Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-11 20:51:44 (43516): vboxwrapper version 26210
2025-10-11 20:51:44 (43516): BOINC client version: 8.2.4
2025-10-11 20:51:45 (43516): Detected: VirtualBox VboxManage Interface (Version: 6.1.26)
2025-10-11 20:51:45 (43516): Successfully copied 'init_data.xml' to the shared directory.
2025-10-11 20:51:45 (43516): Create VM. (boinc_c55cd813406695e6, slot#2)
2025-10-11 20:51:46 (43516): Setting Memory Size for VM. (4800MB)
2025-10-11 20:51:46 (43516): Setting CPU Count for VM. (8)
2025-10-11 20:51:46 (43516): Setting Chipset Options for VM.
2025-10-11 20:51:47 (43516): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-11 20:51:47 (43516): Setting Boot Options for VM.
2025-10-11 20:51:47 (43516): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-11 20:51:48 (43516): Enabling VM Network Access.
2025-10-11 20:51:48 (43516): Disabling USB Support for VM.
2025-10-11 20:51:48 (43516): Disabling COM Port Support for VM.
2025-10-11 20:51:48 (43516): Disabling LPT Port Support for VM.
2025-10-11 20:51:49 (43516): Disabling Audio Support for VM.
2025-10-11 20:51:49 (43516): Disabling Clipboard Support for VM.
2025-10-11 20:51:49 (43516): Disabling Drag and Drop Support for VM.
2025-10-11 20:51:49 (43516): Adding storage controller(s) to VM.
2025-10-11 20:51:50 (43516): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-11 20:51:50 (43516): Adding VirtualBox Guest Additions to VM.
2025-10-11 20:51:50 (43516): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-11 20:51:51 (43516): forwarding host port 57703 to guest port 80
2025-10-11 20:51:51 (43516): Enabling remote desktop for VM.
2025-10-11 20:51:52 (43516): Enabling shared directory for VM.
2025-10-11 20:51:52 (43516): Starting VM using VBoxManage interface. (boinc_c55cd813406695e6, slot#2)
2025-10-11 20:51:58 (43516): Successfully started VM. (PID = '24288')
2025-10-11 20:51:58 (43516): Reporting VM Process ID to BOINC.
2025-10-11 20:51:58 (43516): Guest Log: BIOS: VirtualBox 6.1.26
2025-10-11 20:51:58 (43516): Guest Log: CPUID EDX: 0x178bfbff
2025-10-11 20:51:58 (43516): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-11 20:51:58 (43516): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-11 20:51:58 (43516): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-11 20:51:58 (43516): Detected: Web Application Enabled (http://localhost:57703)
2025-10-11 20:51:58 (43516): Detected: Remote Desktop Enabled (localhost:57709)
2025-10-11 20:51:58 (43516): Preference change detected
2025-10-11 20:51:58 (43516): Setting CPU throttle for VM. (90%)
2025-10-11 20:51:59 (43516): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 20:52:00 (43516): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-11 20:52:00 (43516): Guest Log: BIOS: Booting from Hard Disk...
2025-10-11 20:52:03 (43516): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-11 20:52:03 (43516): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-11 20:52:03 (43516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-11 20:52:13 (43516): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-11 20:52:13 (43516): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-11 20:52:29 (43516): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-11 20:52:29 (43516): Guest Log: 00:00:00.000263 main     Log opened 2025-10-11T20:52:27.191964000Z
2025-10-11 20:52:29 (43516): Guest Log: 00:00:00.000395 main     OS Product: Linux
2025-10-11 20:52:29 (43516): Guest Log: 00:00:00.000431 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-11 20:52:29 (43516): Guest Log: 00:00:00.000459 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-11 20:52:29 (43516): Guest Log: 00:00:00.000486 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-11 20:52:29 (43516): Guest Log: 00:00:00.000487 main     Process ID: 1368
2025-10-11 20:52:29 (43516): Guest Log: 00:00:00.000487 main     Package type: LINUX_64BITS_GENERIC
2025-10-11 20:52:29 (43516): Guest Log: 00:00:00.001205 main     5.2.32 r132073 started. Verbose level = 0
2025-10-11 20:52:29 (43516): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-11 20:52:29 (43516): Guest Log: [INFO] Mounting shared directory
2025-10-11 20:52:29 (43516): Guest Log: [INFO] Checking for init_data.xml
2025-10-11 20:52:35 (43516): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-11 20:52:35 (43516): Guest Log: [INFO] Detected branch: prod
2025-10-11 20:52:35 (43516): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-11 20:52:35 (43516): Guest Log: Copying input files
2025-10-11 20:52:37 (43516): Guest Log: Copied input files into RunAtlas.
2025-10-11 20:52:37 (43516): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-11 20:52:37 (43516): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-11 20:52:37 (43516): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-11 20:52:37 (43516): Guest Log: Further information can be found at the LHC@home message board.
2025-10-11 20:52:39 (43516): Guest Log: 00:00:10.015357 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 940 441 000ns (GuestNow=1 760 233 959 135 207 000 ns GuestLast=1 760 215 947 194 766 000 ns fSetTimeLastLoop=true )
2025-10-11 20:53:05 (43516): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 20:53:26 (43516): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 20:53:34 (43516): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-11 20:53:34 (43516): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-11 20:53:34 (43516): Guest Log: 2.6.3.0 1651 0 32188 151602 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-11 20:53:38 (43516): Guest Log: copied the webapp to /var/www
2025-10-11 20:53:38 (43516): Guest Log: ATHENA_PROC_NUMBER=8
2025-10-11 20:53:38 (43516): Guest Log: ATHENA_CORE_NUMBER=8
2025-10-11 20:53:38 (43516): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-11 20:53:38 (43516): Guest Log:  *** Starting ATLAS job. (PandaID=6838634803 taskID=46676269) ***
2025-10-11 20:55:47 (43516): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 20:56:07 (43516): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 20:57:07 (43516): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 20:57:27 (43516): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 21:08:01 (43516): Preference change detected
2025-10-11 21:08:01 (43516): Setting CPU throttle for VM. (90%)
2025-10-11 21:08:01 (43516): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 21:10:29 (43516): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 21:10:49 (43516): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 21:10:59 (43516): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 21:11:20 (43516): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 21:22:22 (43516): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 21:22:42 (43516): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 21:42:26 (43516): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 21:42:46 (43516): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 22:01:21 (43516): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 22:01:40 (43516): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 22:11:13 (43516): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 22:11:33 (43516): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 22:23:21 (43516): Guest Log:  *** Job finished ***
2025-10-11 22:23:21 (43516): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-11 22:23:21 (43516): Guest Log: 2025-10-12 03:19:53,636 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-11 22:23:21 (43516): Guest Log: 2025-10-12 03:19:53,637 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-11 22:23:21 (43516): Guest Log: 2025-10-12 03:20:15,630 | INFO     | [monitor] cgroup control has ended
2025-10-11 22:23:21 (43516): Guest Log: 2025-10-12 03:20:17,613 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139631785596736)>', '<ExcThread(monitor, started 139630452139776)>']
2025-10-11 22:23:21 (43516): Guest Log: 2025-10-12 03:20:18,159 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-11 22:23:21 (43516): Guest Log: 2025-10-12 03:20:18,159 | INFO     | [monitor] control thread has ended
2025-10-11 22:23:21 (43516): Guest Log: 2025-10-12 03:20:22,635 | INFO     | all workflow threads have been joined
2025-10-11 22:23:21 (43516): Guest Log: 2025-10-12 03:20:22,636 | INFO     | end of generic workflow (traces error code: 0)
2025-10-11 22:23:21 (43516): Guest Log: 2025-10-12 03:20:22,636 | INFO     | traces error code: 0
2025-10-11 22:23:21 (43516): Guest Log: 2025-10-12 03:20:22,636 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-11 22:23:21 (43516): Guest Log: 2025-10-12 03:20:22,745 [wrapper] ==== pilot stdout END ====
2025-10-11 22:23:21 (43516): Guest Log: 2025-10-12 03:20:22,752 [wrapper] ==== wrapper stdout RESUME ====
2025-10-11 22:23:21 (43516): Guest Log: 2025-10-12 03:20:22,759 [wrapper] pilotpid: 6086
2025-10-11 22:23:21 (43516): Guest Log: 2025-10-12 03:20:22,767 [wrapper] Pilot exit status: 0
2025-10-11 22:23:21 (43516): Guest Log: 2025-10-12 03:20:23,423 [wrapper] pandaids: 6838634803
2025-10-11 22:23:21 (43516): Guest Log: 2025-10-12 03:20:23,472 [wrapper] cleanup supervisor_pilot  2021 6087
2025-10-11 22:23:21 (43516): Guest Log: 2025-10-12 03:20:23,480 [wrapper] Test setup, not cleaning
2025-10-11 22:23:21 (43516): Guest Log: 2025-10-12 03:20:23,488 [wrapper] apfmon messages muted
2025-10-11 22:23:21 (43516): Guest Log: 2025-10-12 03:20:23,496 [wrapper] ==== wrapper stdout END ====
2025-10-11 22:23:21 (43516): Guest Log: 2025-10-12 03:20:23,503 [wrapper] ==== wrapper stderr END ====
2025-10-11 22:23:21 (43516): Guest Log:  *** Error codes and diagnostics ***
2025-10-11 22:23:21 (43516): Guest Log:     "exeErrorCode": 0,
2025-10-11 22:23:21 (43516): Guest Log:     "exeErrorDiag": "",
2025-10-11 22:23:21 (43516): Guest Log:     "pilotErrorCode": 0,
2025-10-11 22:23:21 (43516): Guest Log:     "pilotErrorDiag": "",
2025-10-11 22:23:21 (43516): Guest Log:  *** Listing of results directory ***
2025-10-11 22:23:22 (43516): Guest Log: total 189176
2025-10-11 22:23:22 (43516): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 11 17:33 pilot3.tar.gz
2025-10-11 22:23:22 (43516): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 11 17:37 queuedata.json
2025-10-11 22:23:22 (43516): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 11 17:38 runpilot2-wrapper.sh
2025-10-11 22:23:22 (43516): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 12 01:52 start_atlas.sh
2025-10-11 22:23:22 (43516): Guest Log: -rwxr-xr-x. 1 atlas atlas    569677 Oct 12 01:52 input.tar.gz
2025-10-11 22:23:22 (43516): Guest Log: -rwxr-xr-x. 1 atlas atlas      8444 Oct 12 01:52 init_data.xml
2025-10-11 22:23:22 (43516): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 12 01:52 EVNT.46676267._002495.pool.root.1 -> /data/./ATLAS.root_0
2025-10-11 22:23:22 (43516): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Oct 12 01:53 pandaJob.out
2025-10-11 22:23:22 (43516): Guest Log: -rw-------. 1 atlas atlas    975496 Oct 12 01:54 agis_schedconf.cvmfs.json
2025-10-11 22:23:22 (43516): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 12 01:54 agis_ddmendpoints.agis.ALL.json
2025-10-11 22:23:22 (43516): Guest Log: drwx------. 5 atlas atlas      4096 Oct 12 01:54 pilot3
2025-10-11 22:23:22 (43516): Guest Log: -rw-------. 1 atlas atlas 187850414 Oct 12 03:18 HITS.46676269._062098.pool.root.1
2025-10-11 22:23:22 (43516): Guest Log: -rw-------. 1 atlas atlas      1038 Oct 12 03:19 memory_monitor_summary.json
2025-10-11 22:23:22 (43516): Guest Log: -rw-------. 1 atlas atlas    314552 Oct 12 03:19 log.46676269._062098.job.log.tgz.1
2025-10-11 22:23:22 (43516): Guest Log: -rw-------. 1 atlas atlas        95 Oct 12 03:19 pilot_heartbeat.json
2025-10-11 22:23:22 (43516): Guest Log: -rw-------. 1 atlas atlas      7823 Oct 12 03:19 heartbeat.json
2025-10-11 22:23:22 (43516): Guest Log: -rw-------. 1 atlas atlas      4877 Oct 12 03:20 pilotlog.txt
2025-10-11 22:23:22 (43516): Guest Log: -rw-------. 1 atlas atlas    704075 Oct 12 03:20 log.46676269._062098.job.log.1
2025-10-11 22:23:22 (43516): Guest Log: -rw-------. 1 atlas atlas       357 Oct 12 03:20 output.list
2025-10-11 22:23:22 (43516): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 12 03:20 runtime_log
2025-10-11 22:23:22 (43516): Guest Log: -rw-------. 1 atlas atlas   1034240 Oct 12 03:20 result.tar.gz
2025-10-11 22:23:22 (43516): Guest Log: -rw-------. 1 atlas atlas       657 Oct 12 03:20 tRDLDm2isR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmsKSMDmPeskXo.diag
2025-10-11 22:23:22 (43516): Guest Log: -rw-r--r--. 1 atlas atlas      8645 Oct 12 03:20 runtime_log.err
2025-10-11 22:23:22 (43516): Guest Log: Looking for outputfile HITS.46676269._062098.pool.root.1
2025-10-11 22:23:22 (43516): Guest Log: HITS file was successfully produced
2025-10-11 22:23:22 (43516): Guest Log: -rw-------. 1 atlas atlas 187850414 Oct 12 03:18 /home/atlas/RunAtlas/HITS.46676269._062098.pool.root.1
2025-10-11 22:23:23 (43516): Guest Log: Successfully finished the ATLAS job!
2025-10-11 22:23:23 (43516): Guest Log: Copying the results back to the shared directory!
2025-10-11 22:23:23 (43516): Guest Log:  *** Contents of shared directory: ***
2025-10-11 22:23:23 (43516): Guest Log: total 401068
2025-10-11 22:23:23 (43516): Guest Log: -rwxrwxrwx. 1 root root 221201731 Oct 12 01:51 ATLAS.root_0
2025-10-11 22:23:23 (43516): Guest Log: -rwxrwxrwx. 1 root root 187850414 Oct 12  2025 HITS.pool.root.1
2025-10-11 22:23:23 (43516): Guest Log: -rwxrwxrwx. 1 root root      8444 Oct 12 01:51 init_data.xml
2025-10-11 22:23:23 (43516): Guest Log: -rwxrwxrwx. 1 root root    569677 Oct 11 22:45 input.tar.gz
2025-10-11 22:23:23 (43516): Guest Log: -rwxrwxrwx. 1 root root   1034240 Oct 12  2025 result.tar.gz
2025-10-11 22:23:23 (43516): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 11 22:45 start_atlas.sh
2025-10-11 22:23:23 (43516): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-11 22:23:23 (43516): VM Completion File Detected.
2025-10-11 22:23:23 (43516): Powering off VM.
2025-10-11 22:23:24 (43516): Successfully stopped VM.
2025-10-11 22:23:24 (43516): Deregistering VM. (boinc_c55cd813406695e6, slot#2)
2025-10-11 22:23:24 (43516): Removing network bandwidth throttle group from VM.
2025-10-11 22:23:24 (43516): Removing VM from VirtualBox.
2025-10-11 22:23:30 (43516): called boinc_finish(0)

</stderr_txt>
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