Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:22:26 (3185993): wrapper (7.7.26015): starting
08:22:26 (3185993): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 08:22:26] Arguments: --nthreads 4
[2025-10-13 08:22:26] Threads: 4
[2025-10-13 08:22:26] Checking for CVMFS
[2025-10-13 08:22:26] No cvmfs_config command found, will try listing directly
[2025-10-13 08:22:26] CVMFS is ok
[2025-10-13 08:22:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 08:22:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 08:22:26] Further information can be found at the LHC@home message board.
[2025-10-13 08:22:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 08:22:26] Checking for apptainer binary...
[2025-10-13 08:22:26] which: no apptainer in ((null))
[2025-10-13 08:22:26] apptainer is not installed, using version from CVMFS
[2025-10-13 08:22:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 08:22:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-10-13 08:22:27] apptainer works
[2025-10-13 08:22:27] Set ATHENA_PROC_NUMBER=4
[2025-10-13 08:22:27] Set ATHENA_CORE_NUMBER=4
[2025-10-13 08:22:27] Starting ATLAS job with PandaID=6838634323
[2025-10-13 08:22:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 11:01:41]  *** The last 200 lines of the pilot log: ***
[2025-10-13 11:01:41] 2025-10-13 08:55:23,326 | INFO     | mean x: 1760341139.5
[2025-10-13 11:01:41] 2025-10-13 08:55:23,326 | INFO     | mean y: 2292822.3866666667
[2025-10-13 11:01:41] 2025-10-13 08:55:23,326 | INFO     | -- intersect: -20555267753.04188
[2025-10-13 11:01:41] 2025-10-13 08:55:23,326 | INFO     | intersect: -20555267753.04188
[2025-10-13 11:01:41] 2025-10-13 08:55:23,327 | INFO     | chi2: 2.1913155175095516
[2025-10-13 11:01:41] 2025-10-13 08:55:23,327 | INFO     | sum of square deviations: 945282840.0
[2025-10-13 11:01:41] 2025-10-13 08:55:23,328 | INFO     | sum of deviations: 21312670562.000004
[2025-10-13 11:01:41] 2025-10-13 08:55:23,328 | INFO     | mean x: 1760340987.0
[2025-10-13 11:01:41] 2025-10-13 08:55:23,328 | INFO     | mean y: 2306127.951724138
[2025-10-13 11:01:41] 2025-10-13 08:55:23,328 | INFO     | -- intersect: -39686944480.593056
[2025-10-13 11:01:41] 2025-10-13 08:55:23,328 | INFO     | intersect: -39686944480.593056
[2025-10-13 11:01:41] 2025-10-13 08:55:23,328 | INFO     | chi2: 1.3364205986364612
[2025-10-13 11:01:41] 2025-10-13 08:55:23,328 | INFO     | current chi2=1.3364205986364612 (change=39.01286291463338 %)
[2025-10-13 11:01:41] 2025-10-13 08:55:23,328 | INFO     | sum of square deviations: 850825255.0
[2025-10-13 11:01:41] 2025-10-13 08:55:23,329 | INFO     | sum of deviations: 20536302578.000008
[2025-10-13 11:01:41] 2025-10-13 08:55:23,329 | INFO     | mean x: 1760340834.5
[2025-10-13 11:01:41] 2025-10-13 08:55:23,329 | INFO     | mean y: 2304874.0285714287
[2025-10-13 11:01:41] 2025-10-13 08:55:23,329 | INFO     | -- intersect: -42486904050.19528
[2025-10-13 11:01:41] 2025-10-13 08:55:23,329 | INFO     | intersect: -42486904050.19528
[2025-10-13 11:01:41] 2025-10-13 08:55:23,330 | INFO     | chi2: 1.3372330522909541
[2025-10-13 11:01:41] 2025-10-13 08:55:23,330 | INFO     | current chi2=1.3372330522909541 (change=-0.060793260394357486 %)
[2025-10-13 11:01:41] 2025-10-13 08:55:23,330 | INFO     | right removable region: 139
[2025-10-13 11:01:41] 2025-10-13 08:55:23,330 | INFO     | sum of square deviations: 945282840.0
[2025-10-13 11:01:41] 2025-10-13 08:55:23,331 | INFO     | sum of deviations: -6606836861.000001
[2025-10-13 11:01:41] 2025-10-13 08:55:23,331 | INFO     | mean x: 1760341292.0
[2025-10-13 11:01:41] 2025-10-13 08:55:23,331 | INFO     | mean y: 2320706.4068965516
[2025-10-13 11:01:41] 2025-10-13 08:55:23,331 | INFO     | -- intersect: 12305821038.567762
[2025-10-13 11:01:41] 2025-10-13 08:55:23,331 | INFO     | intersect: 12305821038.567762
[2025-10-13 11:01:41] 2025-10-13 08:55:23,331 | INFO     | chi2: 0.8889968844457008
[2025-10-13 11:01:41] 2025-10-13 08:55:23,331 | INFO     | current chi2=0.8889968844457008 (change=59.43090452551291 %)
[2025-10-13 11:01:41] 2025-10-13 08:55:23,331 | INFO     | sum of square deviations: 850825255.0
[2025-10-13 11:01:41] 2025-10-13 08:55:23,332 | INFO     | sum of deviations: -7515468674.500002
[2025-10-13 11:01:41] 2025-10-13 08:55:23,332 | INFO     | mean x: 1760341444.5
[2025-10-13 11:01:41] 2025-10-13 08:55:23,332 | INFO     | mean y: 2322130.8785714284
[2025-10-13 11:01:41] 2025-10-13 08:55:23,332 | INFO     | -- intersect: 15551685416.485123
[2025-10-13 11:01:41] 2025-10-13 08:55:23,332 | INFO     | intersect: 15551685416.485123
[2025-10-13 11:01:41] 2025-10-13 08:55:23,333 | INFO     | chi2: 0.88361247413804
[2025-10-13 11:01:41] 2025-10-13 08:55:23,333 | INFO     | current chi2=0.88361247413804 (change=0.6056725734216751 %)
[2025-10-13 11:01:41] 2025-10-13 08:55:23,333 | INFO     | left removable region: 20
[2025-10-13 11:01:41] 2025-10-13 08:55:23,333 | INFO     | sum of square deviations: 522502820.0
[2025-10-13 11:01:41] 2025-10-13 08:55:23,333 | INFO     | sum of deviations: 969724259.0
[2025-10-13 11:01:41] 2025-10-13 08:55:23,334 | INFO     | mean x: 1760341414.0
[2025-10-13 11:01:41] 2025-10-13 08:55:23,334 | INFO     | mean y: 2338539.092436975
[2025-10-13 11:01:41] 2025-10-13 08:55:23,334 | INFO     | -- intersect: -3264717078.479469
[2025-10-13 11:01:41] 2025-10-13 08:55:23,334 | INFO     | intersect: -3264717078.479469
[2025-10-13 11:01:41] 2025-10-13 08:55:23,334 | INFO     | chi2: 4.7860337631774616e-05
[2025-10-13 11:01:41] 2025-10-13 08:55:23,334 | INFO     | -- intersect: -3264717078.479469
[2025-10-13 11:01:41] 2025-10-13 08:55:23,334 | INFO     | current memory leak: 1.86 B/s (using 119 data points, chi2=0.00)
[2025-10-13 11:01:41] 2025-10-13 08:55:23,335 | INFO     | could have reported an average CPU frequency of 2729 MHz (9 samples)
[2025-10-13 11:01:41] 2025-10-13 08:55:23,335 | INFO     | ..............................
[2025-10-13 11:01:41] 2025-10-13 08:55:23,335 | INFO     | . Timing measurements:
[2025-10-13 11:01:41] 2025-10-13 08:55:23,335 | INFO     | . get job = 0 s
[2025-10-13 11:01:41] 2025-10-13 08:55:23,335 | INFO     | . initial setup = 1 s
[2025-10-13 11:01:41] 2025-10-13 08:55:23,336 | INFO     | . payload setup = 8 s
[2025-10-13 11:01:41] 2025-10-13 08:55:23,336 | INFO     | . stage-in = 0 s
[2025-10-13 11:01:41] 2025-10-13 08:55:23,336 | INFO     | . payload execution = 9122 s
[2025-10-13 11:01:41] 2025-10-13 08:55:23,336 | INFO     | . stage-out = 0 s
[2025-10-13 11:01:41] 2025-10-13 08:55:23,336 | INFO     | . log creation = 0 s
[2025-10-13 11:01:41] 2025-10-13 08:55:23,336 | INFO     | ..............................
[2025-10-13 11:01:41] 2025-10-13 08:55:23,435 | INFO     | 
[2025-10-13 11:01:41] 2025-10-13 08:55:23,435 | INFO     | job summary report
[2025-10-13 11:01:41] 2025-10-13 08:55:23,435 | INFO     | --------------------------------------------------
[2025-10-13 11:01:41] 2025-10-13 08:55:23,436 | INFO     | PanDA job id: 6838634323
[2025-10-13 11:01:41] 2025-10-13 08:55:23,436 | INFO     | task id: 46676269
[2025-10-13 11:01:41] 2025-10-13 08:55:23,436 | INFO     | errors: (none)
[2025-10-13 11:01:41] 2025-10-13 08:55:23,436 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 11:01:41] 2025-10-13 08:55:23,436 | INFO     | pilot state: finished 
[2025-10-13 11:01:41] 2025-10-13 08:55:23,436 | INFO     | transexitcode: 0
[2025-10-13 11:01:41] 2025-10-13 08:55:23,436 | INFO     | exeerrorcode: 0
[2025-10-13 11:01:41] 2025-10-13 08:55:23,436 | INFO     | exeerrordiag: 
[2025-10-13 11:01:41] 2025-10-13 08:55:23,436 | INFO     | exitcode: 0
[2025-10-13 11:01:41] 2025-10-13 08:55:23,436 | INFO     | exitmsg: OK
[2025-10-13 11:01:41] 2025-10-13 08:55:23,436 | INFO     | cpuconsumptiontime: 34645 s
[2025-10-13 11:01:41] 2025-10-13 08:55:23,437 | INFO     | nevents: 400
[2025-10-13 11:01:41] 2025-10-13 08:55:23,437 | INFO     | neventsw: 0
[2025-10-13 11:01:41] 2025-10-13 08:55:23,437 | INFO     | pid: 3229358
[2025-10-13 11:01:41] 2025-10-13 08:55:23,437 | INFO     | pgrp: 3229358
[2025-10-13 11:01:41] 2025-10-13 08:55:23,437 | INFO     | corecount: 4
[2025-10-13 11:01:41] 2025-10-13 08:55:23,437 | INFO     | event service: False
[2025-10-13 11:01:41] 2025-10-13 08:55:23,437 | INFO     | sizes: {0: 2348867, 7: 2349129, 11: 2349157, 9135: 2377768, 9136: 2386790, 9137: 2386846, 9145: 2387260}
[2025-10-13 11:01:41] 2025-10-13 08:55:23,437 | INFO     | --------------------------------------------------
[2025-10-13 11:01:41] 2025-10-13 08:55:23,437 | INFO     | 
[2025-10-13 11:01:41] 2025-10-13 08:55:23,437 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/0
[2025-10-13 11:01:41] 2025-10-13 08:55:23,468 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 11:01:41] 2025-10-13 08:55:23,469 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 11:01:41] 2025-10-13 08:55:23,469 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 11:01:41] 2025-10-13 08:55:23,469 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 11:01:41] 2025-10-13 08:55:23,469 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 11:01:41] 2025-10-13 08:55:23,469 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 11:01:41] 2025-10-13 08:55:23,470 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 11:01:41] 2025-10-13 08:55:23,470 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 11:01:41] 2025-10-13 08:55:23,470 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 11:01:41] 2025-10-13 08:55:23,470 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 11:01:41] 2025-10-13 08:55:23,470 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 11:01:41] 2025-10-13 08:55:23,470 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 11:01:41] 2025-10-13 08:55:23,470 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 11:01:41] 2025-10-13 08:55:23,470 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 11:01:41] 2025-10-13 08:55:23,470 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 11:01:41] 2025-10-13 08:55:23,470 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 11:01:41] 2025-10-13 08:55:23,471 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 11:01:41] 2025-10-13 08:55:23,471 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 11:01:41] 2025-10-13 08:55:23,471 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 11:01:41] 2025-10-13 08:55:23,471 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 11:01:41] 2025-10-13 08:55:23,471 | INFO     | job 6838634323 has completed (purged errors)
[2025-10-13 11:01:41] 2025-10-13 08:55:23,471 | INFO     | overall cleanup function is called
[2025-10-13 11:01:41] 2025-10-13 08:55:24,487 | INFO     | --- collectZombieJob: --- 10, [3229358]
[2025-10-13 11:01:41] 2025-10-13 08:55:24,488 | INFO     | zombie collector waiting for pid 3229358
[2025-10-13 11:01:41] 2025-10-13 08:55:24,488 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 11:01:41] 2025-10-13 08:55:24,488 | INFO     | collected zombie processes
[2025-10-13 11:01:41] 2025-10-13 08:55:24,488 | INFO     | will attempt to kill all subprocesses of pid=3229358
[2025-10-13 11:01:41] 2025-10-13 08:55:24,981 | INFO     | PID=3199180 has CPU usage=22.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-13 11:01:41] 2025-10-13 08:55:24,982 | INFO     | .. there are 7 such processes running
[2025-10-13 11:01:41] 2025-10-13 08:55:25,655 | INFO     | number of running child processes to parent process 3229358: 1
[2025-10-13 11:01:41] 2025-10-13 08:55:25,656 | INFO     | maximum number of monitored processes: 6
[2025-10-13 11:01:41] 2025-10-13 08:55:25,656 | INFO     | aborting job monitoring since job object (job id=6838634323) has expired
[2025-10-13 11:01:41] 2025-10-13 08:55:26,001 | INFO     | process IDs to be killed: [3229358] (in reverse order)
[2025-10-13 11:01:41] 2025-10-13 08:55:26,243 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 11:01:41] 2025-10-13 08:55:26,243 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 11:01:41] 2025-10-13 08:55:26,276 | INFO     | did not find any defunct processes belonging to 3229358
[2025-10-13 11:01:41] 2025-10-13 08:55:26,305 | INFO     | did not find any defunct processes belonging to 3229358
[2025-10-13 11:01:41] 2025-10-13 08:55:26,306 | INFO     | ready for new job
[2025-10-13 11:01:41] 2025-10-13 08:55:26,306 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 11:01:41] 2025-10-13 08:55:26,309 | INFO     | ***************************************
[2025-10-13 11:01:41] 2025-10-13 08:55:26,309 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 11:01:41] 2025-10-13 08:55:26,309 | INFO     | ***************************************
[2025-10-13 11:01:41] 2025-10-13 08:55:26,309 | INFO     | 
[2025-10-13 11:01:41] 2025-10-13 08:55:26,317 | INFO     | architecture information:
[2025-10-13 11:01:41] 2025-10-13 08:55:26,318 | INFO     | executing command: cat /etc/os-release
[2025-10-13 11:01:41] 2025-10-13 08:55:26,339 | INFO     | cat /etc/os-release:
[2025-10-13 11:01:41] NAME="CentOS Linux"
[2025-10-13 11:01:41] VERSION="7 (Core)"
[2025-10-13 11:01:41] ID="centos"
[2025-10-13 11:01:41] ID_LIKE="rhel fedora"
[2025-10-13 11:01:41] VERSION_ID="7"
[2025-10-13 11:01:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 11:01:41] ANSI_COLOR="0;31"
[2025-10-13 11:01:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 11:01:41] HOME_URL="https://www.centos.org/"
[2025-10-13 11:01:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 11:01:41] 
[2025-10-13 11:01:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 11:01:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 11:01:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 11:01:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 11:01:41] 
[2025-10-13 11:01:41] 2025-10-13 08:55:26,340 | INFO     | ***************************************
[2025-10-13 11:01:41] 2025-10-13 08:55:26,843 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/0
[2025-10-13 11:01:41] 2025-10-13 08:55:26,869 | INFO     | sufficient remaining disk space (3334552420352 B)
[2025-10-13 11:01:41] 2025-10-13 08:55:26,870 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 11:01:41] 2025-10-13 08:55:26,870 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 11:01:41] 2025-10-13 08:55:26,870 | INFO     | update_server=False
[2025-10-13 11:01:41] 2025-10-13 08:55:26,870 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 11:01:41] 2025-10-13 08:55:26,871 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 11:01:41] 2025-10-13 08:55:26,871 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 11:01:41] 2025-10-13 08:55:26,871 | INFO     | aborting loop
[2025-10-13 11:01:41] 2025-10-13 08:55:27,245 | INFO     | all payload control threads have been joined
[2025-10-13 11:01:41] 2025-10-13 08:55:27,528 | INFO     | all data control threads have been joined
[2025-10-13 11:01:41] 2025-10-13 08:55:27,856 | INFO     | all job control threads have been joined
[2025-10-13 11:01:41] 2025-10-13 08:55:27,874 | INFO     | [job] job monitor thread has finished
[2025-10-13 11:01:41] 2025-10-13 08:55:27,876 | INFO     | [job] retrieve thread has finished
[2025-10-13 11:01:41] 2025-10-13 08:55:27,891 | INFO     | [data] copytool_in thread has finished
[2025-10-13 11:01:41] 2025-10-13 08:55:28,006 | INFO     | [payload] validate_post thread has finished
[2025-10-13 11:01:41] 2025-10-13 08:55:28,146 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 11:01:41] 2025-10-13 08:55:28,186 | INFO     | [job] validate thread has finished
[2025-10-13 11:01:41] 2025-10-13 08:55:28,250 | INFO     | [payload] control thread has finished
[2025-10-13 11:01:41] 2025-10-13 08:55:28,445 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 11:01:41] 2025-10-13 08:55:28,533 | INFO     | [data] control thread has finished
[2025-10-13 11:01:41] 2025-10-13 08:55:28,562 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 11:01:41] 2025-10-13 08:55:28,607 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 11:01:41] 2025-10-13 08:55:28,689 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 11:01:41] 2025-10-13 08:55:28,862 | INFO     | [job] control thread has finished
[2025-10-13 11:01:41] 2025-10-13 08:55:29,012 | INFO     | [payload] failed_post thread has finished
[2025-10-13 11:01:41] 2025-10-13 08:55:29,447 | INFO     | [job] queue monitor thread has finished
[2025-10-13 11:01:41] 2025-10-13 08:55:30,147 | INFO     | [data] copytool_out thread has finished
[2025-10-13 11:01:41] 2025-10-13 08:55:30,878 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 11:01:41] 2025-10-13 08:55:37,059 | INFO     | job.realtimelogging is not enabled
[2025-10-13 11:01:41] 2025-10-13 08:55:38,064 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 11:01:41] 2025-10-13 08:55:55,105 | INFO     | [monitor] cgroup control has ended
[2025-10-13 11:01:41] 2025-10-13 08:55:55,450 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23316044859200)>', '<ExcThread(monitor, started 23315804550912)>']
[2025-10-13 11:01:41] 2025-10-13 08:55:57,960 | INFO     | PID=3199180 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 11:01:41] 2025-10-13 08:55:57,960 | INFO     | .. there are 7 such processes running
[2025-10-13 11:01:41] 2025-10-13 08:55:57,960 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 11:01:41] 2025-10-13 08:55:57,960 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 11:01:41] 2025-10-13 08:55:57,960 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 11:01:41] 2025-10-13 08:55:57,961 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 11:01:41] 2025-10-13 08:55:57,961 | INFO     | [monitor] control thread has ended
[2025-10-13 11:01:41] 2025-10-13 08:56:00,455 | INFO     | all workflow threads have been joined
[2025-10-13 11:01:41] 2025-10-13 08:56:00,455 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 11:01:41] 2025-10-13 08:56:00,455 | INFO     | traces error code: 0
[2025-10-13 11:01:41] 2025-10-13 08:56:00,455 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 11:01:41] 2025-10-13 08:56:00,591 [wrapper] ==== pilot stdout END ====
[2025-10-13 11:01:41] 2025-10-13 08:56:00,596 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 11:01:41] 2025-10-13 08:56:00,599 [wrapper] pilotpid: 3199180
[2025-10-13 11:01:41] 2025-10-13 08:56:00,603 [wrapper] Pilot exit status: 0
[2025-10-13 11:01:41] 2025-10-13 08:56:00,616 [wrapper] pandaids: 6838634323
[2025-10-13 11:01:41] 2025-10-13 08:56:00,781 [wrapper] cleanup supervisor_pilot 3515520 3199182
[2025-10-13 11:01:41] 2025-10-13 08:56:00,785 [wrapper] Test setup, not cleaning
[2025-10-13 11:01:41] 2025-10-13 08:56:00,789 [wrapper] apfmon messages muted
[2025-10-13 11:01:41] 2025-10-13 08:56:00,792 [wrapper] ==== wrapper stdout END ====
[2025-10-13 11:01:41] 2025-10-13 08:56:00,796 [wrapper] ==== wrapper stderr END ====
[2025-10-13 11:01:41]  *** Error codes and diagnostics ***
[2025-10-13 11:01:41]     "exeErrorCode": 0,
[2025-10-13 11:01:41]     "exeErrorDiag": "",
[2025-10-13 11:01:41]     "pilotErrorCode": 0,
[2025-10-13 11:01:41]     "pilotErrorDiag": "",
[2025-10-13 11:01:41]  *** Listing of results directory ***
[2025-10-13 11:01:41] total 419060
[2025-10-13 11:01:41] -rw-r--r-- 1 boinc boinc      5112 Oct 11 19:18 queuedata.json
[2025-10-13 11:01:41] -rw-r--r-- 1 boinc boinc    557409 Oct 11 19:18 pilot3.tar.gz
[2025-10-13 11:01:41] -rwx------ 1 boinc boinc     36292 Oct 11 19:19 runpilot2-wrapper.sh
[2025-10-13 11:01:41] -rw-r--r-- 1 boinc boinc       100 Oct 13 08:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 11:01:41] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 08:22 run_atlas
[2025-10-13 11:01:41] -rw-r--r-- 1 boinc boinc       105 Oct 13 08:22 job.xml
[2025-10-13 11:01:41] -rw-r--r-- 2 boinc boinc 221604271 Oct 13 08:22 EVNT.46676267._002478.pool.root.1
[2025-10-13 11:01:41] -rw-r--r-- 1 boinc boinc      6687 Oct 13 08:22 init_data.xml
[2025-10-13 11:01:41] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:22 start_atlas.sh
[2025-10-13 11:01:41] drwxrwx--x 2 boinc boinc      4096 Oct 13 08:22 shared
[2025-10-13 11:01:41] -rw-r--r-- 2 boinc boinc    569677 Oct 13 08:22 input.tar.gz
[2025-10-13 11:01:41] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:22 boinc_lockfile
[2025-10-13 11:01:41] -rw-r--r-- 1 boinc boinc      2549 Oct 13 08:22 pandaJob.out
[2025-10-13 11:01:41] -rw------- 1 boinc boinc    973230 Oct 13 08:22 agis_schedconf.cvmfs.json
[2025-10-13 11:01:41] -rw------- 1 boinc boinc   1560580 Oct 13 08:22 agis_ddmendpoints.agis.ALL.json
[2025-10-13 11:01:41] drwx------ 5 boinc boinc      4096 Oct 13 08:22 pilot3
[2025-10-13 11:01:41] -rw------- 1 boinc boinc 200380410 Oct 13 10:54 HITS.46676269._061673.pool.root.1
[2025-10-13 11:01:41] -rw-r--r-- 1 boinc boinc       527 Oct 13 10:54 boinc_task_state.xml
[2025-10-13 11:01:41] -rw------- 1 boinc boinc      1024 Oct 13 10:55 memory_monitor_summary.json
[2025-10-13 11:01:41] -rw------- 1 boinc boinc        95 Oct 13 10:55 pilot_heartbeat.json
[2025-10-13 11:01:41] -rw------- 1 boinc boinc    318637 Oct 13 10:55 log.46676269._061673.job.log.tgz.1
[2025-10-13 11:01:41] -rw------- 1 boinc boinc      7774 Oct 13 10:55 heartbeat.json
[2025-10-13 11:01:41] -rw------- 1 boinc boinc      4907 Oct 13 10:56 pilotlog.txt
[2025-10-13 11:01:41] -rw------- 1 boinc boinc   1297259 Oct 13 10:56 log.46676269._061673.job.log.1
[2025-10-13 11:01:41] -rw------- 1 boinc boinc       357 Oct 13 10:56 output.list
[2025-10-13 11:01:41] -rw-r--r-- 1 boinc boinc       620 Oct 13 10:56 runtime_log
[2025-10-13 11:01:41] -rw------- 1 boinc boinc   1638400 Oct 13 10:56 result.tar.gz
[2025-10-13 11:01:41] -rw-r--r-- 1 boinc boinc      9084 Oct 13 10:56 runtime_log.err
[2025-10-13 11:01:41] -rw------- 1 boinc boinc       662 Oct 13 10:56 e0dLDm4QsR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmQJSMDm5kJXKn.diag
[2025-10-13 11:01:41] -rw-r--r-- 1 boinc boinc        25 Oct 13 11:01 wrapper_checkpoint.txt
[2025-10-13 11:01:41] -rw-r--r-- 1 boinc boinc      8192 Oct 13 11:01 boinc_mmap_file
[2025-10-13 11:01:41] -rw-r--r-- 1 boinc boinc     20859 Oct 13 11:01 stderr.txt
[2025-10-13 11:01:41] HITS file was successfully produced:
[2025-10-13 11:01:41] -rw------- 1 boinc boinc 200380410 Oct 13 10:54 shared/HITS.pool.root.1
[2025-10-13 11:01:41]  *** Contents of shared directory: ***
[2025-10-13 11:01:41] total 414280
[2025-10-13 11:01:41] -rw-r--r-- 2 boinc boinc 221604271 Oct 13 08:22 ATLAS.root_0
[2025-10-13 11:01:41] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:22 start_atlas.sh
[2025-10-13 11:01:41] -rw-r--r-- 2 boinc boinc    569677 Oct 13 08:22 input.tar.gz
[2025-10-13 11:01:41] -rw------- 1 boinc boinc 200380410 Oct 13 10:54 HITS.pool.root.1
[2025-10-13 11:01:41] -rw------- 1 boinc boinc   1638400 Oct 13 10:56 result.tar.gz
11:01:42 (3185993): run_atlas exited; CPU time 35237.355406
11:01:42 (3185993): called boinc_finish(0)

</stderr_txt>
]]>

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