Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:43:23 (337478): wrapper (7.7.26015): starting
18:43:23 (337478): wrapper: running run_atlas (--nthreads 11)
[2025-10-11 18:43:23] Arguments: --nthreads 11
[2025-10-11 18:43:23] Threads: 11
[2025-10-11 18:43:23] Checking for CVMFS
[2025-10-11 18:43:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 18:43:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 18:43:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 18:43:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 18:43:25] 2.13.2.0 2754702 128420 384996 151599 2 393 26263412 32935937 86955 16776704 0 828792771 99.688 682841230 33325 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 18:43:25] CVMFS is ok
[2025-10-11 18:43:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 18:43:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 18:43:25] Further information can be found at the LHC@home message board.
[2025-10-11 18:43:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 18:43:25] Checking for apptainer binary...
[2025-10-11 18:43:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 18:43:25] Running /usr/bin/apptainer --version
[2025-10-11 18:43:25] apptainer version 1.4.3-1.el9
[2025-10-11 18:43:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 18:43:26] c7-9-14.aglt2.org
[2025-10-11 18:43:26] apptainer works
[2025-10-11 18:43:26] Set ATHENA_PROC_NUMBER=11
[2025-10-11 18:43:26] Set ATHENA_CORE_NUMBER=11
[2025-10-11 18:43:26] Starting ATLAS job with PandaID=6838454847
[2025-10-11 18:43:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 20:24:01]  *** The last 200 lines of the pilot log: ***
[2025-10-11 20:24:01] 2025-10-12 00:23:00,416 | INFO     | monitor loop #354: job 0:6838454847 is in state 'finished'
[2025-10-11 20:24:01] 2025-10-12 00:23:00,417 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 20:24:01] 2025-10-12 00:23:00,573 | INFO     | time since job start (5909s) is within the limit (172800.0s)
[2025-10-11 20:24:01] 2025-10-12 00:23:02,579 | INFO     | time since job start (5911s) is within the limit (172800.0s)
[2025-10-11 20:24:01] 2025-10-12 00:23:02,923 | INFO     | monitor loop #355: job 0:6838454847 is in state 'finished'
[2025-10-11 20:24:01] 2025-10-12 00:23:02,924 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 20:24:01] 2025-10-12 00:23:04,592 | INFO     | time since job start (5913s) is within the limit (172800.0s)
[2025-10-11 20:24:01] 2025-10-12 00:23:05,433 | INFO     | monitor loop #356: job 0:6838454847 is in state 'finished'
[2025-10-11 20:24:01] 2025-10-12 00:23:05,434 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 20:24:01] 2025-10-12 00:23:06,621 | INFO     | time since job start (5915s) is within the limit (172800.0s)
[2025-10-11 20:24:01] 2025-10-12 00:23:07,976 | INFO     | monitor loop #357: job 0:6838454847 is in state 'finished'
[2025-10-11 20:24:01] 2025-10-12 00:23:07,977 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 20:24:01] 2025-10-12 00:23:08,627 | INFO     | time since job start (5917s) is within the limit (172800.0s)
[2025-10-11 20:24:01] 2025-10-12 00:23:10,486 | INFO     | monitor loop #358: job 0:6838454847 is in state 'finished'
[2025-10-11 20:24:01] 2025-10-12 00:23:10,487 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 20:24:01] 2025-10-12 00:23:10,636 | INFO     | time since job start (5919s) is within the limit (172800.0s)
[2025-10-11 20:24:01] 2025-10-12 00:23:12,669 | INFO     | time since job start (5921s) is within the limit (172800.0s)
[2025-10-11 20:24:01] 2025-10-12 00:23:12,994 | INFO     | monitor loop #359: job 0:6838454847 is in state 'finished'
[2025-10-11 20:24:01] 2025-10-12 00:23:12,995 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 20:24:01] 2025-10-12 00:23:14,676 | INFO     | time since job start (5923s) is within the limit (172800.0s)
[2025-10-11 20:24:01] 2025-10-12 00:23:15,499 | INFO     | monitor loop #360: job 0:6838454847 is in state 'finished'
[2025-10-11 20:24:01] 2025-10-12 00:23:15,500 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 20:24:01] 2025-10-12 00:23:16,693 | INFO     | time since job start (5925s) is within the limit (172800.0s)
[2025-10-11 20:24:01] 2025-10-12 00:23:18,009 | INFO     | monitor loop #361: job 0:6838454847 is in state 'finished'
[2025-10-11 20:24:01] 2025-10-12 00:23:18,010 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 20:24:01] 2025-10-12 00:23:18,707 | INFO     | time since job start (5927s) is within the limit (172800.0s)
[2025-10-11 20:24:01] 2025-10-12 00:23:20,517 | INFO     | monitor loop #362: job 0:6838454847 is in state 'finished'
[2025-10-11 20:24:01] 2025-10-12 00:23:20,518 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 20:24:01] 2025-10-12 00:23:20,713 | INFO     | time since job start (5929s) is within the limit (172800.0s)
[2025-10-11 20:24:01] 2025-10-12 00:23:23,039 | INFO     | monitor loop #363: job 0:6838454847 is in state 'finished'
[2025-10-11 20:24:01] 2025-10-12 00:23:23,039 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 20:24:01] 2025-10-12 00:23:23,340 | INFO     | PID=347564 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 20:24:01] 2025-10-12 00:23:23,340 | INFO     | .. there are 118 such processes running
[2025-10-11 20:24:01] 2025-10-12 00:23:24,344 | INFO     | time since job start (5933s) is within the limit (172800.0s)
[2025-10-11 20:24:01] 2025-10-12 00:23:25,545 | INFO     | monitor loop #364: job 0:6838454847 is in state 'finished'
[2025-10-11 20:24:01] 2025-10-12 00:23:25,546 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 20:24:01] 2025-10-12 00:23:25,713 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-11 20:24:01] 2025-10-12 00:23:25,723 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9759843750076
[2025-10-11 20:24:01] 2025-10-12 00:23:25,763 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6838454847/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 20:24:01] 2025-10-12 00:23:25,763 | INFO     | extracted standard info from prmon json
[2025-10-11 20:24:01] 2025-10-12 00:23:25,763 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 20:24:01] 2025-10-12 00:23:25,763 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 20:24:01] 2025-10-12 00:23:25,764 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 20:24:01] 2025-10-12 00:23:25,764 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 20:24:01] 2025-10-12 00:23:25,765 | INFO     | fitting pss+swap vs Time
[2025-10-11 20:24:01] 2025-10-12 00:23:25,765 | INFO     | sum of square deviations: 211295645.89772764
[2025-10-11 20:24:01] 2025-10-12 00:23:25,765 | INFO     | sum of deviations: -1281577518.5909095
[2025-10-11 20:24:01] 2025-10-12 00:23:25,766 | INFO     | mean x: 1760225761.534091
[2025-10-11 20:24:01] 2025-10-12 00:23:25,766 | INFO     | mean y: 2269814.8636363638
[2025-10-11 20:24:01] 2025-10-12 00:23:25,766 | INFO     | -- intersect: 10678617422.700996
[2025-10-11 20:24:01] 2025-10-12 00:23:25,766 | INFO     | intersect: 10678617422.700996
[2025-10-11 20:24:01] 2025-10-12 00:23:25,766 | INFO     | chi2: 0.03673075762259352
[2025-10-11 20:24:01] 2025-10-12 00:23:25,766 | INFO     | -- intersect: 10678617422.700996
[2025-10-11 20:24:01] 2025-10-12 00:23:25,766 | INFO     | current memory leak: -6.07 B/s (using 88 data points, chi2=0.04)
[2025-10-11 20:24:01] 2025-10-12 00:23:25,766 | INFO     | could have reported an average CPU frequency of 3799 MHz (7 samples)
[2025-10-11 20:24:01] 2025-10-12 00:23:25,766 | INFO     | ..............................
[2025-10-11 20:24:01] 2025-10-12 00:23:25,766 | INFO     | . Timing measurements:
[2025-10-11 20:24:01] 2025-10-12 00:23:25,766 | INFO     | . get job = 0 s
[2025-10-11 20:24:01] 2025-10-12 00:23:25,766 | INFO     | . initial setup = 7 s
[2025-10-11 20:24:01] 2025-10-12 00:23:25,767 | INFO     | . payload setup = 40 s
[2025-10-11 20:24:01] 2025-10-12 00:23:25,767 | INFO     | . stage-in = 0 s
[2025-10-11 20:24:01] 2025-10-12 00:23:25,767 | INFO     | . payload execution = 5772 s
[2025-10-11 20:24:01] 2025-10-12 00:23:25,767 | INFO     | . stage-out = 2 s
[2025-10-11 20:24:01] 2025-10-12 00:23:25,767 | INFO     | . log creation = 1 s
[2025-10-11 20:24:01] 2025-10-12 00:23:25,767 | INFO     | ..............................
[2025-10-11 20:24:01] 2025-10-12 00:23:26,205 | INFO     | 
[2025-10-11 20:24:01] 2025-10-12 00:23:26,206 | INFO     | job summary report
[2025-10-11 20:24:01] 2025-10-12 00:23:26,206 | INFO     | --------------------------------------------------
[2025-10-11 20:24:01] 2025-10-12 00:23:26,206 | INFO     | PanDA job id: 6838454847
[2025-10-11 20:24:01] 2025-10-12 00:23:26,206 | INFO     | task id: 46676269
[2025-10-11 20:24:01] 2025-10-12 00:23:26,206 | INFO     | errors: (none)
[2025-10-11 20:24:01] 2025-10-12 00:23:26,206 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 20:24:01] 2025-10-12 00:23:26,206 | INFO     | pilot state: finished 
[2025-10-11 20:24:01] 2025-10-12 00:23:26,206 | INFO     | transexitcode: 0
[2025-10-11 20:24:01] 2025-10-12 00:23:26,206 | INFO     | exeerrorcode: 0
[2025-10-11 20:24:01] 2025-10-12 00:23:26,206 | INFO     | exeerrordiag: 
[2025-10-11 20:24:01] 2025-10-12 00:23:26,206 | INFO     | exitcode: 0
[2025-10-11 20:24:01] 2025-10-12 00:23:26,206 | INFO     | exitmsg: OK
[2025-10-11 20:24:01] 2025-10-12 00:23:26,206 | INFO     | cpuconsumptiontime: 22227 s
[2025-10-11 20:24:01] 2025-10-12 00:23:26,206 | INFO     | nevents: 400
[2025-10-11 20:24:01] 2025-10-12 00:23:26,206 | INFO     | neventsw: 0
[2025-10-11 20:24:01] 2025-10-12 00:23:26,206 | INFO     | pid: 368490
[2025-10-11 20:24:01] 2025-10-12 00:23:26,206 | INFO     | pgrp: 368490
[2025-10-11 20:24:01] 2025-10-12 00:23:26,206 | INFO     | corecount: 11
[2025-10-11 20:24:01] 2025-10-12 00:23:26,206 | INFO     | event service: False
[2025-10-11 20:24:01] 2025-10-12 00:23:26,206 | INFO     | sizes: {0: 2348857, 11: 2348857, 21: 2348885, 27: 2349175, 32: 2349203, 5817: 2375950, 5820: 2384948, 5823: 2385004, 5873: 2385198}
[2025-10-11 20:24:01] 2025-10-12 00:23:26,206 | INFO     | --------------------------------------------------
[2025-10-11 20:24:01] 2025-10-12 00:23:26,206 | INFO     | 
[2025-10-11 20:24:01] 2025-10-12 00:23:26,207 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-11 20:24:01] 2025-10-12 00:23:26,276 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 20:24:01] 2025-10-12 00:23:26,276 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 20:24:01] 2025-10-12 00:23:26,276 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 20:24:01] 2025-10-12 00:23:26,276 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 20:24:01] 2025-10-12 00:23:26,276 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 20:24:01] 2025-10-12 00:23:26,277 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 20:24:01] 2025-10-12 00:23:26,277 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 20:24:01] 2025-10-12 00:23:26,277 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 20:24:01] 2025-10-12 00:23:26,277 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 20:24:01] 2025-10-12 00:23:26,277 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 20:24:01] 2025-10-12 00:23:26,277 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 20:24:01] 2025-10-12 00:23:26,277 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 20:24:01] 2025-10-12 00:23:26,277 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 20:24:01] 2025-10-12 00:23:26,277 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 20:24:01] 2025-10-12 00:23:26,277 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 20:24:01] 2025-10-12 00:23:26,277 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 20:24:01] 2025-10-12 00:23:26,277 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 20:24:01] 2025-10-12 00:23:26,277 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 20:24:01] 2025-10-12 00:23:26,277 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 20:24:01] 2025-10-12 00:23:26,277 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 20:24:01] 2025-10-12 00:23:26,277 | INFO     | job 6838454847 has completed (purged errors)
[2025-10-11 20:24:01] 2025-10-12 00:23:26,277 | INFO     | overall cleanup function is called
[2025-10-11 20:24:01] 2025-10-12 00:23:27,285 | INFO     | --- collectZombieJob: --- 10, [368490]
[2025-10-11 20:24:01] 2025-10-12 00:23:27,286 | INFO     | zombie collector waiting for pid 368490
[2025-10-11 20:24:01] 2025-10-12 00:23:27,286 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 20:24:01] 2025-10-12 00:23:27,286 | INFO     | collected zombie processes
[2025-10-11 20:24:01] 2025-10-12 00:23:27,286 | INFO     | will attempt to kill all subprocesses of pid=368490
[2025-10-11 20:24:01] 2025-10-12 00:23:28,432 | INFO     | process IDs to be killed: [368490] (in reverse order)
[2025-10-11 20:24:01] 2025-10-12 00:23:29,050 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 20:24:01] 2025-10-12 00:23:29,051 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 20:24:01] 2025-10-12 00:23:29,138 | INFO     | did not find any defunct processes belonging to 368490
[2025-10-11 20:24:01] 2025-10-12 00:23:29,199 | INFO     | did not find any defunct processes belonging to 368490
[2025-10-11 20:24:01] 2025-10-12 00:23:29,200 | INFO     | ready for new job
[2025-10-11 20:24:01] 2025-10-12 00:23:29,200 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 20:24:01] 2025-10-12 00:23:29,205 | INFO     | ***************************************
[2025-10-11 20:24:01] 2025-10-12 00:23:29,205 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 20:24:01] 2025-10-12 00:23:29,205 | INFO     | ***************************************
[2025-10-11 20:24:01] 2025-10-12 00:23:29,205 | INFO     | 
[2025-10-11 20:24:01] 2025-10-12 00:23:29,227 | INFO     | architecture information:
[2025-10-11 20:24:01] 2025-10-12 00:23:29,238 | INFO     | executing command: cat /etc/os-release
[2025-10-11 20:24:01] 2025-10-12 00:23:29,288 | INFO     | cat /etc/os-release:
[2025-10-11 20:24:01] NAME="CentOS Linux"
[2025-10-11 20:24:01] VERSION="7 (Core)"
[2025-10-11 20:24:01] ID="centos"
[2025-10-11 20:24:01] ID_LIKE="rhel fedora"
[2025-10-11 20:24:01] VERSION_ID="7"
[2025-10-11 20:24:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 20:24:01] ANSI_COLOR="0;31"
[2025-10-11 20:24:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 20:24:01] HOME_URL="https://www.centos.org/"
[2025-10-11 20:24:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 20:24:01] 
[2025-10-11 20:24:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 20:24:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 20:24:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 20:24:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 20:24:01] 
[2025-10-11 20:24:01] 2025-10-12 00:23:29,288 | INFO     | ***************************************
[2025-10-11 20:24:01] 2025-10-12 00:23:29,793 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-11 20:24:01] 2025-10-12 00:23:29,864 | INFO     | sufficient remaining disk space (72271003648 B)
[2025-10-11 20:24:01] 2025-10-12 00:23:29,864 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 20:24:01] 2025-10-12 00:23:29,864 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 20:24:01] 2025-10-12 00:23:29,864 | INFO     | update_server=False
[2025-10-11 20:24:01] 2025-10-12 00:23:29,864 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 20:24:01] 2025-10-12 00:23:29,864 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 20:24:01] 2025-10-12 00:23:29,864 | INFO     | aborting loop
[2025-10-11 20:24:01] 2025-10-12 00:23:29,936 | INFO     | all data control threads have been joined
[2025-10-11 20:24:01] 2025-10-12 00:23:30,364 | INFO     | all job control threads have been joined
[2025-10-11 20:24:01] 2025-10-12 00:23:30,877 | INFO     | [job] retrieve thread has finished
[2025-10-11 20:24:01] 2025-10-12 00:23:30,877 | INFO     | [job] job monitor thread has finished
[2025-10-11 20:24:01] 2025-10-12 00:23:30,904 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 20:24:01] 2025-10-12 00:23:30,922 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 20:24:01] 2025-10-12 00:23:30,949 | INFO     | [data] control thread has finished
[2025-10-11 20:24:01] 2025-10-12 00:23:31,017 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 20:24:01] 2025-10-12 00:23:31,120 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 20:24:01] 2025-10-12 00:23:31,164 | INFO     | all payload control threads have been joined
[2025-10-11 20:24:01] 2025-10-12 00:23:31,228 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 20:24:01] 2025-10-12 00:23:31,382 | INFO     | [job] control thread has finished
[2025-10-11 20:24:01] 2025-10-12 00:23:31,818 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 20:24:01] 2025-10-12 00:23:31,843 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 20:24:01] 2025-10-12 00:23:31,941 | INFO     | [job] queue monitor thread has finished
[2025-10-11 20:24:01] 2025-10-12 00:23:31,972 | INFO     | [payload] failed_post thread has finished
[2025-10-11 20:24:01] 2025-10-12 00:23:32,092 | INFO     | [data] copytool_in thread has finished
[2025-10-11 20:24:01] 2025-10-12 00:23:32,136 | INFO     | [payload] validate_post thread has finished
[2025-10-11 20:24:01] 2025-10-12 00:23:32,170 | INFO     | [payload] control thread has finished
[2025-10-11 20:24:01] 2025-10-12 00:23:32,328 | INFO     | [job] validate thread has finished
[2025-10-11 20:24:01] 2025-10-12 00:23:33,127 | INFO     | [data] copytool_out thread has finished
[2025-10-11 20:24:01] 2025-10-12 00:23:35,832 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 20:24:01] 2025-10-12 00:23:41,305 | INFO     | [monitor] cgroup control has ended
[2025-10-11 20:24:01] 2025-10-12 00:23:42,029 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140182140098368)>', '<ExcThread(monitor, started 140181776602880)>']
[2025-10-11 20:24:01] 2025-10-12 00:23:47,053 | INFO     | all workflow threads have been joined
[2025-10-11 20:24:01] 2025-10-12 00:23:47,054 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 20:24:01] 2025-10-12 00:23:47,054 | INFO     | traces error code: 0
[2025-10-11 20:24:01] 2025-10-12 00:23:47,054 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 20:24:01] 2025-10-12 00:23:58,954 | INFO     | PID=347564 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 20:24:01] 2025-10-12 00:23:58,954 | INFO     | .. there are 118 such processes running
[2025-10-11 20:24:01] 2025-10-12 00:23:58,955 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 20:24:01] 2025-10-12 00:23:58,955 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 20:24:01] 2025-10-12 00:23:58,955 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 20:24:01] 2025-10-12 00:23:58,955 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 20:24:01] 2025-10-12 00:23:58,955 | INFO     | [monitor] control thread has ended
[2025-10-11 20:24:01] 2025-10-12 00:23:59,604 [wrapper] ==== pilot stdout END ====
[2025-10-11 20:24:01] 2025-10-12 00:23:59,661 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 20:24:01] 2025-10-12 00:23:59,696 [wrapper] pilotpid: 347564
[2025-10-11 20:24:01] 2025-10-12 00:23:59,785 [wrapper] Pilot exit status: 0
[2025-10-11 20:24:01] 2025-10-12 00:23:59,965 [wrapper] pandaids: 6838454847
[2025-10-11 20:24:01] 2025-10-12 00:24:00,791 [wrapper] cleanup supervisor_pilot 1184258 347565
[2025-10-11 20:24:01] 2025-10-12 00:24:00,830 [wrapper] Test setup, not cleaning
[2025-10-11 20:24:01] 2025-10-12 00:24:00,874 [wrapper] apfmon messages muted
[2025-10-11 20:24:01] 2025-10-12 00:24:00,906 [wrapper] ==== wrapper stdout END ====
[2025-10-11 20:24:01] 2025-10-12 00:24:00,983 [wrapper] ==== wrapper stderr END ====
[2025-10-11 20:24:01]  *** Error codes and diagnostics ***
[2025-10-11 20:24:01]     "exeErrorCode": 0,
[2025-10-11 20:24:01]     "exeErrorDiag": "",
[2025-10-11 20:24:01]     "pilotErrorCode": 0,
[2025-10-11 20:24:01]     "pilotErrorDiag": "",
[2025-10-11 20:24:01]  *** Listing of results directory ***
[2025-10-11 20:24:01] total 408480
[2025-10-11 20:24:01] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 10:01 pilot3.tar.gz
[2025-10-11 20:24:01] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 10:50 queuedata.json
[2025-10-11 20:24:01] -rwx------. 1 boincer umatlas     36292 Oct 11 10:50 runpilot2-wrapper.sh
[2025-10-11 20:24:01] -rw-r--r--. 1 boincer umatlas       100 Oct 11 18:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 20:24:01] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 18:43 run_atlas
[2025-10-11 20:24:01] -rw-r--r--. 1 boincer umatlas       105 Oct 11 18:43 job.xml
[2025-10-11 20:24:01] -rw-r--r--. 2 boincer umatlas 219581804 Oct 11 18:43 EVNT.46676267._002403.pool.root.1
[2025-10-11 20:24:01] -rw-r--r--. 2 boincer umatlas    569677 Oct 11 18:43 input.tar.gz
[2025-10-11 20:24:01] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 18:43 start_atlas.sh
[2025-10-11 20:24:01] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 18:43 shared
[2025-10-11 20:24:01] -rw-r--r--. 1 boincer umatlas         0 Oct 11 18:43 boinc_lockfile
[2025-10-11 20:24:01] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 18:43 pandaJob.out
[2025-10-11 20:24:01] -rw-------. 1 boincer umatlas    975520 Oct 11 18:44 agis_schedconf.cvmfs.json
[2025-10-11 20:24:01] -rw-------. 1 boincer umatlas   1560580 Oct 11 18:44 agis_ddmendpoints.agis.ALL.json
[2025-10-11 20:24:01] drwx------. 5 boincer umatlas      4096 Oct 11 18:44 pilot3
[2025-10-11 20:24:01] -rw-r--r--. 1 boincer umatlas      7159 Oct 11 20:18 init_data.xml
[2025-10-11 20:24:01] -rw-------. 1 boincer umatlas 192549913 Oct 11 20:21 HITS.46676269._059533.pool.root.1
[2025-10-11 20:24:01] -rw-r--r--. 1 boincer umatlas       530 Oct 11 20:21 boinc_task_state.xml
[2025-10-11 20:24:01] -rw-------. 1 boincer umatlas      1038 Oct 11 20:22 memory_monitor_summary.json
[2025-10-11 20:24:01] -rw-------. 1 boincer umatlas    382176 Oct 11 20:22 log.46676269._059533.job.log.tgz.1
[2025-10-11 20:24:01] -rw-------. 1 boincer umatlas      7783 Oct 11 20:23 heartbeat.json
[2025-10-11 20:24:01] -rw-------. 1 boincer umatlas       823 Oct 11 20:23 pilotlog.txt
[2025-10-11 20:24:01] -rw-------. 1 boincer umatlas        95 Oct 11 20:23 pilot_heartbeat.json
[2025-10-11 20:24:01] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 20:23 boinc_mmap_file
[2025-10-11 20:24:01] -rw-r--r--. 1 boincer umatlas        27 Oct 11 20:23 wrapper_checkpoint.txt
[2025-10-11 20:24:01] -rw-------. 1 boincer umatlas    741261 Oct 11 20:24 log.46676269._059533.job.log.1
[2025-10-11 20:24:01] -rw-------. 1 boincer umatlas       357 Oct 11 20:24 output.list
[2025-10-11 20:24:01] -rw-r--r--. 1 boincer umatlas       620 Oct 11 20:24 runtime_log
[2025-10-11 20:24:01] -rw-------. 1 boincer umatlas   1146880 Oct 11 20:24 result.tar.gz
[2025-10-11 20:24:01] -rw-r--r--. 1 boincer umatlas      8700 Oct 11 20:24 runtime_log.err
[2025-10-11 20:24:01] -rw-------. 1 boincer umatlas       651 Oct 11 20:24 OsFNDmx6pR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmU5RMDmqwrW0n.diag
[2025-10-11 20:24:01] -rw-r--r--. 1 boincer umatlas     22352 Oct 11 20:24 stderr.txt
[2025-10-11 20:24:01] HITS file was successfully produced:
[2025-10-11 20:24:01] -rw-------. 1 boincer umatlas 192549913 Oct 11 20:21 shared/HITS.pool.root.1
[2025-10-11 20:24:01]  *** Contents of shared directory: ***
[2025-10-11 20:24:01] total 404180
[2025-10-11 20:24:01] -rw-r--r--. 2 boincer umatlas 219581804 Oct 11 18:43 ATLAS.root_0
[2025-10-11 20:24:01] -rw-r--r--. 2 boincer umatlas    569677 Oct 11 18:43 input.tar.gz
[2025-10-11 20:24:01] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 18:43 start_atlas.sh
[2025-10-11 20:24:01] -rw-------. 1 boincer umatlas 192549913 Oct 11 20:21 HITS.pool.root.1
[2025-10-11 20:24:01] -rw-------. 1 boincer umatlas   1146880 Oct 11 20:24 result.tar.gz
20:24:03 (337478): run_atlas exited; CPU time 22430.825153
20:24:03 (337478): called boinc_finish(0)

</stderr_txt>
]]>

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