Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:17:24 (3995983): wrapper (7.7.26015): starting
19:17:24 (3995983): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 19:17:24] Arguments: --nthreads 8
[2025-10-11 19:17:24] Threads: 8
[2025-10-11 19:17:24] Checking for CVMFS
[2025-10-11 19:17:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 19:17:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 19:17:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 19:17:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 19:17:24] 2.13.2.0 5060 4889 98792 151600 0 65 39970907 40960000 24933 16776704 0 15167749 99.854 5341933 36455 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 19:17:24] CVMFS is ok
[2025-10-11 19:17:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 19:17:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 19:17:24] Further information can be found at the LHC@home message board.
[2025-10-11 19:17:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 19:17:24] Checking for apptainer binary...
[2025-10-11 19:17:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 19:17:24] Running /usr/bin/apptainer --version
[2025-10-11 19:17:25] apptainer version 1.4.3-1.el9
[2025-10-11 19:17:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 19:17:25] c-212-3.aglt2.org
[2025-10-11 19:17:25] apptainer works
[2025-10-11 19:17:25] Set ATHENA_PROC_NUMBER=8
[2025-10-11 19:17:25] Set ATHENA_CORE_NUMBER=8
[2025-10-11 19:17:25] Starting ATLAS job with PandaID=6838452925
[2025-10-11 19:17:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:20:28 (4018731): wrapper (7.7.26015): starting
19:20:28 (4018731): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 19:20:28] Arguments: --nthreads 8
[2025-10-11 19:20:28] Threads: 8
[2025-10-11 19:20:28] This job has been restarted, cleaning up previous attempt
[2025-10-11 19:20:28] Checking for CVMFS
[2025-10-11 19:20:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 19:20:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 19:20:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 19:20:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 19:20:28] 2.13.2.0 5060 4892 98764 151600 1 196 39970933 40960000 21269 16776704 0 15212820 99.854 5341933 36454 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 19:20:28] CVMFS is ok
[2025-10-11 19:20:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 19:20:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 19:20:29] Further information can be found at the LHC@home message board.
[2025-10-11 19:20:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 19:20:29] Checking for apptainer binary...
[2025-10-11 19:20:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 19:20:29] Running /usr/bin/apptainer --version
[2025-10-11 19:20:29] apptainer version 1.4.3-1.el9
[2025-10-11 19:20:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 19:20:29] c-212-3.aglt2.org
[2025-10-11 19:20:29] apptainer works
[2025-10-11 19:20:29] Set ATHENA_PROC_NUMBER=8
[2025-10-11 19:20:29] Set ATHENA_CORE_NUMBER=8
[2025-10-11 19:20:29] Starting ATLAS job with PandaID=6838452925
[2025-10-11 19:20:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 23:41:17]  *** The last 200 lines of the pilot log: ***
[2025-10-11 23:41:17] 2025-10-12 03:40:22,896 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 23:41:17] 2025-10-12 03:40:22,896 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 23:41:17] 2025-10-12 03:40:22,896 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 23:41:17] 2025-10-12 03:40:22,939 | INFO     | fitting pss+swap vs Time
[2025-10-11 23:41:17] 2025-10-12 03:40:22,940 | INFO     | sum of square deviations: 5141484000.1411495
[2025-10-11 23:41:17] 2025-10-12 03:40:22,941 | INFO     | sum of deviations: -8296411605.423548
[2025-10-11 23:41:17] 2025-10-12 03:40:22,941 | INFO     | mean x: 1760232623.1058824
[2025-10-11 23:41:17] 2025-10-12 03:40:22,942 | INFO     | mean y: 2488144.349019608
[2025-10-11 23:41:17] 2025-10-12 03:40:22,942 | INFO     | -- intersect: 2842838199.3486776
[2025-10-11 23:41:17] 2025-10-12 03:40:22,942 | INFO     | intersect: 2842838199.3486776
[2025-10-11 23:41:17] 2025-10-12 03:40:22,965 | INFO     | chi2: 2.8731032845630926
[2025-10-11 23:41:17] 2025-10-12 03:40:22,966 | INFO     | sum of square deviations: 4844937837.584021
[2025-10-11 23:41:17] 2025-10-12 03:40:22,967 | INFO     | sum of deviations: 25667316783.040012
[2025-10-11 23:41:17] 2025-10-12 03:40:22,967 | INFO     | mean x: 1760232470.608
[2025-10-11 23:41:17] 2025-10-12 03:40:22,967 | INFO     | mean y: 2505401.48
[2025-10-11 23:41:17] 2025-10-12 03:40:22,967 | INFO     | -- intersect: -9322783374.034695
[2025-10-11 23:41:17] 2025-10-12 03:40:22,967 | INFO     | intersect: -9322783374.034695
[2025-10-11 23:41:17] 2025-10-12 03:40:22,968 | INFO     | chi2: 1.2864291095475624
[2025-10-11 23:41:17] 2025-10-12 03:40:22,968 | INFO     | current chi2=1.2864291095475624 (change=55.22510045289975 %)
[2025-10-11 23:41:17] 2025-10-12 03:40:22,968 | INFO     | sum of square deviations: 4560019800.024504
[2025-10-11 23:41:17] 2025-10-12 03:40:22,990 | INFO     | sum of deviations: 24965405482.469376
[2025-10-11 23:41:17] 2025-10-12 03:40:22,991 | INFO     | mean x: 1760232318.110204
[2025-10-11 23:41:17] 2025-10-12 03:40:22,991 | INFO     | mean y: 2505025.612244898
[2025-10-11 23:41:17] 2025-10-12 03:40:22,991 | INFO     | -- intersect: -9634495577.92288
[2025-10-11 23:41:17] 2025-10-12 03:40:22,991 | INFO     | intersect: -9634495577.92288
[2025-10-11 23:41:17] 2025-10-12 03:40:22,991 | INFO     | chi2: 1.2869153182923367
[2025-10-11 23:41:17] 2025-10-12 03:40:22,991 | INFO     | current chi2=1.2869153182923367 (change=-0.03779522254011657 %)
[2025-10-11 23:41:17] 2025-10-12 03:40:22,991 | INFO     | right removable region: 244
[2025-10-11 23:41:17] 2025-10-12 03:40:22,992 | INFO     | sum of square deviations: 4844921367.584021
[2025-10-11 23:41:17] 2025-10-12 03:40:22,993 | INFO     | sum of deviations: -44091314932.456
[2025-10-11 23:41:17] 2025-10-12 03:40:22,993 | INFO     | mean x: 1760232775.608
[2025-10-11 23:41:17] 2025-10-12 03:40:22,993 | INFO     | mean y: 2506392.128
[2025-10-11 23:41:17] 2025-10-12 03:40:22,993 | INFO     | -- intersect: 16021544014.293816
[2025-10-11 23:41:17] 2025-10-12 03:40:22,993 | INFO     | intersect: 16021544014.293816
[2025-10-11 23:41:17] 2025-10-12 03:40:22,993 | INFO     | chi2: 1.6295832021159402
[2025-10-11 23:41:17] 2025-10-12 03:40:22,994 | INFO     | current chi2=1.6295832021159402 (change=43.281426363210336 %)
[2025-10-11 23:41:17] 2025-10-12 03:40:22,994 | INFO     | sum of square deviations: 4559986860.024504
[2025-10-11 23:41:17] 2025-10-12 03:40:23,020 | INFO     | sum of deviations: -44113393274.17143
[2025-10-11 23:41:17] 2025-10-12 03:40:23,020 | INFO     | mean x: 1760232928.110204
[2025-10-11 23:41:17] 2025-10-12 03:40:23,020 | INFO     | mean y: 2506401.2285714285
[2025-10-11 23:41:17] 2025-10-12 03:40:23,020 | INFO     | -- intersect: 17031030779.79542
[2025-10-11 23:41:17] 2025-10-12 03:40:23,020 | INFO     | intersect: 17031030779.79542
[2025-10-11 23:41:17] 2025-10-12 03:40:23,021 | INFO     | chi2: 1.6291814643577116
[2025-10-11 23:41:17] 2025-10-12 03:40:23,021 | INFO     | current chi2=1.6291814643577116 (change=0.024652792057930258 %)
[2025-10-11 23:41:17] 2025-10-12 03:40:23,021 | INFO     | left removable region: 20
[2025-10-11 23:41:17] 2025-10-12 03:40:23,021 | INFO     | sum of square deviations: 3485028816.7455306
[2025-10-11 23:41:17] 2025-10-12 03:40:23,040 | INFO     | sum of deviations: -9434419232.415173
[2025-10-11 23:41:17] 2025-10-12 03:40:23,040 | INFO     | mean x: 1760232897.6205356
[2025-10-11 23:41:17] 2025-10-12 03:40:23,040 | INFO     | mean y: 2523969.9598214286
[2025-10-11 23:41:17] 2025-10-12 03:40:23,040 | INFO     | -- intersect: 4767699805.248663
[2025-10-11 23:41:17] 2025-10-12 03:40:23,040 | INFO     | intersect: 4767699805.248663
[2025-10-11 23:41:17] 2025-10-12 03:40:23,041 | INFO     | chi2: 0.011989944280139464
[2025-10-11 23:41:17] 2025-10-12 03:40:23,041 | INFO     | -- intersect: 4767699805.248663
[2025-10-11 23:41:17] 2025-10-12 03:40:23,041 | INFO     | current memory leak: -2.71 B/s (using 224 data points, chi2=0.01)
[2025-10-11 23:41:17] 2025-10-12 03:40:23,041 | INFO     | could have reported an average CPU frequency of 3031 MHz (12 samples)
[2025-10-11 23:41:17] 2025-10-12 03:40:23,042 | INFO     | ..............................
[2025-10-11 23:41:17] 2025-10-12 03:40:23,042 | INFO     | . Timing measurements:
[2025-10-11 23:41:17] 2025-10-12 03:40:23,042 | INFO     | . get job = 0 s
[2025-10-11 23:41:17] 2025-10-12 03:40:23,042 | INFO     | . initial setup = 1 s
[2025-10-11 23:41:17] 2025-10-12 03:40:23,042 | INFO     | . payload setup = 7 s
[2025-10-11 23:41:17] 2025-10-12 03:40:23,042 | INFO     | . stage-in = 0 s
[2025-10-11 23:41:17] 2025-10-12 03:40:23,042 | INFO     | . payload execution = 15520 s
[2025-10-11 23:41:17] 2025-10-12 03:40:23,042 | INFO     | . stage-out = 4 s
[2025-10-11 23:41:17] 2025-10-12 03:40:23,042 | INFO     | . log creation = 0 s
[2025-10-11 23:41:17] 2025-10-12 03:40:23,042 | INFO     | ..............................
[2025-10-11 23:41:17] 2025-10-12 03:40:23,448 | INFO     | 
[2025-10-11 23:41:17] 2025-10-12 03:40:23,449 | INFO     | job summary report
[2025-10-11 23:41:17] 2025-10-12 03:40:23,449 | INFO     | --------------------------------------------------
[2025-10-11 23:41:17] 2025-10-12 03:40:23,449 | INFO     | PanDA job id: 6838452925
[2025-10-11 23:41:17] 2025-10-12 03:40:23,450 | INFO     | task id: 46676269
[2025-10-11 23:41:17] 2025-10-12 03:40:23,450 | INFO     | errors: (none)
[2025-10-11 23:41:17] 2025-10-12 03:40:23,450 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 23:41:17] 2025-10-12 03:40:23,450 | INFO     | pilot state: finished 
[2025-10-11 23:41:17] 2025-10-12 03:40:23,450 | INFO     | transexitcode: 0
[2025-10-11 23:41:17] 2025-10-12 03:40:23,450 | INFO     | exeerrorcode: 0
[2025-10-11 23:41:17] 2025-10-12 03:40:23,450 | INFO     | exeerrordiag: 
[2025-10-11 23:41:17] 2025-10-12 03:40:23,450 | INFO     | exitcode: 0
[2025-10-11 23:41:17] 2025-10-12 03:40:23,450 | INFO     | exitmsg: OK
[2025-10-11 23:41:17] 2025-10-12 03:40:23,475 | INFO     | cpuconsumptiontime: 36361 s
[2025-10-11 23:41:17] 2025-10-12 03:40:23,475 | INFO     | nevents: 400
[2025-10-11 23:41:17] 2025-10-12 03:40:23,475 | INFO     | neventsw: 0
[2025-10-11 23:41:17] 2025-10-12 03:40:23,476 | INFO     | pid: 4068521
[2025-10-11 23:41:17] 2025-10-12 03:40:23,476 | INFO     | pgrp: 4068521
[2025-10-11 23:41:17] 2025-10-12 03:40:23,476 | INFO     | corecount: 8
[2025-10-11 23:41:17] 2025-10-12 03:40:23,476 | INFO     | event service: False
[2025-10-11 23:41:17] 2025-10-12 03:40:23,476 | INFO     | sizes: {0: 2348806, 6: 2349068, 11: 2349096, 15533: 2380340, 15534: 2380339, 15540: 2389393, 15542: 2389577, 15563: 2389771}
[2025-10-11 23:41:17] 2025-10-12 03:40:23,476 | INFO     | --------------------------------------------------
[2025-10-11 23:41:17] 2025-10-12 03:40:23,476 | INFO     | 
[2025-10-11 23:41:17] 2025-10-12 03:40:23,476 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 23:41:17] 2025-10-12 03:40:23,747 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 23:41:17] 2025-10-12 03:40:23,748 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 23:41:17] 2025-10-12 03:40:23,748 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 23:41:17] 2025-10-12 03:40:23,748 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 23:41:17] 2025-10-12 03:40:23,748 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 23:41:17] 2025-10-12 03:40:23,748 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 23:41:17] 2025-10-12 03:40:23,748 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 23:41:17] 2025-10-12 03:40:23,748 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 23:41:17] 2025-10-12 03:40:23,748 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 23:41:17] 2025-10-12 03:40:23,748 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 23:41:17] 2025-10-12 03:40:23,748 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 23:41:17] 2025-10-12 03:40:23,748 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 23:41:17] 2025-10-12 03:40:23,749 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 23:41:17] 2025-10-12 03:40:23,749 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 23:41:17] 2025-10-12 03:40:23,749 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 23:41:17] 2025-10-12 03:40:23,749 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 23:41:17] 2025-10-12 03:40:23,749 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 23:41:17] 2025-10-12 03:40:23,749 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 23:41:17] 2025-10-12 03:40:23,749 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 23:41:17] 2025-10-12 03:40:23,749 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 23:41:17] 2025-10-12 03:40:23,749 | INFO     | job 6838452925 has completed (purged errors)
[2025-10-11 23:41:17] 2025-10-12 03:40:23,749 | INFO     | overall cleanup function is called
[2025-10-11 23:41:17] 2025-10-12 03:40:24,781 | INFO     | --- collectZombieJob: --- 10, [4068521]
[2025-10-11 23:41:17] 2025-10-12 03:40:24,781 | INFO     | zombie collector waiting for pid 4068521
[2025-10-11 23:41:17] 2025-10-12 03:40:24,781 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 23:41:17] 2025-10-12 03:40:24,782 | INFO     | collected zombie processes
[2025-10-11 23:41:17] 2025-10-12 03:40:24,782 | INFO     | will attempt to kill all subprocesses of pid=4068521
[2025-10-11 23:41:17] 2025-10-12 03:40:26,214 | INFO     | process IDs to be killed: [4068521] (in reverse order)
[2025-10-11 23:41:17] 2025-10-12 03:40:26,492 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 23:41:17] 2025-10-12 03:40:26,493 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 23:41:17] 2025-10-12 03:40:26,525 | INFO     | did not find any defunct processes belonging to 4068521
[2025-10-11 23:41:17] 2025-10-12 03:40:26,568 | INFO     | did not find any defunct processes belonging to 4068521
[2025-10-11 23:41:17] 2025-10-12 03:40:26,569 | INFO     | ready for new job
[2025-10-11 23:41:17] 2025-10-12 03:40:26,569 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 23:41:17] 2025-10-12 03:40:26,572 | INFO     | ***************************************
[2025-10-11 23:41:17] 2025-10-12 03:40:26,572 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 23:41:17] 2025-10-12 03:40:26,572 | INFO     | ***************************************
[2025-10-11 23:41:17] 2025-10-12 03:40:26,572 | INFO     | 
[2025-10-11 23:41:17] 2025-10-12 03:40:26,602 | INFO     | architecture information:
[2025-10-11 23:41:17] 2025-10-12 03:40:26,602 | INFO     | executing command: cat /etc/os-release
[2025-10-11 23:41:17] 2025-10-12 03:40:26,621 | INFO     | cat /etc/os-release:
[2025-10-11 23:41:17] NAME="CentOS Linux"
[2025-10-11 23:41:17] VERSION="7 (Core)"
[2025-10-11 23:41:17] ID="centos"
[2025-10-11 23:41:17] ID_LIKE="rhel fedora"
[2025-10-11 23:41:17] VERSION_ID="7"
[2025-10-11 23:41:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 23:41:17] ANSI_COLOR="0;31"
[2025-10-11 23:41:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 23:41:17] HOME_URL="https://www.centos.org/"
[2025-10-11 23:41:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 23:41:17] 
[2025-10-11 23:41:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 23:41:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 23:41:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 23:41:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 23:41:17] 
[2025-10-11 23:41:17] 2025-10-12 03:40:26,622 | INFO     | ***************************************
[2025-10-11 23:41:17] 2025-10-12 03:40:27,125 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 23:41:17] 2025-10-12 03:40:27,232 | INFO     | sufficient remaining disk space (127494258688 B)
[2025-10-11 23:41:17] 2025-10-12 03:40:27,233 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 23:41:17] 2025-10-12 03:40:27,233 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 23:41:17] 2025-10-12 03:40:27,233 | INFO     | update_server=False
[2025-10-11 23:41:17] 2025-10-12 03:40:27,233 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 23:41:17] 2025-10-12 03:40:27,234 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 23:41:17] 2025-10-12 03:40:27,488 | INFO     | all job control threads have been joined
[2025-10-11 23:41:17] 2025-10-12 03:40:27,803 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:41:17] 2025-10-12 03:40:27,803 | INFO     | aborting loop
[2025-10-11 23:41:17] 2025-10-12 03:40:27,892 | INFO     | all payload control threads have been joined
[2025-10-11 23:41:17] 2025-10-12 03:40:28,069 | INFO     | all data control threads have been joined
[2025-10-11 23:41:17] 2025-10-12 03:40:28,239 | INFO     | [job] retrieve thread has finished
[2025-10-11 23:41:17] 2025-10-12 03:40:28,250 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 23:41:17] 2025-10-12 03:40:28,258 | INFO     | [job] validate thread has finished
[2025-10-11 23:41:17] 2025-10-12 03:40:28,262 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 23:41:17] 2025-10-12 03:40:28,263 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 23:41:17] 2025-10-12 03:40:28,366 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 23:41:17] 2025-10-12 03:40:28,499 | INFO     | [job] control thread has finished
[2025-10-11 23:41:17] 2025-10-12 03:40:28,508 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:41:17] 2025-10-12 03:40:28,809 | INFO     | [job] job monitor thread has finished
[2025-10-11 23:41:17] 2025-10-12 03:40:28,898 | INFO     | [payload] control thread has finished
[2025-10-11 23:41:17] 2025-10-12 03:40:29,075 | INFO     | [data] control thread has finished
[2025-10-11 23:41:17] 2025-10-12 03:40:29,123 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 23:41:17] 2025-10-12 03:40:29,191 | INFO     | [data] copytool_in thread has finished
[2025-10-11 23:41:17] 2025-10-12 03:40:29,277 | INFO     | [payload] validate_post thread has finished
[2025-10-11 23:41:17] 2025-10-12 03:40:29,278 | INFO     | [payload] failed_post thread has finished
[2025-10-11 23:41:17] 2025-10-12 03:40:29,514 | INFO     | [job] queue monitor thread has finished
[2025-10-11 23:41:17] 2025-10-12 03:40:30,374 | INFO     | [data] copytool_out thread has finished
[2025-10-11 23:41:17] 2025-10-12 03:40:31,254 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 23:41:17] 2025-10-12 03:40:59,035 | INFO     | PID=4037048 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 23:41:17] 2025-10-12 03:40:59,035 | INFO     | .. there are 23 such processes running
[2025-10-11 23:41:17] 2025-10-12 03:40:59,036 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 23:41:17] 2025-10-12 03:40:59,036 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 23:41:17] 2025-10-12 03:40:59,036 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 23:41:17] 2025-10-12 03:41:09,177 | INFO     | [monitor] cgroup control has ended
[2025-10-11 23:41:17] 2025-10-12 03:41:10,527 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139856087643968)>', '<ExcThread(monitor, started 139855585593088)>']
[2025-10-11 23:41:17] 2025-10-12 03:41:11,133 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 23:41:17] 2025-10-12 03:41:11,133 | INFO     | [monitor] control thread has ended
[2025-10-11 23:41:17] 2025-10-12 03:41:15,585 | INFO     | all workflow threads have been joined
[2025-10-11 23:41:17] 2025-10-12 03:41:15,585 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 23:41:17] 2025-10-12 03:41:15,586 | INFO     | traces error code: 0
[2025-10-11 23:41:17] 2025-10-12 03:41:15,586 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 23:41:17] 2025-10-12 03:41:16,720 [wrapper] ==== pilot stdout END ====
[2025-10-11 23:41:17] 2025-10-12 03:41:16,776 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 23:41:17] 2025-10-12 03:41:16,821 [wrapper] pilotpid: 4037048
[2025-10-11 23:41:17] 2025-10-12 03:41:16,836 [wrapper] Pilot exit status: 0
[2025-10-11 23:41:17] 2025-10-12 03:41:16,882 [wrapper] pandaids: 6838452925 6838452925
[2025-10-11 23:41:17] 2025-10-12 03:41:17,566 [wrapper] cleanup supervisor_pilot  760383 4037051
[2025-10-11 23:41:17] 2025-10-12 03:41:17,585 [wrapper] Test setup, not cleaning
[2025-10-11 23:41:17] 2025-10-12 03:41:17,602 [wrapper] apfmon messages muted
[2025-10-11 23:41:17] 2025-10-12 03:41:17,748 [wrapper] ==== wrapper stdout END ====
[2025-10-11 23:41:17] 2025-10-12 03:41:17,751 [wrapper] ==== wrapper stderr END ====
[2025-10-11 23:41:17]  *** Error codes and diagnostics ***
[2025-10-11 23:41:17]     "exeErrorCode": 0,
[2025-10-11 23:41:17]     "exeErrorDiag": "",
[2025-10-11 23:41:17]     "pilotErrorCode": 0,
[2025-10-11 23:41:17]     "pilotErrorDiag": "",
[2025-10-11 23:41:17]  *** Listing of results directory ***
[2025-10-11 23:41:17] total 628580
[2025-10-11 23:41:17] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-11 23:41:17] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 09:56 pilot3.tar.gz
[2025-10-11 23:41:17] -rwx------. 1 boincer umatlas     36292 Oct 11 10:00 runpilot2-wrapper.sh
[2025-10-11 23:41:17] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 10:00 queuedata.json
[2025-10-11 23:41:17] -rw-r--r--. 1 boincer umatlas       100 Oct 11 19:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 23:41:17] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 19:17 run_atlas
[2025-10-11 23:41:17] -rw-r--r--. 1 boincer umatlas       105 Oct 11 19:17 job.xml
[2025-10-11 23:41:17] -rw-r--r--. 3 boincer umatlas 220543418 Oct 11 19:17 EVNT.46676267._002360.pool.root.1
[2025-10-11 23:41:17] -rw-r--r--. 3 boincer umatlas 220543418 Oct 11 19:17 ATLAS.root_0
[2025-10-11 23:41:17] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 19:17 start_atlas.sh
[2025-10-11 23:41:17] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 19:17 shared
[2025-10-11 23:41:17] -rw-r--r--. 2 boincer umatlas    569673 Oct 11 19:17 input.tar.gz
[2025-10-11 23:41:17] -rw-r--r--. 1 boincer umatlas         0 Oct 11 19:17 boinc_lockfile
[2025-10-11 23:41:17] -rw-r--r--. 1 boincer umatlas      2549 Oct 11 19:20 pandaJob.out
[2025-10-11 23:41:17] -rw-------. 1 boincer umatlas    975528 Oct 11 19:20 agis_schedconf.cvmfs.json
[2025-10-11 23:41:17] -rw-r--r--. 1 boincer umatlas      6946 Oct 11 23:37 init_data.xml
[2025-10-11 23:41:17] -rw-------. 1 boincer umatlas 193628853 Oct 11 23:37 HITS.46676269._058869.pool.root.1
[2025-10-11 23:41:17] -rw-r--r--. 1 boincer umatlas       530 Oct 11 23:37 boinc_task_state.xml
[2025-10-11 23:41:17] -rw-------. 1 boincer umatlas      1049 Oct 11 23:39 memory_monitor_summary.json
[2025-10-11 23:41:17] -rw-------. 1 boincer umatlas   1560580 Oct 11 23:39 agis_ddmendpoints.agis.ALL.json
[2025-10-11 23:41:17] -rw-------. 1 boincer umatlas    487048 Oct 11 23:39 log.46676269._058869.job.log.tgz.1
[2025-10-11 23:41:17] -rw-------. 1 boincer umatlas      7803 Oct 11 23:40 heartbeat.json
[2025-10-11 23:41:17] -rw-------. 1 boincer umatlas        95 Oct 11 23:40 pilot_heartbeat.json
[2025-10-11 23:41:17] -rw-r--r--. 1 boincer umatlas        28 Oct 11 23:41 wrapper_checkpoint.txt
[2025-10-11 23:41:17] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 23:41 boinc_mmap_file
[2025-10-11 23:41:17] -rw-------. 1 boincer umatlas      4825 Oct 11 23:41 pilotlog.txt
[2025-10-11 23:41:17] -rw-------. 1 boincer umatlas   2033336 Oct 11 23:41 log.46676269._058869.job.log.1
[2025-10-11 23:41:17] -rw-------. 1 boincer umatlas       357 Oct 11 23:41 output.list
[2025-10-11 23:41:17] -rw-r--r--. 1 boincer umatlas       620 Oct 11 23:41 runtime_log
[2025-10-11 23:41:17] -rw-------. 1 boincer umatlas   2539520 Oct 11 23:41 result.tar.gz
[2025-10-11 23:41:17] -rw-------. 1 boincer umatlas       784 Oct 11 23:41 WbXMDmzJpR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKbgNDmeqgVqm.diag
[2025-10-11 23:41:17] -rw-r--r--. 1 boincer umatlas      8784 Oct 11 23:41 runtime_log.err
[2025-10-11 23:41:17] -rw-r--r--. 1 boincer umatlas     23121 Oct 11 23:41 stderr.txt
[2025-10-11 23:41:17] HITS file was successfully produced:
[2025-10-11 23:41:17] -rw-------. 1 boincer umatlas 193628853 Oct 11 23:37 shared/HITS.pool.root.1
[2025-10-11 23:41:17]  *** Contents of shared directory: ***
[2025-10-11 23:41:17] total 407532
[2025-10-11 23:41:17] -rw-r--r--. 3 boincer umatlas 220543418 Oct 11 19:17 ATLAS.root_0
[2025-10-11 23:41:17] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 19:17 start_atlas.sh
[2025-10-11 23:41:17] -rw-r--r--. 2 boincer umatlas    569673 Oct 11 19:17 input.tar.gz
[2025-10-11 23:41:17] -rw-------. 1 boincer umatlas 193628853 Oct 11 23:37 HITS.pool.root.1
[2025-10-11 23:41:17] -rw-------. 1 boincer umatlas   2539520 Oct 11 23:41 result.tar.gz
23:41:19 (4018731): run_atlas exited; CPU time 36805.726564
23:41:19 (4018731): called boinc_finish(0)

</stderr_txt>
]]>

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