workflow threads have been joined
[2025-10-13 05:39:47] 2025-10-13 03:31:14,580 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:39:47] 2025-10-13 03:31:14,581 | INFO     | traces error code: 0
[2025-10-13 05:39:47] 2025-10-13 03:31:14,581 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:39:47] 2025-10-13 03:31:14,705 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:39:47] 2025-10-13 03:31:14,707 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:39:47] 2025-10-13 03:31:14,710 [wrapper] pilotpid: 3537113
[2025-10-13 05:39:47] 2025-10-13 03:31:14,712 [wrapper] Pilot exit status: 0
[2025-10-13 05:39:47] 2025-10-13 03:31:14,721 [wrapper] pandaids: 6838853072
[2025-10-13 05:39:47] 2025-10-13 03:31:14,775 [wrapper] cleanup supervisor_pilot 3688611 3537116
[2025-10-13 05:39:47] 2025-10-13 03:31:14,777 [wrapper] Test setup, not cleaning
[2025-10-13 05:39:47] 2025-10-13 03:31:14,779 [wrapper] apfmon messages muted
[2025-10-13 05:39:47] 2025-10-13 03:31:14,781 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:39:47] 2025-10-13 03:31:14,783 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:39:47]  *** Error codes and diagnostics ***
[2025-10-13 05:39:47]     "exeErrorCode": 0,
[2025-10-13 05:39:47]     "exeErrorDiag": "",
[2025-10-13 05:39:47]     "pilotErrorCode": 0,
[2025-10-13 05:39:47]     "pilotErrorDiag": "",
[2025-10-13 05:39:47]  *** Listing of results directory ***
[2025-10-13 05:39:47] total 408868
[2025-10-13 05:39:47] -rw-r--r-- 1 boinc boinc    557409 Oct 11 22:36 pilot3.tar.gz
[2025-10-13 05:39:47] -rwx------ 1 boinc boinc     36292 Oct 11 22:47 runpilot2-wrapper.sh
[2025-10-13 05:39:47] -rw-r--r-- 1 boinc boinc      5112 Oct 11 22:47 queuedata.json
[2025-10-13 05:39:47] -rw-r--r-- 1 boinc boinc       100 Oct 13 02:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:39:47] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 02:13 run_atlas
[2025-10-13 05:39:47] -rw-r--r-- 1 boinc boinc       105 Oct 13 02:13 job.xml
[2025-10-13 05:39:47] -rw-r--r-- 2 boinc boinc 222335140 Oct 13 02:13 EVNT.46676267._002602.pool.root.1
[2025-10-13 05:39:47] -rw-r--r-- 1 boinc boinc      6420 Oct 13 02:13 init_data.xml
[2025-10-13 05:39:47] -rw-r--r-- 2 boinc boinc     15120 Oct 13 02:13 start_atlas.sh
[2025-10-13 05:39:47] drwxrwx--x 2 boinc boinc      4096 Oct 13 02:13 shared
[2025-10-13 05:39:47] -rw-r--r-- 2 boinc boinc    569678 Oct 13 02:13 input.tar.gz
[2025-10-13 05:39:47] -rw-r--r-- 1 boinc boinc         0 Oct 13 02:13 boinc_lockfile
[2025-10-13 05:39:47] -rw-r--r-- 1 boinc boinc      2547 Oct 13 02:13 pandaJob.out
[2025-10-13 05:39:47] -rw------- 1 boinc boinc    975603 Oct 13 02:13 agis_schedconf.cvmfs.json
[2025-10-13 05:39:47] drwx------ 5 boinc boinc      4096 Oct 13 02:13 pilot3
[2025-10-13 05:39:47] -rw------- 1 boinc boinc 188346276 Oct 13 05:29 HITS.46676269._064708.pool.root.1
[2025-10-13 05:39:47] -rw-r--r-- 1 boinc boinc       527 Oct 13 05:29 boinc_task_state.xml
[2025-10-13 05:39:47] -rw------- 1 boinc boinc      1030 Oct 13 05:30 memory_monitor_summary.json
[2025-10-13 05:39:47] -rw------- 1 boinc boinc   1560580 Oct 13 05:30 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:39:47] -rw------- 1 boinc boinc    355476 Oct 13 05:30 log.46676269._064708.job.log.tgz.1
[2025-10-13 05:39:47] -rw------- 1 boinc boinc      7826 Oct 13 05:30 heartbeat.json
[2025-10-13 05:39:47] -rw------- 1 boinc boinc        95 Oct 13 05:31 pilot_heartbeat.json
[2025-10-13 05:39:47] -rw------- 1 boinc boinc      5020 Oct 13 05:31 pilotlog.txt
[2025-10-13 05:39:47] -rw------- 1 boinc boinc   1690861 Oct 13 05:31 log.46676269._064708.job.log.1
[2025-10-13 05:39:47] -rw------- 1 boinc boinc       357 Oct 13 05:31 output.list
[2025-10-13 05:39:47] -rw-r--r-- 1 boinc boinc       620 Oct 13 05:31 runtime_log
[2025-10-13 05:39:47] -rw------- 1 boinc boinc   2068480 Oct 13 05:31 result.tar.gz
[2025-10-13 05:39:47] -rw-r--r-- 1 boinc boinc      9070 Oct 13 05:31 runtime_log.err
[2025-10-13 05:39:47] -rw------- 1 boinc boinc       666 Oct 13 05:31 FzQLDmkfvR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3ZhNDma5n67n.diag
[2025-10-13 05:39:47] -rw-r--r-- 1 boinc boinc        25 Oct 13 05:39 wrapper_checkpoint.txt
[2025-10-13 05:39:47] -rw-r--r-- 1 boinc boinc      8192 Oct 13 05:39 boinc_mmap_file
[2025-10-13 05:39:47] -rw-r--r-- 1 boinc boinc     20770 Oct 13 05:39 stderr.txt
[2025-10-13 05:39:47] HITS file was successfully produced:
[2025-10-13 05:39:47] -rw------- 1 boinc boinc 188346276 Oct 13 05:29 shared/HITS.pool.root.1
[2025-10-13 05:39:47]  *** Contents of shared directory: ***
[2025-10-13 05:39:47] total 403664
[2025-10-13 05:39:47] -rw-r--r-- 2 boinc boinc 222335140 Oct 13 02:13 ATLAS.root_0
[2025-10-13 05:39:47] -rw-r--r-- 2 boinc boinc     15120 Oct 13 02:13 start_atlas.sh
[2025-10-13 05:39:47] -rw-r--r-- 2 boinc boinc    569678 Oct 13 02:13 input.tar.gz
[2025-10-13 05:39:47] -rw------- 1 boinc boinc 188346276 Oct 13 05:29 HITS.pool.root.1
[2025-10-13 05:39:47] -rw------- 1 boinc boinc   2068480 Oct 13 05:31 result.tar.gz
05:39:49 (3526301): run_atlas exited; CPU time 46165.554096
05:39:49 (3526301): called boinc_finish(0)

</stderr_txt>
]]>

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