Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:10:09 (2924524): wrapper (7.7.26015): starting
09:10:09 (2924524): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 09:10:09] Arguments: --nthreads 3
[2025-10-12 09:10:09] Threads: 3
[2025-10-12 09:10:09] Checking for CVMFS
[2025-10-12 09:10:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 09:10:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 09:10:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 09:10:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 09:10:09] 2.9.2.0 1694695 4031 82116 151611 3 57 29868378 36864000 0 130560 0 3222054 99.991 136197 922 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 09:10:09] CVMFS is ok
[2025-10-12 09:10:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 09:10:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 09:10:09] Further information can be found at the LHC@home message board.
[2025-10-12 09:10:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 09:10:09] Checking for apptainer binary...
[2025-10-12 09:10:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 09:10:09] Running /usr/bin/apptainer --version
[2025-10-12 09:10:09] apptainer version 1.4.1-1.1
[2025-10-12 09:10:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 09:10:09] thA312a
[2025-10-12 09:10:09] apptainer works
[2025-10-12 09:10:09] Set ATHENA_PROC_NUMBER=3
[2025-10-12 09:10:09] Set ATHENA_CORE_NUMBER=3
[2025-10-12 09:10:09] Starting ATLAS job with PandaID=6838117033
[2025-10-12 09:10:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 10:30:27]  *** The last 200 lines of the pilot log: ***
[2025-10-12 10:30:27] 2025-10-12 08:30:05,950 | INFO     | will attempt to kill all subprocesses of pid=2934687
[2025-10-12 10:30:27] 2025-10-12 08:30:05,992 | INFO     | process IDs to be killed: [2934687] (in reverse order)
[2025-10-12 10:30:27] 2025-10-12 08:30:06,017 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 10:30:27] 2025-10-12 08:30:06,017 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 10:30:27] 2025-10-12 08:30:06,019 | INFO     | did not find any defunct processes belonging to 2934687
[2025-10-12 10:30:27] 2025-10-12 08:30:06,020 | INFO     | did not find any defunct processes belonging to 2934687
[2025-10-12 10:30:27] 2025-10-12 08:30:06,020 | INFO     | ready for new job
[2025-10-12 10:30:27] 2025-10-12 08:30:06,020 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 10:30:27] 2025-10-12 08:30:06,020 | INFO     | ***************************************
[2025-10-12 10:30:27] 2025-10-12 08:30:06,021 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 10:30:27] 2025-10-12 08:30:06,021 | INFO     | ***************************************
[2025-10-12 10:30:27] 2025-10-12 08:30:06,021 | INFO     | 
[2025-10-12 10:30:27] 2025-10-12 08:30:06,021 | INFO     | architecture information:
[2025-10-12 10:30:27] 2025-10-12 08:30:06,021 | INFO     | executing command: cat /etc/os-release
[2025-10-12 10:30:27] 2025-10-12 08:30:06,030 | INFO     | cat /etc/os-release:
[2025-10-12 10:30:27] NAME="CentOS Linux"
[2025-10-12 10:30:27] VERSION="7 (Core)"
[2025-10-12 10:30:27] ID="centos"
[2025-10-12 10:30:27] ID_LIKE="rhel fedora"
[2025-10-12 10:30:27] VERSION_ID="7"
[2025-10-12 10:30:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 10:30:27] ANSI_COLOR="0;31"
[2025-10-12 10:30:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 10:30:27] HOME_URL="https://www.centos.org/"
[2025-10-12 10:30:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 10:30:27] 
[2025-10-12 10:30:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 10:30:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 10:30:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 10:30:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 10:30:27] 
[2025-10-12 10:30:27] 2025-10-12 08:30:06,030 | INFO     | ***************************************
[2025-10-12 10:30:27] 2025-10-12 08:30:06,534 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 10:30:27] 2025-10-12 08:30:06,547 | INFO     | sufficient remaining disk space (274696503296 B)
[2025-10-12 10:30:27] 2025-10-12 08:30:06,547 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 10:30:27] 2025-10-12 08:30:06,547 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 10:30:27] 2025-10-12 08:30:06,547 | INFO     | update_server=False
[2025-10-12 10:30:27] 2025-10-12 08:30:06,547 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 10:30:27] 2025-10-12 08:30:06,547 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:30:27] 2025-10-12 08:30:06,547 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:30:27] 2025-10-12 08:30:06,548 | INFO     | aborting loop
[2025-10-12 10:30:27] 2025-10-12 08:30:06,548 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 10:30:27] 2025-10-12 08:30:06,548 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 10:30:27] 2025-10-12 08:30:06,548 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 10:30:27] 2025-10-12 08:30:06,548 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 10:30:27] 2025-10-12 08:30:06,548 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 10:30:27] 2025-10-12 08:30:06,548 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 10:30:27] 2025-10-12 08:30:06,682 | INFO     | all data control threads have been joined
[2025-10-12 10:30:27] 2025-10-12 08:30:06,884 | INFO     | all job control threads have been joined
[2025-10-12 10:30:27] 2025-10-12 08:30:07,054 | INFO     | all payload control threads have been joined
[2025-10-12 10:30:27] 2025-10-12 08:30:07,553 | INFO     | [job] retrieve thread has finished
[2025-10-12 10:30:27] 2025-10-12 08:30:07,553 | INFO     | [job] job monitor thread has finished
[2025-10-12 10:30:27] 2025-10-12 08:30:07,553 | INFO     | [job] queue monitor thread has finished
[2025-10-12 10:30:27] 2025-10-12 08:30:07,688 | INFO     | [data] control thread has finished
[2025-10-12 10:30:27] 2025-10-12 08:30:07,890 | INFO     | [job] control thread has finished
[2025-10-12 10:30:27] 2025-10-12 08:30:08,032 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 10:30:27] 2025-10-12 08:30:08,060 | INFO     | [payload] control thread has finished
[2025-10-12 10:30:27] 2025-10-12 08:30:08,282 | INFO     | [payload] failed_post thread has finished
[2025-10-12 10:30:27] 2025-10-12 08:30:08,554 | INFO     | [data] copytool_out thread has finished
[2025-10-12 10:30:27] 2025-10-12 08:30:08,647 | INFO     | [data] copytool_in thread has finished
[2025-10-12 10:30:27] 2025-10-12 08:30:08,811 | INFO     | [payload] validate_post thread has finished
[2025-10-12 10:30:27] 2025-10-12 08:30:08,921 | INFO     | [job] validate thread has finished
[2025-10-12 10:30:27] 2025-10-12 08:30:09,009 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 10:30:27] 2025-10-12 08:30:09,009 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 10:30:27] 2025-10-12 08:30:10,555 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 10:30:27] 2025-10-12 08:30:17,271 | INFO     | job.realtimelogging is not enabled
[2025-10-12 10:30:27] 2025-10-12 08:30:18,276 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 10:30:27] 2025-10-12 08:30:21,327 | INFO     | [monitor] cgroup control has ended
[2025-10-12 10:30:27] 2025-10-12 08:30:22,433 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139649776265024)>', '<ExcThread(monitor, started 139648907077376)>']
[2025-10-12 10:30:27] 2025-10-12 08:30:22,631 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 10:30:27] 2025-10-12 08:30:22,632 | INFO     | [monitor] control thread has ended
[2025-10-12 10:30:27] 2025-10-12 08:30:27,459 | INFO     | all workflow threads have been joined
[2025-10-12 10:30:27] 2025-10-12 08:30:27,459 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 10:30:27] 2025-10-12 08:30:27,459 | INFO     | traces error code: 0
[2025-10-12 10:30:27] 2025-10-12 08:30:27,460 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 10:30:27] 2025-10-12 08:30:27,509 [wrapper] ==== pilot stdout END ====
[2025-10-12 10:30:27] 2025-10-12 08:30:27,512 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 10:30:27] 2025-10-12 08:30:27,515 [wrapper] pilotpid: 2928243
[2025-10-12 10:30:27] 2025-10-12 08:30:27,517 [wrapper] Pilot exit status: 0
[2025-10-12 10:30:27] 2025-10-12 08:30:27,525 [wrapper] pandaids: 6838117033
[2025-10-12 10:30:27] 2025-10-12 08:30:27,542 [wrapper] cleanup supervisor_pilot 2947099 2928244
[2025-10-12 10:30:27] 2025-10-12 08:30:27,544 [wrapper] Test setup, not cleaning
[2025-10-12 10:30:27] 2025-10-12 08:30:27,547 [wrapper] apfmon messages muted
[2025-10-12 10:30:27] 2025-10-12 08:30:27,549 [wrapper] ==== wrapper stdout END ====
[2025-10-12 10:30:27] 2025-10-12 08:30:27,552 [wrapper] ==== wrapper stderr END ====
[2025-10-12 10:30:27]  *** Error codes and diagnostics ***
[2025-10-12 10:30:27]     "exeErrorCode": 0,
[2025-10-12 10:30:27]     "exeErrorDiag": "",
[2025-10-12 10:30:27]     "pilotErrorCode": 0,
[2025-10-12 10:30:27]     "pilotErrorDiag": "",
[2025-10-12 10:30:27]  *** Listing of results directory ***
[2025-10-12 10:30:27] total 412104
[2025-10-12 10:30:27] -rw-r--r-- 1 boinc boinc    557409 Oct 11 07:13 pilot3.tar.gz
[2025-10-12 10:30:27] -rw-r--r-- 1 boinc boinc      5112 Oct 11 07:16 queuedata.json
[2025-10-12 10:30:27] -rwx------ 1 boinc boinc     36292 Oct 11 07:17 runpilot2-wrapper.sh
[2025-10-12 10:30:27] -rw-r--r-- 1 boinc boinc       100 Oct 12 09:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 10:30:27] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 09:10 run_atlas
[2025-10-12 10:30:27] -rw-r--r-- 1 boinc boinc       105 Oct 12 09:10 job.xml
[2025-10-12 10:30:27] -rw-r--r-- 2 boinc boinc 222633463 Oct 12 09:10 EVNT.46676267._002080.pool.root.1
[2025-10-12 10:30:27] -rw-r--r-- 2 boinc boinc    569682 Oct 12 09:10 input.tar.gz
[2025-10-12 10:30:27] -rw-r--r-- 2 boinc boinc     15120 Oct 12 09:10 start_atlas.sh
[2025-10-12 10:30:27] drwxrwx--x 2 boinc boinc      4096 Oct 12 09:10 shared
[2025-10-12 10:30:27] -rw-r--r-- 1 boinc boinc         0 Oct 12 09:10 boinc_setup_complete
[2025-10-12 10:30:27] -rw-r--r-- 1 boinc boinc      6447 Oct 12 09:10 init_data.xml
[2025-10-12 10:30:27] -rw-r--r-- 1 boinc boinc         0 Oct 12 09:10 boinc_lockfile
[2025-10-12 10:30:27] -rw-r--r-- 1 boinc boinc      2550 Oct 12 09:10 pandaJob.out
[2025-10-12 10:30:27] -rw------- 1 boinc boinc    975528 Oct 12 09:10 agis_schedconf.cvmfs.json
[2025-10-12 10:30:27] -rw------- 1 boinc boinc   1560580 Oct 12 09:10 agis_ddmendpoints.agis.ALL.json
[2025-10-12 10:30:27] drwx------ 5 boinc boinc      4096 Oct 12 09:10 pilot3
[2025-10-12 10:30:27] -rw------- 1 boinc boinc        95 Oct 12 10:29 pilot_heartbeat.json
[2025-10-12 10:30:27] -rw------- 1 boinc boinc 193533618 Oct 12 10:29 HITS.46676269._051763.pool.root.1
[2025-10-12 10:30:27] -rw-r--r-- 1 boinc boinc       529 Oct 12 10:29 boinc_task_state.xml
[2025-10-12 10:30:27] -rw------- 1 boinc boinc      1017 Oct 12 10:29 memory_monitor_summary.json
[2025-10-12 10:30:27] -rw------- 1 boinc boinc    263713 Oct 12 10:29 log.46676269._051763.job.log.tgz.1
[2025-10-12 10:30:27] -rw------- 1 boinc boinc      7749 Oct 12 10:30 heartbeat.json
[2025-10-12 10:30:27] -rw-r--r-- 1 boinc boinc      8192 Oct 12 10:30 boinc_mmap_file
[2025-10-12 10:30:27] -rw-r--r-- 1 boinc boinc        27 Oct 12 10:30 wrapper_checkpoint.txt
[2025-10-12 10:30:27] -rw------- 1 boinc boinc      4628 Oct 12 10:30 pilotlog.txt
[2025-10-12 10:30:27] -rw------- 1 boinc boinc    704567 Oct 12 10:30 log.46676269._051763.job.log.1
[2025-10-12 10:30:27] -rw------- 1 boinc boinc       357 Oct 12 10:30 output.list
[2025-10-12 10:30:27] -rw-r--r-- 1 boinc boinc       620 Oct 12 10:30 runtime_log
[2025-10-12 10:30:27] -rw------- 1 boinc boinc    983040 Oct 12 10:30 result.tar.gz
[2025-10-12 10:30:27] -rw------- 1 boinc boinc       659 Oct 12 10:30 x9nLDm19gR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1TfNDm860bTo.diag
[2025-10-12 10:30:27] -rw-r--r-- 1 boinc boinc      8782 Oct 12 10:30 runtime_log.err
[2025-10-12 10:30:27] -rw-r--r-- 1 boinc boinc     10212 Oct 12 10:30 stderr.txt
[2025-10-12 10:30:27] HITS file was successfully produced:
[2025-10-12 10:30:27] -rw------- 1 boinc boinc 193533618 Oct 12 10:29 shared/HITS.pool.root.1
[2025-10-12 10:30:27]  *** Contents of shared directory: ***
[2025-10-12 10:30:27] total 407960
[2025-10-12 10:30:27] -rw-r--r-- 2 boinc boinc 222633463 Oct 12 09:10 ATLAS.root_0
[2025-10-12 10:30:27] -rw-r--r-- 2 boinc boinc    569682 Oct 12 09:10 input.tar.gz
[2025-10-12 10:30:27] -rw-r--r-- 2 boinc boinc     15120 Oct 12 09:10 start_atlas.sh
[2025-10-12 10:30:27] -rw------- 1 boinc boinc 193533618 Oct 12 10:29 HITS.pool.root.1
[2025-10-12 10:30:27] -rw------- 1 boinc boinc    983040 Oct 12 10:30 result.tar.gz
10:30:28 (2924524): run_atlas exited; CPU time 13708.770409
10:30:28 (2924524): called boinc_finish(0)

</stderr_txt>
]]>

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