Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:21:30 (3623644): wrapper (7.7.26015): starting
14:21:30 (3623644): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 14:21:30] Arguments: --nthreads 4
[2025-10-12 14:21:30] Threads: 4
[2025-10-12 14:21:30] Checking for CVMFS
[2025-10-12 14:21:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:21:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:21:31] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:21:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:21:31] 2.13.2.0 1261730 1917 50996 151604 1 188 3689751 6144000 2667 130560 0 5234253 99.997 60251 95 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.253:3128 1
[2025-10-12 14:21:31] CVMFS is ok
[2025-10-12 14:21:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:21:32] Checking for apptainer binary...
[2025-10-12 14:21:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 14:21:32] Running /usr/bin/apptainer --version
[2025-10-12 14:21:32] apptainer version 1.4.0
[2025-10-12 14:21:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:21:32] Zen
[2025-10-12 14:21:32] apptainer works
[2025-10-12 14:21:32] Set ATHENA_PROC_NUMBER=4
[2025-10-12 14:21:32] Set ATHENA_CORE_NUMBER=4
[2025-10-12 14:21:32] Starting ATLAS job with PandaID=6838634421
[2025-10-12 14:21:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/michael/Boinc/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 16:01:56]  *** The last 200 lines of the pilot log: ***
[2025-10-12 16:01:56]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 16:01:56]  replicas=None
[2025-10-12 16:01:56]  scope=mc23_13p6TeV
[2025-10-12 16:01:56]  status=None
[2025-10-12 16:01:56]  status_code=0
[2025-10-12 16:01:56]  storage_token=
[2025-10-12 16:01:56]  surl=/home/michael/Boinc/BOINC/slots/0/PanDA_Pilot-6838634421/log.46676269._061771.job.log.tgz.1
[2025-10-12 16:01:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3f/d9/log.46676269._061771.job.log.tgz.1
[2025-10-12 16:01:56]  workdir=None
[2025-10-12 16:01:56] ]
[2025-10-12 16:01:56] 2025-10-12 05:01:16,753 | INFO     | transferring file log.46676269._061771.job.log.tgz.1 from /home/michael/Boinc/BOINC/slots/0/PanDA_Pilot-6838634421/log.46676269._061771.job.log.tgz.1 to /home/mich
[2025-10-12 16:01:56] 2025-10-12 05:01:16,753 | INFO     | executing command: /usr/bin/env mv /home/michael/Boinc/BOINC/slots/0/PanDA_Pilot-6838634421/log.46676269._061771.job.log.tgz.1 /home/michael/Boinc/BOINC/slots/0/lo
[2025-10-12 16:01:56] 2025-10-12 05:01:16,768 | INFO     | adding to output.list: log.46676269._061771.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3f/d9/log.46676269._061771.job.log.tg
[2025-10-12 16:01:56] 2025-10-12 05:01:16,768 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 16:01:56] 2025-10-12 05:01:16,768 | INFO     | summary of transferred files:
[2025-10-12 16:01:56] 2025-10-12 05:01:16,768 | INFO     |  -- lfn=log.46676269._061771.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 16:01:56] 2025-10-12 05:01:16,769 | INFO     | stage-out finished correctly
[2025-10-12 16:01:56] 2025-10-12 05:01:17,979 | INFO     | monitor loop #451: job 0:6838634421 is in state 'finished'
[2025-10-12 16:01:56] 2025-10-12 05:01:17,979 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:01:56] 2025-10-12 05:01:18,620 | INFO     | time since job start (5976s) is within the limit (172800.0s)
[2025-10-12 16:01:56] 2025-10-12 05:01:19,448 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 16:01:56] 2025-10-12 05:01:20,059 | INFO     | job 6838634421 has state=finished
[2025-10-12 16:01:56] 2025-10-12 05:01:20,059 | INFO     | preparing for final server update for job 6838634421 in state='finished'
[2025-10-12 16:01:56] 2025-10-12 05:01:20,059 | INFO     | this job has now completed (state=finished)
[2025-10-12 16:01:56] 2025-10-12 05:01:20,059 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 16:01:56] 2025-10-12 05:01:20,059 | INFO     | log transfer has been attempted: DONE
[2025-10-12 16:01:56] 2025-10-12 05:01:20,059 | INFO     | job 6838634421 has finished - writing final server update
[2025-10-12 16:01:56] 2025-10-12 05:01:20,059 | INFO     | total number of processed events: 400 (read)
[2025-10-12 16:01:56] 2025-10-12 05:01:20,060 | INFO     | executing command: lscpu
[2025-10-12 16:01:56] 2025-10-12 05:01:20,084 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 16:01:56] 2025-10-12 05:01:20,482 | INFO     | monitor loop #452: job 0:6838634421 is in state 'finished'
[2025-10-12 16:01:56] 2025-10-12 05:01:20,482 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:01:56] 2025-10-12 05:01:20,625 | INFO     | time since job start (5978s) is within the limit (172800.0s)
[2025-10-12 16:01:56] 2025-10-12 05:01:21,775 | INFO     | PID=3627454 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 16:01:56] 2025-10-12 05:01:21,775 | INFO     | .. there are 4 such processes running
[2025-10-12 16:01:56] 2025-10-12 05:01:22,599 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 16:01:56] 2025-10-12 05:01:22,601 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 4123.469375
[2025-10-12 16:01:56] 2025-10-12 05:01:22,605 | INFO     | using path: /home/michael/Boinc/BOINC/slots/0/PanDA_Pilot-6838634421/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 16:01:56] 2025-10-12 05:01:22,605 | INFO     | extracted standard info from prmon json
[2025-10-12 16:01:56] 2025-10-12 05:01:22,605 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 16:01:56] 2025-10-12 05:01:22,605 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 16:01:56] 2025-10-12 05:01:22,605 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 16:01:56] 2025-10-12 05:01:22,605 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 16:01:56] 2025-10-12 05:01:22,607 | INFO     | fitting pss+swap vs Time
[2025-10-12 16:01:56] 2025-10-12 05:01:22,607 | INFO     | sum of square deviations: 233641590.0
[2025-10-12 16:01:56] 2025-10-12 05:01:22,607 | INFO     | sum of deviations: -4475421892.0
[2025-10-12 16:01:56] 2025-10-12 05:01:22,607 | INFO     | mean x: 1760242371.0
[2025-10-12 16:01:56] 2025-10-12 05:01:22,607 | INFO     | mean y: 2377449.923076923
[2025-10-12 16:01:56] 2025-10-12 05:01:22,607 | INFO     | -- intersect: 33719949918.075623
[2025-10-12 16:01:56] 2025-10-12 05:01:22,607 | INFO     | intersect: 33719949918.075623
[2025-10-12 16:01:56] 2025-10-12 05:01:22,608 | INFO     | chi2: 0.013434756454888482
[2025-10-12 16:01:56] 2025-10-12 05:01:22,608 | INFO     | -- intersect: 33719949918.075623
[2025-10-12 16:01:56] 2025-10-12 05:01:22,608 | INFO     | current memory leak: -19.16 B/s (using 91 data points, chi2=0.01)
[2025-10-12 16:01:56] 2025-10-12 05:01:22,608 | INFO     | could have reported an average CPU frequency of 4273 MHz (7 samples)
[2025-10-12 16:01:56] 2025-10-12 05:01:22,608 | INFO     | ..............................
[2025-10-12 16:01:56] 2025-10-12 05:01:22,608 | INFO     | . Timing measurements:
[2025-10-12 16:01:56] 2025-10-12 05:01:22,608 | INFO     | . get job = 0 s
[2025-10-12 16:01:56] 2025-10-12 05:01:22,608 | INFO     | . initial setup = 5 s
[2025-10-12 16:01:56] 2025-10-12 05:01:22,608 | INFO     | . payload setup = 3 s
[2025-10-12 16:01:56] 2025-10-12 05:01:22,608 | INFO     | . stage-in = 0 s
[2025-10-12 16:01:56] 2025-10-12 05:01:22,608 | INFO     | . payload execution = 5952 s
[2025-10-12 16:01:56] 2025-10-12 05:01:22,608 | INFO     | . stage-out = 0 s
[2025-10-12 16:01:56] 2025-10-12 05:01:22,608 | INFO     | . log creation = 0 s
[2025-10-12 16:01:56] 2025-10-12 05:01:22,609 | INFO     | ..............................
[2025-10-12 16:01:56] 2025-10-12 05:01:22,667 | INFO     | 
[2025-10-12 16:01:56] 2025-10-12 05:01:22,667 | INFO     | job summary report
[2025-10-12 16:01:56] 2025-10-12 05:01:22,667 | INFO     | --------------------------------------------------
[2025-10-12 16:01:56] 2025-10-12 05:01:22,667 | INFO     | PanDA job id: 6838634421
[2025-10-12 16:01:56] 2025-10-12 05:01:22,667 | INFO     | task id: 46676269
[2025-10-12 16:01:56] 2025-10-12 05:01:22,668 | INFO     | errors: (none)
[2025-10-12 16:01:56] 2025-10-12 05:01:22,668 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 16:01:56] 2025-10-12 05:01:22,668 | INFO     | pilot state: finished 
[2025-10-12 16:01:56] 2025-10-12 05:01:22,668 | INFO     | transexitcode: 0
[2025-10-12 16:01:56] 2025-10-12 05:01:22,668 | INFO     | exeerrorcode: 0
[2025-10-12 16:01:56] 2025-10-12 05:01:22,668 | INFO     | exeerrordiag: 
[2025-10-12 16:01:56] 2025-10-12 05:01:22,668 | INFO     | exitcode: 0
[2025-10-12 16:01:56] 2025-10-12 05:01:22,668 | INFO     | exitmsg: OK
[2025-10-12 16:01:56] 2025-10-12 05:01:22,668 | INFO     | cpuconsumptiontime: 22841 s
[2025-10-12 16:01:56] 2025-10-12 05:01:22,668 | INFO     | nevents: 400
[2025-10-12 16:01:56] 2025-10-12 05:01:22,668 | INFO     | neventsw: 0
[2025-10-12 16:01:56] 2025-10-12 05:01:22,668 | INFO     | pid: 3634035
[2025-10-12 16:01:56] 2025-10-12 05:01:22,668 | INFO     | pgrp: 3634035
[2025-10-12 16:01:56] 2025-10-12 05:01:22,668 | INFO     | corecount: 4
[2025-10-12 16:01:56] 2025-10-12 05:01:22,668 | INFO     | event service: False
[2025-10-12 16:01:56] 2025-10-12 05:01:22,668 | INFO     | sizes: {0: 2348029, 1: 2348896, 3: 2349158, 11: 2349186, 5959: 2376050, 5961: 2385070, 5964: 2385254, 5967: 2385448}
[2025-10-12 16:01:56] 2025-10-12 05:01:22,668 | INFO     | --------------------------------------------------
[2025-10-12 16:01:56] 2025-10-12 05:01:22,668 | INFO     | 
[2025-10-12 16:01:56] 2025-10-12 05:01:22,668 | INFO     | executing command: ls -lF /home/michael/Boinc/BOINC/slots/0
[2025-10-12 16:01:56] 2025-10-12 05:01:22,686 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 16:01:56] 2025-10-12 05:01:22,686 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 16:01:56] 2025-10-12 05:01:22,686 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 16:01:56] 2025-10-12 05:01:22,686 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 16:01:56] 2025-10-12 05:01:22,686 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 16:01:56] 2025-10-12 05:01:22,686 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 16:01:56] 2025-10-12 05:01:22,686 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 16:01:56] 2025-10-12 05:01:22,686 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 16:01:56] 2025-10-12 05:01:22,686 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 16:01:56] 2025-10-12 05:01:22,686 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 16:01:56] 2025-10-12 05:01:22,686 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 16:01:56] 2025-10-12 05:01:22,686 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 16:01:56] 2025-10-12 05:01:22,686 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 16:01:56] 2025-10-12 05:01:22,686 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 16:01:56] 2025-10-12 05:01:22,686 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 16:01:56] 2025-10-12 05:01:22,686 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 16:01:56] 2025-10-12 05:01:22,686 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 16:01:56] 2025-10-12 05:01:22,686 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 16:01:56] 2025-10-12 05:01:22,686 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 16:01:56] 2025-10-12 05:01:22,686 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 16:01:56] 2025-10-12 05:01:22,686 | INFO     | job 6838634421 has completed (purged errors)
[2025-10-12 16:01:56] 2025-10-12 05:01:22,687 | INFO     | overall cleanup function is called
[2025-10-12 16:01:56] 2025-10-12 05:01:23,694 | INFO     | --- collectZombieJob: --- 10, [3634035]
[2025-10-12 16:01:56] 2025-10-12 05:01:23,694 | INFO     | zombie collector waiting for pid 3634035
[2025-10-12 16:01:56] 2025-10-12 05:01:23,694 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 16:01:56] 2025-10-12 05:01:23,694 | INFO     | collected zombie processes
[2025-10-12 16:01:56] 2025-10-12 05:01:23,694 | INFO     | will attempt to kill all subprocesses of pid=3634035
[2025-10-12 16:01:56] 2025-10-12 05:01:23,814 | INFO     | process IDs to be killed: [3634035] (in reverse order)
[2025-10-12 16:01:56] 2025-10-12 05:01:23,862 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 16:01:56] 2025-10-12 05:01:23,862 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 16:01:56] 2025-10-12 05:01:23,864 | INFO     | did not find any defunct processes belonging to 3634035
[2025-10-12 16:01:56] 2025-10-12 05:01:23,866 | INFO     | did not find any defunct processes belonging to 3634035
[2025-10-12 16:01:56] 2025-10-12 05:01:23,866 | INFO     | ready for new job
[2025-10-12 16:01:56] 2025-10-12 05:01:23,867 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 16:01:56] 2025-10-12 05:01:23,867 | INFO     | ***************************************
[2025-10-12 16:01:56] 2025-10-12 05:01:23,867 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 16:01:56] 2025-10-12 05:01:23,868 | INFO     | ***************************************
[2025-10-12 16:01:56] 2025-10-12 05:01:23,868 | INFO     | 
[2025-10-12 16:01:56] 2025-10-12 05:01:23,868 | INFO     | architecture information:
[2025-10-12 16:01:56] 2025-10-12 05:01:23,868 | INFO     | executing command: cat /etc/os-release
[2025-10-12 16:01:56] 2025-10-12 05:01:23,878 | INFO     | cat /etc/os-release:
[2025-10-12 16:01:56] NAME="CentOS Linux"
[2025-10-12 16:01:56] VERSION="7 (Core)"
[2025-10-12 16:01:56] ID="centos"
[2025-10-12 16:01:56] ID_LIKE="rhel fedora"
[2025-10-12 16:01:56] VERSION_ID="7"
[2025-10-12 16:01:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 16:01:56] ANSI_COLOR="0;31"
[2025-10-12 16:01:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 16:01:56] HOME_URL="https://www.centos.org/"
[2025-10-12 16:01:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 16:01:56] 
[2025-10-12 16:01:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 16:01:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 16:01:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 16:01:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 16:01:56] 
[2025-10-12 16:01:56] 2025-10-12 05:01:23,878 | INFO     | ***************************************
[2025-10-12 16:01:56] 2025-10-12 05:01:24,381 | INFO     | executing command: df -mP /home/michael/Boinc/BOINC/slots/0
[2025-10-12 16:01:56] 2025-10-12 05:01:24,396 | INFO     | sufficient remaining disk space (207371632640 B)
[2025-10-12 16:01:56] 2025-10-12 05:01:24,396 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 16:01:56] 2025-10-12 05:01:24,396 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 16:01:56] 2025-10-12 05:01:24,396 | INFO     | update_server=False
[2025-10-12 16:01:56] 2025-10-12 05:01:24,396 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 16:01:56] 2025-10-12 05:01:24,396 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:01:56] 2025-10-12 05:01:24,397 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:01:56] 2025-10-12 05:01:24,397 | INFO     | aborting loop
[2025-10-12 16:01:56] 2025-10-12 05:01:24,527 | INFO     | all job control threads have been joined
[2025-10-12 16:01:56] 2025-10-12 05:01:24,836 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 16:01:56] 2025-10-12 05:01:25,028 | INFO     | all data control threads have been joined
[2025-10-12 16:01:56] 2025-10-12 05:01:25,402 | INFO     | [job] retrieve thread has finished
[2025-10-12 16:01:56] 2025-10-12 05:01:25,402 | INFO     | [job] job monitor thread has finished
[2025-10-12 16:01:56] 2025-10-12 05:01:25,402 | INFO     | [job] queue monitor thread has finished
[2025-10-12 16:01:56] 2025-10-12 05:01:25,438 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 16:01:56] 2025-10-12 05:01:25,513 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 16:01:56] 2025-10-12 05:01:25,532 | INFO     | [job] control thread has finished
[2025-10-12 16:01:56] 2025-10-12 05:01:25,532 | INFO     | all payload control threads have been joined
[2025-10-12 16:01:56] 2025-10-12 05:01:25,585 | INFO     | [payload] validate_post thread has finished
[2025-10-12 16:01:56] 2025-10-12 05:01:26,032 | INFO     | [data] control thread has finished
[2025-10-12 16:01:56] 2025-10-12 05:01:26,060 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 16:01:56] 2025-10-12 05:01:26,284 | INFO     | [data] copytool_in thread has finished
[2025-10-12 16:01:56] 2025-10-12 05:01:26,537 | INFO     | [payload] control thread has finished
[2025-10-12 16:01:56] 2025-10-12 05:01:26,586 | INFO     | [payload] failed_post thread has finished
[2025-10-12 16:01:56] 2025-10-12 05:01:26,681 | INFO     | [job] validate thread has finished
[2025-10-12 16:01:56] 2025-10-12 05:01:26,842 | INFO     | [data] copytool_out thread has finished
[2025-10-12 16:01:56] 2025-10-12 05:01:26,874 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 16:01:56] 2025-10-12 05:01:29,517 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 16:01:56] 2025-10-12 05:01:34,830 | INFO     | job.realtimelogging is not enabled
[2025-10-12 16:01:56] 2025-10-12 05:01:35,835 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 16:01:56] 2025-10-12 05:01:51,265 | INFO     | [monitor] cgroup control has ended
[2025-10-12 16:01:56] 2025-10-12 05:01:51,545 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139673339721536)>', '<ExcThread(monitor, started 139672822978304)>']
[2025-10-12 16:01:56] 2025-10-12 05:01:53,968 | INFO     | PID=3627454 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 16:01:56] 2025-10-12 05:01:53,969 | INFO     | .. there are 4 such processes running
[2025-10-12 16:01:56] 2025-10-12 05:01:53,969 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 16:01:56] 2025-10-12 05:01:53,969 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 16:01:56] 2025-10-12 05:01:53,969 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 16:01:56] 2025-10-12 05:01:53,969 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 16:01:56] 2025-10-12 05:01:53,969 | INFO     | [monitor] control thread has ended
[2025-10-12 16:01:56] 2025-10-12 05:01:56,570 | INFO     | all workflow threads have been joined
[2025-10-12 16:01:56] 2025-10-12 05:01:56,571 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 16:01:56] 2025-10-12 05:01:56,571 | INFO     | traces error code: 0
[2025-10-12 16:01:56] 2025-10-12 05:01:56,571 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 16:01:56] 2025-10-12 05:01:56,645 [wrapper] ==== pilot stdout END ====
[2025-10-12 16:01:56] 2025-10-12 05:01:56,647 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 16:01:56] 2025-10-12 05:01:56,650 [wrapper] pilotpid: 3627454
[2025-10-12 16:01:56] 2025-10-12 05:01:56,653 [wrapper] Pilot exit status: 0
[2025-10-12 16:01:56] 2025-10-12 05:01:56,660 [wrapper] pandaids: 6838634421
[2025-10-12 16:01:56] 2025-10-12 05:01:56,694 [wrapper] cleanup supervisor_pilot 3716385 3627455
[2025-10-12 16:01:56] 2025-10-12 05:01:56,695 [wrapper] Test setup, not cleaning
[2025-10-12 16:01:56] 2025-10-12 05:01:56,715 [wrapper] apfmon messages muted
[2025-10-12 16:01:56] 2025-10-12 05:01:56,716 [wrapper] ==== wrapper stdout END ====
[2025-10-12 16:01:56] 2025-10-12 05:01:56,718 [wrapper] ==== wrapper stderr END ====
[2025-10-12 16:01:56]  *** Error codes and diagnostics ***
[2025-10-12 16:01:56]     "exeErrorCode": 0,
[2025-10-12 16:01:56]     "exeErrorDiag": "",
[2025-10-12 16:01:56]     "pilotErrorCode": 0,
[2025-10-12 16:01:56]     "pilotErrorDiag": "",
[2025-10-12 16:01:56]  *** Listing of results directory ***
[2025-10-12 16:01:56] total 412128
[2025-10-12 16:01:56] -rw-r--r-- 1 michael michael      5112 Oct 12 04:18 queuedata.json
[2025-10-12 16:01:56] -rw-r--r-- 1 michael michael    557409 Oct 12 04:18 pilot3.tar.gz
[2025-10-12 16:01:56] -rwx------ 1 michael michael     36292 Oct 12 04:20 runpilot2-wrapper.sh
[2025-10-12 16:01:56] -rw-rw-r-- 1 michael michael       100 Oct 12 14:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 16:01:56] -rwxr-xr-x 1 michael michael      7986 Oct 12 14:21 run_atlas
[2025-10-12 16:01:56] -rw-rw-r-- 1 michael michael       105 Oct 12 14:21 job.xml
[2025-10-12 16:01:56] -rw-r--r-- 2 michael michael 222751817 Oct 12 14:21 EVNT.46676267._002481.pool.root.1
[2025-10-12 16:01:56] -rw-rw-r-- 1 michael michael      9816 Oct 12 14:21 init_data.xml
[2025-10-12 16:01:56] drwxrwx--x 2 michael michael      4096 Oct 12 14:21 shared
[2025-10-12 16:01:56] -rw-r--r-- 2 michael michael    569681 Oct 12 14:21 input.tar.gz
[2025-10-12 16:01:56] -rw-r--r-- 2 michael michael     15120 Oct 12 14:21 start_atlas.sh
[2025-10-12 16:01:56] -rw-rw-r-- 1 michael michael         0 Oct 12 14:21 boinc_lockfile
[2025-10-12 16:01:56] -rw-rw-r-- 1 michael michael      2550 Oct 12 14:21 pandaJob.out
[2025-10-12 16:01:56] -rw------- 1 michael michael    975496 Oct 12 14:21 agis_schedconf.cvmfs.json
[2025-10-12 16:01:56] -rw------- 1 michael michael   1560580 Oct 12 14:21 agis_ddmendpoints.agis.ALL.json
[2025-10-12 16:01:56] drwx------ 5 michael michael      4096 Oct 12 14:21 pilot3
[2025-10-12 16:01:56] -rw------- 1 michael michael 192976112 Oct 12 16:00 HITS.46676269._061771.pool.root.1
[2025-10-12 16:01:56] -rw------- 1 michael michael      1025 Oct 12 16:01 memory_monitor_summary.json
[2025-10-12 16:01:56] -rw------- 1 michael michael    301083 Oct 12 16:01 log.46676269._061771.job.log.tgz.1
[2025-10-12 16:01:56] -rw-rw-r-- 1 michael michael       530 Oct 12 16:01 boinc_task_state.xml
[2025-10-12 16:01:56] -rw------- 1 michael michael      7729 Oct 12 16:01 heartbeat.json
[2025-10-12 16:01:56] -rw-rw-r-- 1 michael michael      8192 Oct 12 16:01 boinc_mmap_file
[2025-10-12 16:01:56] -rw-rw-r-- 1 michael michael        27 Oct 12 16:01 wrapper_checkpoint.txt
[2025-10-12 16:01:56] -rw------- 1 michael michael        95 Oct 12 16:01 pilot_heartbeat.json
[2025-10-12 16:01:56] -rw------- 1 michael michael      4907 Oct 12 16:01 pilotlog.txt
[2025-10-12 16:01:56] -rw------- 1 michael michael    889627 Oct 12 16:01 log.46676269._061771.job.log.1
[2025-10-12 16:01:56] -rw------- 1 michael michael       357 Oct 12 16:01 output.list
[2025-10-12 16:01:56] -rw-rw-r-- 1 michael michael       620 Oct 12 16:01 runtime_log
[2025-10-12 16:01:56] -rw------- 1 michael michael   1208320 Oct 12 16:01 result.tar.gz
[2025-10-12 16:01:56] -rw-rw-r-- 1 michael michael      8797 Oct 12 16:01 runtime_log.err
[2025-10-12 16:01:56] -rw------- 1 michael michael       641 Oct 12 16:01 jbtKDm6RsR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmn3gNDmxrY4Zm.diag
[2025-10-12 16:01:56] -rw-rw-r-- 1 michael michael     21653 Oct 12 16:01 stderr.txt
[2025-10-12 16:01:56] HITS file was successfully produced:
[2025-10-12 16:01:56] -rw------- 1 michael michael 192976112 Oct 12 16:00 shared/HITS.pool.root.1
[2025-10-12 16:01:56]  *** Contents of shared directory: ***
[2025-10-12 16:01:56] total 407752
[2025-10-12 16:01:56] -rw-r--r-- 2 michael michael 222751817 Oct 12 14:21 ATLAS.root_0
[2025-10-12 16:01:56] -rw-r--r-- 2 michael michael    569681 Oct 12 14:21 input.tar.gz
[2025-10-12 16:01:56] -rw-r--r-- 2 michael michael     15120 Oct 12 14:21 start_atlas.sh
[2025-10-12 16:01:56] -rw------- 1 michael michael 192976112 Oct 12 16:00 HITS.pool.root.1
[2025-10-12 16:01:56] -rw------- 1 michael michael   1208320 Oct 12 16:01 result.tar.gz
16:01:58 (3623644): run_atlas exited; CPU time 22899.272791
16:01:58 (3623644): called boinc_finish(0)

</stderr_txt>
]]>

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