Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-12 03:12:25 (3655235): vboxwrapper version 26210
2025-10-12 03:12:25 (3655235): BOINC client version: 8.2.5
2025-10-12 03:12:25 (3655235): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-10-12 03:12:25 (3655235): Successfully copied 'init_data.xml' to the shared directory.
2025-10-12 03:12:25 (3655235): Create VM. (boinc_6cfd810dad9ec4b9, slot#1)
2025-10-12 03:12:25 (3655235): Setting Memory Size for VM. (4300MB)
2025-10-12 03:12:25 (3655235): Setting CPU Count for VM. (3)
2025-10-12 03:12:25 (3655235): Setting Chipset Options for VM.
2025-10-12 03:12:25 (3655235): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-12 03:12:25 (3655235): Setting Boot Options for VM.
2025-10-12 03:12:25 (3655235): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-12 03:12:26 (3655235): Enabling VM Network Access.
2025-10-12 03:12:26 (3655235): Disabling USB Support for VM.
2025-10-12 03:12:26 (3655235): Disabling COM Port Support for VM.
2025-10-12 03:12:26 (3655235): Disabling LPT Port Support for VM.
2025-10-12 03:12:26 (3655235): Disabling Audio Support for VM.
2025-10-12 03:12:26 (3655235): Disabling Clipboard Support for VM.
2025-10-12 03:12:26 (3655235): Disabling Drag and Drop Support for VM.
2025-10-12 03:12:26 (3655235): Adding storage controller(s) to VM.
2025-10-12 03:12:26 (3655235): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-12 03:12:26 (3655235): Adding VirtualBox Guest Additions to VM.
2025-10-12 03:12:26 (3655235): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-12 03:12:26 (3655235): forwarding host port 47601 to guest port 80
2025-10-12 03:12:26 (3655235): Enabling remote desktop for VM.
2025-10-12 03:12:26 (3655235): Required extension pack not installed, remote desktop not enabled.
2025-10-12 03:12:26 (3655235): Enabling shared directory for VM.
2025-10-12 03:12:27 (3655235): Starting VM using VBoxManage interface. (boinc_6cfd810dad9ec4b9, slot#1)
2025-10-12 03:12:28 (3655235): Successfully started VM. (PID = '3655842')
2025-10-12 03:12:28 (3655235): Reporting VM Process ID to BOINC.
2025-10-12 03:12:28 (3655235): Guest Log: BIOS: VirtualBox 7.2.2
2025-10-12 03:12:28 (3655235): Guest Log: CPUID EDX: 0x178bfbff
2025-10-12 03:12:28 (3655235): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-12 03:12:28 (3655235): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-12 03:12:28 (3655235): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-12 03:12:28 (3655235): Detected: Web Application Enabled (http://localhost:47601)
2025-10-12 03:12:28 (3655235): Preference change detected
2025-10-12 03:12:28 (3655235): Setting CPU throttle for VM. (100%)
2025-10-12 03:12:28 (3655235): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 30 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-12 03:12:30 (3655235): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-12 03:12:30 (3655235): Guest Log: BIOS: Booting from Hard Disk...
2025-10-12 03:12:33 (3655235): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-12 03:12:33 (3655235): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-12 03:12:33 (3655235): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-12 03:12:40 (3655235): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-12 03:12:40 (3655235): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-12 03:12:47 (3655235): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-12 03:12:47 (3655235): Guest Log: 00:00:00.000384 main     Log opened 2025-10-12T01:12:44.672810000Z
2025-10-12 03:12:47 (3655235): Guest Log: 00:00:00.000576 main     OS Product: Linux
2025-10-12 03:12:47 (3655235): Guest Log: 00:00:00.000624 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-12 03:12:47 (3655235): Guest Log: 00:00:00.000663 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-12 03:12:47 (3655235): Guest Log: 00:00:00.000700 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-12 03:12:47 (3655235): Guest Log: 00:00:00.000701 main     Process ID: 1289
2025-10-12 03:12:47 (3655235): Guest Log: 00:00:00.000702 main     Package type: LINUX_64BITS_GENERIC
2025-10-12 03:12:47 (3655235): Guest Log: 00:00:00.002253 main     5.2.32 r132073 started. Verbose level = 0
2025-10-12 03:12:47 (3655235): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-12 03:12:47 (3655235): Guest Log: [INFO] Mounting shared directory
2025-10-12 03:12:47 (3655235): Guest Log: [INFO] Checking for init_data.xml
2025-10-12 03:12:49 (3655235): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-12 03:12:49 (3655235): Guest Log: [INFO] Detected branch: prod
2025-10-12 03:12:49 (3655235): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-12 03:12:49 (3655235): Guest Log: Copying input files
2025-10-12 03:12:51 (3655235): Guest Log: Copied input files into RunAtlas.
2025-10-12 03:12:51 (3655235): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-12 03:12:51 (3655235): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-12 03:12:51 (3655235): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-12 03:12:51 (3655235): Guest Log: Further information can be found at the LHC@home message board.
2025-10-12 03:12:59 (3655235): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-12 03:12:59 (3655235): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-12 03:12:59 (3655235): Guest Log: 2.6.3.0 1562 0 30180 151602 3 1 3117639 4096000 0 65024 1 0 n/a 1 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-12 03:13:02 (3655235): Guest Log: copied the webapp to /var/www
2025-10-12 03:13:02 (3655235): Guest Log: ATHENA_PROC_NUMBER=3
2025-10-12 03:13:02 (3655235): Guest Log: ATHENA_CORE_NUMBER=3
2025-10-12 03:13:02 (3655235): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-12 03:13:02 (3655235): Guest Log:  *** Starting ATLAS job. (PandaID=6838454828 taskID=46676269) ***
2025-10-12 04:51:28 (3655235): Status Report: Elapsed Time: '6000.000000'
2025-10-12 04:51:28 (3655235): Status Report: CPU Time: '16977.930000'
2025-10-12 05:49:03 (3655235): Guest Log:  *** Job finished ***
2025-10-12 05:49:03 (3655235): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-12 05:49:03 (3655235): Guest Log: 2025-10-12 03:48:54,777 | INFO     | PID=5946 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-12 05:49:03 (3655235): Guest Log: 2025-10-12 03:48:54,777 | INFO     | found 0 job(s) in 20 queues
2025-10-12 05:49:03 (3655235): Guest Log: 2025-10-12 03:48:54,777 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-12 05:49:03 (3655235): Guest Log: 2025-10-12 03:48:54,777 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-12 05:49:03 (3655235): Guest Log: 2025-10-12 03:48:54,777 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-12 05:49:03 (3655235): Guest Log: 2025-10-12 03:48:54,777 | INFO     | [monitor] control thread has ended
2025-10-12 05:49:03 (3655235): Guest Log: 2025-10-12 03:48:57,038 | INFO     | all workflow threads have been joined
2025-10-12 05:49:03 (3655235): Guest Log: 2025-10-12 03:48:57,039 | INFO     | end of generic workflow (traces error code: 0)
2025-10-12 05:49:03 (3655235): Guest Log: 2025-10-12 03:48:57,039 | INFO     | traces error code: 0
2025-10-12 05:49:03 (3655235): Guest Log: 2025-10-12 03:48:57,040 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-12 05:49:03 (3655235): Guest Log: 2025-10-12 03:48:57,117 [wrapper] ==== pilot stdout END ====
2025-10-12 05:49:03 (3655235): Guest Log: 2025-10-12 03:48:57,123 [wrapper] ==== wrapper stdout RESUME ====
2025-10-12 05:49:03 (3655235): Guest Log: 2025-10-12 03:48:57,130 [wrapper] pilotpid: 5946
2025-10-12 05:49:03 (3655235): Guest Log: 2025-10-12 03:48:57,137 [wrapper] Pilot exit status: 0
2025-10-12 05:49:03 (3655235): Guest Log: 2025-10-12 03:48:57,185 [wrapper] pandaids: 6838454828
2025-10-12 05:49:03 (3655235): Guest Log: 2025-10-12 03:48:57,225 [wrapper] cleanup supervisor_pilot  7835 5947
2025-10-12 05:49:03 (3655235): Guest Log: 2025-10-12 03:48:57,234 [wrapper] Test setup, not cleaning
2025-10-12 05:49:03 (3655235): Guest Log: 2025-10-12 03:48:57,243 [wrapper] apfmon messages muted
2025-10-12 05:49:03 (3655235): Guest Log: 2025-10-12 03:48:57,251 [wrapper] ==== wrapper stdout END ====
2025-10-12 05:49:03 (3655235): Guest Log: 2025-10-12 03:48:57,258 [wrapper] ==== wrapper stderr END ====
2025-10-12 05:49:03 (3655235): Guest Log:  *** Error codes and diagnostics ***
2025-10-12 05:49:03 (3655235): Guest Log:     "exeErrorCode": 0,
2025-10-12 05:49:03 (3655235): Guest Log:     "exeErrorDiag": "",
2025-10-12 05:49:03 (3655235): Guest Log:     "pilotErrorCode": 0,
2025-10-12 05:49:03 (3655235): Guest Log:     "pilotErrorDiag": "",
2025-10-12 05:49:03 (3655235): Guest Log:  *** Listing of results directory ***
2025-10-12 05:49:03 (3655235): Guest Log: total 203892
2025-10-12 05:49:03 (3655235): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 11 14:01 pilot3.tar.gz
2025-10-12 05:49:03 (3655235): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 11 14:50 queuedata.json
2025-10-12 05:49:03 (3655235): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 11 14:50 runpilot2-wrapper.sh
2025-10-12 05:49:03 (3655235): Guest Log: -rw-r--r--. 1 atlas atlas    569680 Oct 12 01:12 input.tar.gz
2025-10-12 05:49:03 (3655235): Guest Log: -rw-r--r--. 1 atlas atlas     15120 Oct 12 01:12 start_atlas.sh
2025-10-12 05:49:03 (3655235): Guest Log: -rw-r--r--. 1 atlas atlas      8907 Oct 12 01:12 init_data.xml
2025-10-12 05:49:03 (3655235): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 12 01:12 EVNT.46676267._002402.pool.root.1 -> /data/./ATLAS.root_0
2025-10-12 05:49:03 (3655235): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 12 01:13 pandaJob.out
2025-10-12 05:49:03 (3655235): Guest Log: -rw-------. 1 atlas atlas    975496 Oct 12 01:13 agis_schedconf.cvmfs.json
2025-10-12 05:49:03 (3655235): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 12 01:13 agis_ddmendpoints.agis.ALL.json
2025-10-12 05:49:03 (3655235): Guest Log: drwx------. 5 atlas atlas      4096 Oct 12 01:13 pilot3
2025-10-12 05:49:03 (3655235): Guest Log: -rw-------. 1 atlas atlas 201760634 Oct 12 03:47 HITS.46676269._059514.pool.root.1
2025-10-12 05:49:03 (3655235): Guest Log: -rw-------. 1 atlas atlas      1024 Oct 12 03:48 memory_monitor_summary.json
2025-10-12 05:49:03 (3655235): Guest Log: -rw-------. 1 atlas atlas    314774 Oct 12 03:48 log.46676269._059514.job.log.tgz.1
2025-10-12 05:49:03 (3655235): Guest Log: -rw-------. 1 atlas atlas      7784 Oct 12 03:48 heartbeat.json
2025-10-12 05:49:03 (3655235): Guest Log: -rw-------. 1 atlas atlas        95 Oct 12 03:48 pilot_heartbeat.json
2025-10-12 05:49:03 (3655235): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 12 03:48 pilotlog.txt
2025-10-12 05:49:03 (3655235): Guest Log: -rw-------. 1 atlas atlas   1281301 Oct 12 03:48 log.46676269._059514.job.log.1
2025-10-12 05:49:03 (3655235): Guest Log: -rw-------. 1 atlas atlas       357 Oct 12 03:48 output.list
2025-10-12 05:49:03 (3655235): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 12 03:48 runtime_log
2025-10-12 05:49:03 (3655235): Guest Log: -rw-------. 1 atlas atlas   1617920 Oct 12 03:48 result.tar.gz
2025-10-12 05:49:03 (3655235): Guest Log: -rw-------. 1 atlas atlas       659 Oct 12 03:48 uKTKDmx6pR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmD5RMDmSjn6Tn.diag
2025-10-12 05:49:03 (3655235): Guest Log: -rw-r--r--. 1 atlas atlas      8657 Oct 12 03:48 runtime_log.err
2025-10-12 05:49:03 (3655235): Guest Log: Looking for outputfile HITS.46676269._059514.pool.root.1
2025-10-12 05:49:03 (3655235): Guest Log: HITS file was successfully produced
2025-10-12 05:49:03 (3655235): Guest Log: -rw-------. 1 atlas atlas 201760634 Oct 12 03:47 /home/atlas/RunAtlas/HITS.46676269._059514.pool.root.1
2025-10-12 05:49:03 (3655235): Guest Log: Successfully finished the ATLAS job!
2025-10-12 05:49:03 (3655235): Guest Log: Copying the results back to the shared directory!
2025-10-12 05:49:03 (3655235): Guest Log:  *** Contents of shared directory: ***
2025-10-12 05:49:03 (3655235): Guest Log: total 216140
2025-10-12 05:49:03 (3655235): Guest Log: -rw-r--r--. 1 root root 219106483 Oct 12 01:12 ATLAS.root_0
2025-10-12 05:49:03 (3655235): Guest Log: -rw-r--r--. 1 root root      8907 Oct 12 01:12 init_data.xml
2025-10-12 05:49:03 (3655235): Guest Log: -rw-r--r--. 1 root root    569680 Oct 12 01:12 input.tar.gz
2025-10-12 05:49:03 (3655235): Guest Log: -rw-r--r--. 1 root root   1617920 Oct 12  2025 result.tar.gz
2025-10-12 05:49:03 (3655235): Guest Log: -rw-r--r--. 1 root root     15120 Oct 12 01:12 start_atlas.sh
2025-10-12 05:49:03 (3655235): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-12 05:49:03 (3655235): VM Completion File Detected.
2025-10-12 05:49:03 (3655235): Powering off VM.
2025-10-12 05:49:04 (3655235): Successfully stopped VM.
2025-10-12 05:49:04 (3655235): Deregistering VM. (boinc_6cfd810dad9ec4b9, slot#1)
2025-10-12 05:49:04 (3655235): Removing network bandwidth throttle group from VM.
2025-10-12 05:49:04 (3655235): Removing VM from VirtualBox.
2025-10-12 05:49:09 (3655235): called boinc_finish(0)

</stderr_txt>
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