Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
23:11:59 (1387735): wrapper (7.7.26015): starting
23:11:59 (1387735): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 23:11:59] Arguments: --nthreads 12
[2025-10-11 23:11:59] Threads: 12
[2025-10-11 23:11:59] Checking for CVMFS
[2025-10-11 23:12:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 23:12:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 23:12:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 23:12:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 23:12:00] 2.11.0.0 3299214 2265 83500 151599 3 188 5244046 6144001 14759 130560 0 44444248 100.000 80716 185 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-11 23:12:00] CVMFS is ok
[2025-10-11 23:12:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 23:12:00] Checking for apptainer binary...
[2025-10-11 23:12:00] apptainer is not installed, using version from CVMFS
[2025-10-11 23:12:00] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 23:12:00] radiat0r
[2025-10-11 23:12:00] apptainer works
[2025-10-11 23:12:00] Set ATHENA_PROC_NUMBER=12
[2025-10-11 23:12:00] Set ATHENA_CORE_NUMBER=12
[2025-10-11 23:12:00] Starting ATLAS job with PandaID=6838603982
[2025-10-11 23:12:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/22 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 00:03:42]  *** The last 200 lines of the pilot log: ***
[2025-10-12 00:03:42] 2025-10-12 00:02:54,029 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/22/PanDA_Pilot-6838603982/log.46676269._060189.job.log.tgz.1 /var/lib/boinc/slots/22/log.46676269._060189.j
[2025-10-12 00:03:42] 2025-10-12 00:02:54,055 | INFO     | adding to output.list: log.46676269._060189.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a7/0e/log.46676269._060189.job.log.tg
[2025-10-12 00:03:42] 2025-10-12 00:02:54,056 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 00:03:42] 2025-10-12 00:02:54,057 | INFO     | summary of transferred files:
[2025-10-12 00:03:42] 2025-10-12 00:02:54,057 | INFO     |  -- lfn=log.46676269._060189.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 00:03:42] 2025-10-12 00:02:54,057 | INFO     | stage-out finished correctly
[2025-10-12 00:03:42] 2025-10-12 00:02:55,370 | INFO     | time since job start (3039s) is within the limit (172800.0s)
[2025-10-12 00:03:42] 2025-10-12 00:02:55,902 | INFO     | monitor loop #214: job 0:6838603982 is in state 'finished'
[2025-10-12 00:03:42] 2025-10-12 00:02:55,902 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 00:03:42] 2025-10-12 00:02:57,375 | INFO     | time since job start (3041s) is within the limit (172800.0s)
[2025-10-12 00:03:42] 2025-10-12 00:02:57,584 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 00:03:42] 2025-10-12 00:02:58,227 | INFO     | job 6838603982 has state=finished
[2025-10-12 00:03:42] 2025-10-12 00:02:58,228 | INFO     | preparing for final server update for job 6838603982 in state='finished'
[2025-10-12 00:03:42] 2025-10-12 00:02:58,228 | INFO     | this job has now completed (state=finished)
[2025-10-12 00:03:42] 2025-10-12 00:02:58,229 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 00:03:42] 2025-10-12 00:02:58,229 | INFO     | log transfer has been attempted: DONE
[2025-10-12 00:03:42] 2025-10-12 00:02:58,229 | INFO     | job 6838603982 has finished - writing final server update
[2025-10-12 00:03:42] 2025-10-12 00:02:58,229 | INFO     | total number of processed events: 400 (read)
[2025-10-12 00:03:42] 2025-10-12 00:02:58,232 | INFO     | executing command: lscpu
[2025-10-12 00:03:42] 2025-10-12 00:02:58,404 | INFO     | monitor loop #215: job 0:6838603982 is in state 'finished'
[2025-10-12 00:03:42] 2025-10-12 00:02:58,404 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 00:03:42] 2025-10-12 00:02:58,428 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 00:03:42] 2025-10-12 00:02:59,382 | INFO     | time since job start (3043s) is within the limit (172800.0s)
[2025-10-12 00:03:42] 2025-10-12 00:03:00,906 | INFO     | monitor loop #216: job 0:6838603982 is in state 'finished'
[2025-10-12 00:03:42] 2025-10-12 00:03:00,907 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 00:03:42] 2025-10-12 00:03:01,388 | INFO     | time since job start (3045s) is within the limit (172800.0s)
[2025-10-12 00:03:42] 2025-10-12 00:03:03,394 | INFO     | time since job start (3047s) is within the limit (172800.0s)
[2025-10-12 00:03:42] 2025-10-12 00:03:03,410 | INFO     | monitor loop #217: job 0:6838603982 is in state 'finished'
[2025-10-12 00:03:42] 2025-10-12 00:03:03,410 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 00:03:42] 2025-10-12 00:03:05,400 | INFO     | time since job start (3049s) is within the limit (172800.0s)
[2025-10-12 00:03:42] 2025-10-12 00:03:05,913 | INFO     | monitor loop #218: job 0:6838603982 is in state 'finished'
[2025-10-12 00:03:42] 2025-10-12 00:03:05,914 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 00:03:42] 2025-10-12 00:03:07,406 | INFO     | time since job start (3051s) is within the limit (172800.0s)
[2025-10-12 00:03:42] 2025-10-12 00:03:08,417 | INFO     | monitor loop #219: job 0:6838603982 is in state 'finished'
[2025-10-12 00:03:42] 2025-10-12 00:03:08,418 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 00:03:42] 2025-10-12 00:03:08,963 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 00:03:42] 2025-10-12 00:03:09,029 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2394.678578125
[2025-10-12 00:03:42] 2025-10-12 00:03:09,102 | INFO     | using path: /var/lib/boinc/slots/22/PanDA_Pilot-6838603982/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 00:03:42] 2025-10-12 00:03:09,103 | INFO     | extracted standard info from prmon json
[2025-10-12 00:03:42] 2025-10-12 00:03:09,103 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 00:03:42] 2025-10-12 00:03:09,103 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 00:03:42] 2025-10-12 00:03:09,104 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 00:03:42] 2025-10-12 00:03:09,104 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 00:03:42] 2025-10-12 00:03:09,105 | INFO     | fitting pss+swap vs Time
[2025-10-12 00:03:42] 2025-10-12 00:03:09,106 | INFO     | sum of square deviations: 24640462.0
[2025-10-12 00:03:42] 2025-10-12 00:03:09,106 | INFO     | sum of deviations: 161099780.00000003
[2025-10-12 00:03:42] 2025-10-12 00:03:09,106 | INFO     | mean x: 1760225956.0
[2025-10-12 00:03:42] 2025-10-12 00:03:09,106 | INFO     | mean y: 2661017.7906976743
[2025-10-12 00:03:42] 2025-10-12 00:03:09,106 | INFO     | -- intersect: -11505727674.835672
[2025-10-12 00:03:42] 2025-10-12 00:03:09,106 | INFO     | intersect: -11505727674.835672
[2025-10-12 00:03:42] 2025-10-12 00:03:09,106 | INFO     | chi2: 0.0006164054920538698
[2025-10-12 00:03:42] 2025-10-12 00:03:09,107 | INFO     | -- intersect: -11505727674.835672
[2025-10-12 00:03:42] 2025-10-12 00:03:09,107 | INFO     | current memory leak: 6.54 B/s (using 43 data points, chi2=0.00)
[2025-10-12 00:03:42] 2025-10-12 00:03:09,107 | INFO     | could have reported an average CPU frequency of 2378 MHz (5 samples)
[2025-10-12 00:03:42] 2025-10-12 00:03:09,107 | INFO     | ..............................
[2025-10-12 00:03:42] 2025-10-12 00:03:09,107 | INFO     | . Timing measurements:
[2025-10-12 00:03:42] 2025-10-12 00:03:09,107 | INFO     | . get job = 0 s
[2025-10-12 00:03:42] 2025-10-12 00:03:09,108 | INFO     | . initial setup = 1 s
[2025-10-12 00:03:42] 2025-10-12 00:03:09,108 | INFO     | . payload setup = 8 s
[2025-10-12 00:03:42] 2025-10-12 00:03:09,108 | INFO     | . stage-in = 0 s
[2025-10-12 00:03:42] 2025-10-12 00:03:09,108 | INFO     | . payload execution = 3007 s
[2025-10-12 00:03:42] 2025-10-12 00:03:09,108 | INFO     | . stage-out = 0 s
[2025-10-12 00:03:42] 2025-10-12 00:03:09,108 | INFO     | . log creation = 0 s
[2025-10-12 00:03:42] 2025-10-12 00:03:09,108 | INFO     | ..............................
[2025-10-12 00:03:42] 2025-10-12 00:03:09,215 | INFO     | 
[2025-10-12 00:03:42] 2025-10-12 00:03:09,216 | INFO     | job summary report
[2025-10-12 00:03:42] 2025-10-12 00:03:09,216 | INFO     | --------------------------------------------------
[2025-10-12 00:03:42] 2025-10-12 00:03:09,216 | INFO     | PanDA job id: 6838603982
[2025-10-12 00:03:42] 2025-10-12 00:03:09,216 | INFO     | task id: 46676269
[2025-10-12 00:03:42] 2025-10-12 00:03:09,216 | INFO     | errors: (none)
[2025-10-12 00:03:42] 2025-10-12 00:03:09,216 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 00:03:42] 2025-10-12 00:03:09,216 | INFO     | pilot state: finished 
[2025-10-12 00:03:42] 2025-10-12 00:03:09,216 | INFO     | transexitcode: 0
[2025-10-12 00:03:42] 2025-10-12 00:03:09,216 | INFO     | exeerrorcode: 0
[2025-10-12 00:03:42] 2025-10-12 00:03:09,217 | INFO     | exeerrordiag: 
[2025-10-12 00:03:42] 2025-10-12 00:03:09,217 | INFO     | exitcode: 0
[2025-10-12 00:03:42] 2025-10-12 00:03:09,217 | INFO     | exitmsg: OK
[2025-10-12 00:03:42] 2025-10-12 00:03:09,217 | INFO     | cpuconsumptiontime: 32241 s
[2025-10-12 00:03:42] 2025-10-12 00:03:09,217 | INFO     | nevents: 400
[2025-10-12 00:03:42] 2025-10-12 00:03:09,217 | INFO     | neventsw: 0
[2025-10-12 00:03:42] 2025-10-12 00:03:09,217 | INFO     | pid: 1400544
[2025-10-12 00:03:42] 2025-10-12 00:03:09,217 | INFO     | pgrp: 1400544
[2025-10-12 00:03:42] 2025-10-12 00:03:09,217 | INFO     | corecount: 12
[2025-10-12 00:03:42] 2025-10-12 00:03:09,217 | INFO     | event service: False
[2025-10-12 00:03:42] 2025-10-12 00:03:09,218 | INFO     | sizes: {0: 2347978, 1: 2348835, 8: 2349097, 12: 2349125, 3018: 2374545, 3019: 2383728, 3023: 2383728, 3035: 2383954}
[2025-10-12 00:03:42] 2025-10-12 00:03:09,218 | INFO     | --------------------------------------------------
[2025-10-12 00:03:42] 2025-10-12 00:03:09,218 | INFO     | 
[2025-10-12 00:03:42] 2025-10-12 00:03:09,218 | INFO     | executing command: ls -lF /var/lib/boinc/slots/22
[2025-10-12 00:03:42] 2025-10-12 00:03:09,251 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 00:03:42] 2025-10-12 00:03:09,251 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 00:03:42] 2025-10-12 00:03:09,251 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 00:03:42] 2025-10-12 00:03:09,251 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 00:03:42] 2025-10-12 00:03:09,251 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 00:03:42] 2025-10-12 00:03:09,251 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 00:03:42] 2025-10-12 00:03:09,251 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 00:03:42] 2025-10-12 00:03:09,252 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 00:03:42] 2025-10-12 00:03:09,252 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 00:03:42] 2025-10-12 00:03:09,252 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 00:03:42] 2025-10-12 00:03:09,252 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 00:03:42] 2025-10-12 00:03:09,252 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 00:03:42] 2025-10-12 00:03:09,252 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 00:03:42] 2025-10-12 00:03:09,252 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 00:03:42] 2025-10-12 00:03:09,252 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 00:03:42] 2025-10-12 00:03:09,252 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 00:03:42] 2025-10-12 00:03:09,252 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 00:03:42] 2025-10-12 00:03:09,253 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 00:03:42] 2025-10-12 00:03:09,253 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 00:03:42] 2025-10-12 00:03:09,253 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 00:03:42] 2025-10-12 00:03:09,253 | INFO     | job 6838603982 has completed (purged errors)
[2025-10-12 00:03:42] 2025-10-12 00:03:09,253 | INFO     | overall cleanup function is called
[2025-10-12 00:03:42] 2025-10-12 00:03:10,262 | INFO     | --- collectZombieJob: --- 10, [1400544]
[2025-10-12 00:03:42] 2025-10-12 00:03:10,263 | INFO     | zombie collector waiting for pid 1400544
[2025-10-12 00:03:42] 2025-10-12 00:03:10,263 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 00:03:42] 2025-10-12 00:03:10,263 | INFO     | collected zombie processes
[2025-10-12 00:03:42] 2025-10-12 00:03:10,263 | INFO     | will attempt to kill all subprocesses of pid=1400544
[2025-10-12 00:03:42] 2025-10-12 00:03:11,083 | INFO     | process IDs to be killed: [1400544] (in reverse order)
[2025-10-12 00:03:42] 2025-10-12 00:03:11,365 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 00:03:42] 2025-10-12 00:03:11,365 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 00:03:42] 2025-10-12 00:03:11,395 | INFO     | did not find any defunct processes belonging to 1400544
[2025-10-12 00:03:42] 2025-10-12 00:03:11,421 | INFO     | did not find any defunct processes belonging to 1400544
[2025-10-12 00:03:42] 2025-10-12 00:03:11,422 | INFO     | ready for new job
[2025-10-12 00:03:42] 2025-10-12 00:03:11,422 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 00:03:42] 2025-10-12 00:03:11,424 | INFO     | ***************************************
[2025-10-12 00:03:42] 2025-10-12 00:03:11,424 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 00:03:42] 2025-10-12 00:03:11,425 | INFO     | ***************************************
[2025-10-12 00:03:42] 2025-10-12 00:03:11,425 | INFO     | 
[2025-10-12 00:03:42] 2025-10-12 00:03:11,462 | INFO     | architecture information:
[2025-10-12 00:03:42] 2025-10-12 00:03:11,463 | INFO     | executing command: cat /etc/os-release
[2025-10-12 00:03:42] 2025-10-12 00:03:11,488 | INFO     | cat /etc/os-release:
[2025-10-12 00:03:42] NAME="CentOS Linux"
[2025-10-12 00:03:42] VERSION="7 (Core)"
[2025-10-12 00:03:42] ID="centos"
[2025-10-12 00:03:42] ID_LIKE="rhel fedora"
[2025-10-12 00:03:42] VERSION_ID="7"
[2025-10-12 00:03:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 00:03:42] ANSI_COLOR="0;31"
[2025-10-12 00:03:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 00:03:42] HOME_URL="https://www.centos.org/"
[2025-10-12 00:03:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 00:03:42] 
[2025-10-12 00:03:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 00:03:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 00:03:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 00:03:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 00:03:42] 
[2025-10-12 00:03:42] 2025-10-12 00:03:11,489 | INFO     | ***************************************
[2025-10-12 00:03:42] 2025-10-12 00:03:11,992 | INFO     | executing command: df -mP /var/lib/boinc/slots/22
[2025-10-12 00:03:42] 2025-10-12 00:03:12,020 | INFO     | sufficient remaining disk space (1725330096128 B)
[2025-10-12 00:03:42] 2025-10-12 00:03:12,020 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 00:03:42] 2025-10-12 00:03:12,020 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 00:03:42] 2025-10-12 00:03:12,020 | INFO     | update_server=False
[2025-10-12 00:03:42] 2025-10-12 00:03:12,021 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 00:03:42] 2025-10-12 00:03:12,021 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 00:03:42] 2025-10-12 00:03:12,021 | INFO     | aborting loop
[2025-10-12 00:03:42] 2025-10-12 00:03:12,173 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 00:03:42] 2025-10-12 00:03:12,701 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 00:03:42] 2025-10-12 00:03:12,702 | INFO     | all data control threads have been joined
[2025-10-12 00:03:42] 2025-10-12 00:03:12,712 | INFO     | all payload control threads have been joined
[2025-10-12 00:03:42] 2025-10-12 00:03:13,022 | INFO     | [job] retrieve thread has finished
[2025-10-12 00:03:42] 2025-10-12 00:03:13,023 | INFO     | [job] job monitor thread has finished
[2025-10-12 00:03:42] 2025-10-12 00:03:13,207 | INFO     | [job] validate thread has finished
[2025-10-12 00:03:42] 2025-10-12 00:03:13,463 | INFO     | [payload] failed_post thread has finished
[2025-10-12 00:03:42] 2025-10-12 00:03:13,471 | INFO     | [payload] validate_post thread has finished
[2025-10-12 00:03:42] 2025-10-12 00:03:13,502 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 00:03:42] 2025-10-12 00:03:13,526 | INFO     | all job control threads have been joined
[2025-10-12 00:03:42] 2025-10-12 00:03:13,619 | INFO     | [data] copytool_in thread has finished
[2025-10-12 00:03:42] 2025-10-12 00:03:13,662 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 00:03:42] 2025-10-12 00:03:13,708 | INFO     | [data] control thread has finished
[2025-10-12 00:03:42] 2025-10-12 00:03:13,718 | INFO     | [payload] control thread has finished
[2025-10-12 00:03:42] 2025-10-12 00:03:13,850 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 00:03:42] 2025-10-12 00:03:14,178 | INFO     | [data] copytool_out thread has finished
[2025-10-12 00:03:42] 2025-10-12 00:03:14,222 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 00:03:42] 2025-10-12 00:03:14,532 | INFO     | [job] control thread has finished
[2025-10-12 00:03:42] 2025-10-12 00:03:15,228 | INFO     | [job] queue monitor thread has finished
[2025-10-12 00:03:42] 2025-10-12 00:03:16,707 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 00:03:42] 2025-10-12 00:03:20,042 | INFO     | [monitor] cgroup control has ended
[2025-10-12 00:03:42] 2025-10-12 00:03:22,542 | INFO     | job.realtimelogging is not enabled
[2025-10-12 00:03:42] 2025-10-12 00:03:23,548 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 00:03:42] 2025-10-12 00:03:24,518 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139629888988992)>', '<ExcThread(monitor, started 139629151893248)>']
[2025-10-12 00:03:42] 2025-10-12 00:03:29,544 | INFO     | all workflow threads have been joined
[2025-10-12 00:03:42] 2025-10-12 00:03:29,544 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 00:03:42] 2025-10-12 00:03:29,544 | INFO     | traces error code: 0
[2025-10-12 00:03:42] 2025-10-12 00:03:29,545 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 00:03:42] 2025-10-12 00:03:41,538 | INFO     | PID=1392417 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 00:03:42] 2025-10-12 00:03:41,539 | INFO     | .. there are 17 such processes running
[2025-10-12 00:03:42] 2025-10-12 00:03:41,539 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 00:03:42] 2025-10-12 00:03:41,539 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 00:03:42] 2025-10-12 00:03:41,539 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 00:03:42] 2025-10-12 00:03:41,539 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 00:03:42] 2025-10-12 00:03:41,540 | INFO     | [monitor] control thread has ended
[2025-10-12 00:03:42] 2025-10-12 00:03:41,702 [wrapper] ==== pilot stdout END ====
[2025-10-12 00:03:42] 2025-10-12 00:03:41,706 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 00:03:42] 2025-10-12 00:03:41,709 [wrapper] pilotpid: 1392417
[2025-10-12 00:03:42] 2025-10-12 00:03:41,712 [wrapper] Pilot exit status: 0
[2025-10-12 00:03:42] 2025-10-12 00:03:41,726 [wrapper] pandaids: 6838603982
[2025-10-12 00:03:42] 2025-10-12 00:03:41,917 [wrapper] cleanup supervisor_pilot 1805722 1392418
[2025-10-12 00:03:42] 2025-10-12 00:03:41,922 [wrapper] Test setup, not cleaning
[2025-10-12 00:03:42] 2025-10-12 00:03:41,925 [wrapper] apfmon messages muted
[2025-10-12 00:03:42] 2025-10-12 00:03:41,929 [wrapper] ==== wrapper stdout END ====
[2025-10-12 00:03:42] 2025-10-12 00:03:41,933 [wrapper] ==== wrapper stderr END ====
[2025-10-12 00:03:42]  *** Error codes and diagnostics ***
[2025-10-12 00:03:42]     "exeErrorCode": 0,
[2025-10-12 00:03:42]     "exeErrorDiag": "",
[2025-10-12 00:03:42]     "pilotErrorCode": 0,
[2025-10-12 00:03:42]     "pilotErrorDiag": "",
[2025-10-12 00:03:42]  *** Listing of results directory ***
[2025-10-12 00:03:42] total 406540
[2025-10-12 00:03:42] -rw-r--r-- 1 boinc boinc      5112 Oct 11 15:20 queuedata.json
[2025-10-12 00:03:42] -rwx------ 1 boinc boinc     36292 Oct 11 15:21 runpilot2-wrapper.sh
[2025-10-12 00:03:42] -rw-r--r-- 1 boinc boinc    557409 Oct 11 15:21 pilot3.tar.gz
[2025-10-12 00:03:42] -rw-r--r-- 1 boinc boinc       100 Oct 11 23:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 00:03:42] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 23:11 run_atlas
[2025-10-12 00:03:42] -rw-r--r-- 1 boinc boinc       105 Oct 11 23:11 job.xml
[2025-10-12 00:03:42] -rw-r--r-- 2 boinc boinc    569679 Oct 11 23:11 input.tar.gz
[2025-10-12 00:03:42] -rw-r--r-- 2 boinc boinc 218524140 Oct 11 23:11 EVNT.46676267._002417.pool.root.1
[2025-10-12 00:03:42] -rw-r--r-- 2 boinc boinc     15120 Oct 11 23:11 start_atlas.sh
[2025-10-12 00:03:42] drwxrwx--x 2 boinc boinc      4096 Oct 11 23:11 shared
[2025-10-12 00:03:42] -rw-r--r-- 1 boinc boinc      9396 Oct 11 23:11 init_data.xml
[2025-10-12 00:03:42] -rw-r--r-- 1 boinc boinc         0 Oct 11 23:11 boinc_setup_complete
[2025-10-12 00:03:42] -rw-r--r-- 1 boinc boinc         0 Oct 11 23:11 boinc_lockfile
[2025-10-12 00:03:42] -rw-r--r-- 1 boinc boinc      2549 Oct 11 23:12 pandaJob.out
[2025-10-12 00:03:42] -rw------- 1 boinc boinc    975520 Oct 11 23:12 agis_schedconf.cvmfs.json
[2025-10-12 00:03:42] -rw------- 1 boinc boinc   1560580 Oct 11 23:12 agis_ddmendpoints.agis.ALL.json
[2025-10-12 00:03:42] drwx------ 5 boinc boinc      4096 Oct 11 23:12 pilot3
[2025-10-12 00:03:42] -rw------- 1 boinc boinc 192227373 Oct 12 00:02 HITS.46676269._060189.pool.root.1
[2025-10-12 00:03:42] -rw-r--r-- 1 boinc boinc       529 Oct 12 00:02 boinc_task_state.xml
[2025-10-12 00:03:42] -rw------- 1 boinc boinc      1028 Oct 12 00:02 memory_monitor_summary.json
[2025-10-12 00:03:42] -rw------- 1 boinc boinc    363476 Oct 12 00:02 log.46676269._060189.job.log.tgz.1
[2025-10-12 00:03:42] -rw------- 1 boinc boinc        95 Oct 12 00:02 pilot_heartbeat.json
[2025-10-12 00:03:42] -rw------- 1 boinc boinc      7744 Oct 12 00:03 heartbeat.json
[2025-10-12 00:03:42] -rw-r--r-- 1 boinc boinc      8192 Oct 12 00:03 boinc_mmap_file
[2025-10-12 00:03:42] -rw-r--r-- 1 boinc boinc        27 Oct 12 00:03 wrapper_checkpoint.txt
[2025-10-12 00:03:42] -rw------- 1 boinc boinc       823 Oct 12 00:03 pilotlog.txt
[2025-10-12 00:03:42] -rw------- 1 boinc boinc    455514 Oct 12 00:03 log.46676269._060189.job.log.1
[2025-10-12 00:03:42] -rw------- 1 boinc boinc       357 Oct 12 00:03 output.list
[2025-10-12 00:03:42] -rw-r--r-- 1 boinc boinc       620 Oct 12 00:03 runtime_log
[2025-10-12 00:03:42] -rw------- 1 boinc boinc    839680 Oct 12 00:03 result.tar.gz
[2025-10-12 00:03:42] -rw------- 1 boinc boinc       642 Oct 12 00:03 W6PLDmwaqR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm7ASMDmxxQQSo.diag
[2025-10-12 00:03:42] -rw-r--r-- 1 boinc boinc      8672 Oct 12 00:03 runtime_log.err
[2025-10-12 00:03:42] -rw-r--r-- 1 boinc boinc     22086 Oct 12 00:03 stderr.txt
[2025-10-12 00:03:42] HITS file was successfully produced:
[2025-10-12 00:03:42] -rw------- 1 boinc boinc 192227373 Oct 12 00:02 shared/HITS.pool.root.1
[2025-10-12 00:03:42]  *** Contents of shared directory: ***
[2025-10-12 00:03:42] total 402532
[2025-10-12 00:03:42] -rw-r--r-- 2 boinc boinc    569679 Oct 11 23:11 input.tar.gz
[2025-10-12 00:03:42] -rw-r--r-- 2 boinc boinc 218524140 Oct 11 23:11 ATLAS.root_0
[2025-10-12 00:03:42] -rw-r--r-- 2 boinc boinc     15120 Oct 11 23:11 start_atlas.sh
[2025-10-12 00:03:42] -rw------- 1 boinc boinc 192227373 Oct 12 00:02 HITS.pool.root.1
[2025-10-12 00:03:42] -rw------- 1 boinc boinc    839680 Oct 12 00:03 result.tar.gz
00:03:43 (1387735): run_atlas exited; CPU time 32439.944001
00:03:43 (1387735): called boinc_finish(0)

</stderr_txt>
]]>

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