Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:52:33 (2413798): wrapper (7.7.26015): starting
18:52:33 (2413798): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 18:52:33] Arguments: --nthreads 8
[2025-10-11 18:52:33] Threads: 8
[2025-10-11 18:52:33] Checking for CVMFS
[2025-10-11 18:52:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 18:52:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 18:52:33] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 18:52:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 18:52:34] 2.13.2.0 4980 36322 300792 151599 0 452 38829063 40960000 14448 16776704 0 70292793 99.827 27618574 39491 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 18:52:34] CVMFS is ok
[2025-10-11 18:52:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 18:52:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 18:52:34] Further information can be found at the LHC@home message board.
[2025-10-11 18:52:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 18:52:34] Checking for apptainer binary...
[2025-10-11 18:52:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 18:52:34] Running /usr/bin/apptainer --version
[2025-10-11 18:52:34] apptainer version 1.4.3-1.el9
[2025-10-11 18:52:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 18:52:34] c-206-40.aglt2.org
[2025-10-11 18:52:34] apptainer works
[2025-10-11 18:52:34] Set ATHENA_PROC_NUMBER=8
[2025-10-11 18:52:34] Set ATHENA_CORE_NUMBER=8
[2025-10-11 18:52:34] Starting ATLAS job with PandaID=6838634507
[2025-10-11 18:52:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 21:54:09]  *** The last 200 lines of the pilot log: ***
[2025-10-11 21:54:09] 2025-10-12 01:52:38,987 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 21:54:09] 2025-10-12 01:52:38,987 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 21:54:09] 2025-10-12 01:52:38,990 | INFO     | fitting pss+swap vs Time
[2025-10-11 21:54:09] 2025-10-12 01:52:38,990 | INFO     | sum of square deviations: 1662442070.537146
[2025-10-11 21:54:09] 2025-10-12 01:52:38,991 | INFO     | sum of deviations: 80851734165.50282
[2025-10-11 21:54:09] 2025-10-12 01:52:38,991 | INFO     | mean x: 1760228584.9485714
[2025-10-11 21:54:09] 2025-10-12 01:52:38,991 | INFO     | mean y: 2413105.6114285714
[2025-10-11 21:54:09] 2025-10-12 01:52:38,991 | INFO     | -- intersect: -85605101371.44783
[2025-10-11 21:54:09] 2025-10-12 01:52:38,992 | INFO     | intersect: -85605101371.44783
[2025-10-11 21:54:09] 2025-10-12 01:52:38,992 | INFO     | chi2: 5.22551482474572
[2025-10-11 21:54:09] 2025-10-12 01:52:38,992 | INFO     | sum of square deviations: 1523975253.347067
[2025-10-11 21:54:09] 2025-10-12 01:52:38,993 | INFO     | sum of deviations: 89371675916.54117
[2025-10-11 21:54:09] 2025-10-12 01:52:38,993 | INFO     | mean x: 1760228432.4176471
[2025-10-11 21:54:09] 2025-10-12 01:52:38,993 | INFO     | mean y: 2422214.7529411763
[2025-10-11 21:54:09] 2025-10-12 01:52:38,993 | INFO     | -- intersect: -103224034156.90097
[2025-10-11 21:54:09] 2025-10-12 01:52:38,993 | INFO     | intersect: -103224034156.90097
[2025-10-11 21:54:09] 2025-10-12 01:52:38,993 | INFO     | chi2: 4.5441556134108
[2025-10-11 21:54:09] 2025-10-12 01:52:38,993 | INFO     | current chi2=4.5441556134108 (change=13.039082926495679 %)
[2025-10-11 21:54:09] 2025-10-12 01:52:38,994 | INFO     | right removable region: 169
[2025-10-11 21:54:09] 2025-10-12 01:52:38,994 | INFO     | sum of square deviations: 1523979538.405878
[2025-10-11 21:54:09] 2025-10-12 01:52:38,995 | INFO     | sum of deviations: 28457227362.700012
[2025-10-11 21:54:09] 2025-10-12 01:52:38,995 | INFO     | mean x: 1760228737.4764705
[2025-10-11 21:54:09] 2025-10-12 01:52:38,995 | INFO     | mean y: 2470702.3
[2025-10-11 21:54:09] 2025-10-12 01:52:38,995 | INFO     | -- intersect: -32866231357.258514
[2025-10-11 21:54:09] 2025-10-12 01:52:38,995 | INFO     | intersect: -32866231357.258514
[2025-10-11 21:54:09] 2025-10-12 01:52:38,995 | INFO     | chi2: 1.6410716578738378
[2025-10-11 21:54:09] 2025-10-12 01:52:38,995 | INFO     | current chi2=1.6410716578738378 (change=68.59502435812735 %)
[2025-10-11 21:54:09] 2025-10-12 01:52:38,996 | INFO     | sum of square deviations: 1393444750.9939373
[2025-10-11 21:54:09] 2025-10-12 01:52:38,996 | INFO     | sum of deviations: 6246145536.769697
[2025-10-11 21:54:09] 2025-10-12 01:52:38,996 | INFO     | mean x: 1760228889.9939394
[2025-10-11 21:54:09] 2025-10-12 01:52:38,996 | INFO     | mean y: 2496460.7696969695
[2025-10-11 21:54:09] 2025-10-12 01:52:38,997 | INFO     | -- intersect: -7887766728.414011
[2025-10-11 21:54:09] 2025-10-12 01:52:38,997 | INFO     | intersect: -7887766728.414011
[2025-10-11 21:54:09] 2025-10-12 01:52:38,997 | INFO     | chi2: 0.9303879054284816
[2025-10-11 21:54:09] 2025-10-12 01:52:38,997 | INFO     | current chi2=0.9303879054284816 (change=43.30607679655583 %)
[2025-10-11 21:54:09] 2025-10-12 01:52:38,997 | INFO     | sum of square deviations: 1270574459.9437492
[2025-10-11 21:54:09] 2025-10-12 01:52:38,998 | INFO     | sum of deviations: 140054993.07499886
[2025-10-11 21:54:09] 2025-10-12 01:52:38,998 | INFO     | mean x: 1760229042.51875
[2025-10-11 21:54:09] 2025-10-12 01:52:38,998 | INFO     | mean y: 2503992.975
[2025-10-11 21:54:09] 2025-10-12 01:52:38,998 | INFO     | -- intersect: -191525459.16060305
[2025-10-11 21:54:09] 2025-10-12 01:52:38,999 | INFO     | intersect: -191525459.16060305
[2025-10-11 21:54:09] 2025-10-12 01:52:38,999 | INFO     | chi2: 0.8831326281246696
[2025-10-11 21:54:09] 2025-10-12 01:52:38,999 | INFO     | current chi2=0.8831326281246696 (change=5.079094109896987 %)
[2025-10-11 21:54:09] 2025-10-12 01:52:38,999 | INFO     | left removable region: 30
[2025-10-11 21:54:09] 2025-10-12 01:52:38,999 | INFO     | sum of square deviations: 833062594.6474824
[2025-10-11 21:54:09] 2025-10-12 01:52:39,000 | INFO     | sum of deviations: -4439711833.230218
[2025-10-11 21:54:09] 2025-10-12 01:52:39,000 | INFO     | mean x: 1760229317.0503597
[2025-10-11 21:54:09] 2025-10-12 01:52:39,000 | INFO     | mean y: 2538767.6043165466
[2025-10-11 21:54:09] 2025-10-12 01:52:39,000 | INFO     | -- intersect: 9383479621.651634
[2025-10-11 21:54:09] 2025-10-12 01:52:39,000 | INFO     | intersect: 9383479621.651634
[2025-10-11 21:54:09] 2025-10-12 01:52:39,000 | INFO     | chi2: 0.013183946813473508
[2025-10-11 21:54:09] 2025-10-12 01:52:39,000 | INFO     | -- intersect: 9383479621.651634
[2025-10-11 21:54:09] 2025-10-12 01:52:39,000 | INFO     | current memory leak: -5.33 B/s (using 139 data points, chi2=0.01)
[2025-10-11 21:54:09] 2025-10-12 01:52:39,001 | INFO     | could have reported an average CPU frequency of 3202 MHz (9 samples)
[2025-10-11 21:54:09] 2025-10-12 01:52:39,001 | INFO     | ..............................
[2025-10-11 21:54:09] 2025-10-12 01:52:39,001 | INFO     | . Timing measurements:
[2025-10-11 21:54:09] 2025-10-12 01:52:39,001 | INFO     | . get job = 0 s
[2025-10-11 21:54:09] 2025-10-12 01:52:39,001 | INFO     | . initial setup = 5 s
[2025-10-11 21:54:09] 2025-10-12 01:52:39,001 | INFO     | . payload setup = 22 s
[2025-10-11 21:54:09] 2025-10-12 01:52:39,001 | INFO     | . stage-in = 0 s
[2025-10-11 21:54:09] 2025-10-12 01:52:39,001 | INFO     | . payload execution = 10674 s
[2025-10-11 21:54:09] 2025-10-12 01:52:39,001 | INFO     | . stage-out = 1 s
[2025-10-11 21:54:09] 2025-10-12 01:52:39,002 | INFO     | . log creation = 0 s
[2025-10-11 21:54:09] 2025-10-12 01:52:39,002 | INFO     | ..............................
[2025-10-11 21:54:09] 2025-10-12 01:52:39,092 | INFO     | 
[2025-10-11 21:54:09] 2025-10-12 01:52:39,093 | INFO     | job summary report
[2025-10-11 21:54:09] 2025-10-12 01:52:39,093 | INFO     | --------------------------------------------------
[2025-10-11 21:54:09] 2025-10-12 01:52:39,093 | INFO     | PanDA job id: 6838634507
[2025-10-11 21:54:09] 2025-10-12 01:52:39,094 | INFO     | task id: 46676269
[2025-10-11 21:54:09] 2025-10-12 01:52:39,094 | INFO     | errors: (none)
[2025-10-11 21:54:09] 2025-10-12 01:52:39,094 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 21:54:09] 2025-10-12 01:52:39,094 | INFO     | pilot state: finished 
[2025-10-11 21:54:09] 2025-10-12 01:52:39,094 | INFO     | transexitcode: 0
[2025-10-11 21:54:09] 2025-10-12 01:52:39,094 | INFO     | exeerrorcode: 0
[2025-10-11 21:54:09] 2025-10-12 01:52:39,094 | INFO     | exeerrordiag: 
[2025-10-11 21:54:09] 2025-10-12 01:52:39,094 | INFO     | exitcode: 0
[2025-10-11 21:54:09] 2025-10-12 01:52:39,094 | INFO     | exitmsg: OK
[2025-10-11 21:54:09] 2025-10-12 01:52:39,094 | INFO     | cpuconsumptiontime: 34245 s
[2025-10-11 21:54:09] 2025-10-12 01:52:39,094 | INFO     | nevents: 400
[2025-10-11 21:54:09] 2025-10-12 01:52:39,094 | INFO     | neventsw: 0
[2025-10-11 21:54:09] 2025-10-12 01:52:39,094 | INFO     | pid: 2425368
[2025-10-11 21:54:09] 2025-10-12 01:52:39,094 | INFO     | pgrp: 2425368
[2025-10-11 21:54:09] 2025-10-12 01:52:39,094 | INFO     | corecount: 8
[2025-10-11 21:54:09] 2025-10-12 01:52:39,094 | INFO     | event service: False
[2025-10-11 21:54:09] 2025-10-12 01:52:39,094 | INFO     | sizes: {0: 2348686, 1: 2348885, 2: 2348885, 12: 2348913, 16: 2349203, 23: 2349231, 10699: 2378450, 10701: 2387448, 10704: 2387504, 10713: 2387762}
[2025-10-11 21:54:09] 2025-10-12 01:52:39,095 | INFO     | --------------------------------------------------
[2025-10-11 21:54:09] 2025-10-12 01:52:39,095 | INFO     | 
[2025-10-11 21:54:09] 2025-10-12 01:52:39,095 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-11 21:54:09] 2025-10-12 01:52:39,117 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 21:54:09] 2025-10-12 01:52:39,117 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 21:54:09] 2025-10-12 01:52:39,117 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 21:54:09] 2025-10-12 01:52:39,118 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 21:54:09] 2025-10-12 01:52:39,118 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 21:54:09] 2025-10-12 01:52:39,118 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 21:54:09] 2025-10-12 01:52:39,118 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 21:54:09] 2025-10-12 01:52:39,118 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 21:54:09] 2025-10-12 01:52:39,118 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 21:54:09] 2025-10-12 01:52:39,118 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 21:54:09] 2025-10-12 01:52:39,118 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 21:54:09] 2025-10-12 01:52:39,118 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 21:54:09] 2025-10-12 01:52:39,118 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 21:54:09] 2025-10-12 01:52:39,118 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 21:54:09] 2025-10-12 01:52:39,118 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 21:54:09] 2025-10-12 01:52:39,119 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 21:54:09] 2025-10-12 01:52:39,119 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 21:54:09] 2025-10-12 01:52:39,119 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 21:54:09] 2025-10-12 01:52:39,119 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 21:54:09] 2025-10-12 01:52:39,119 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 21:54:09] 2025-10-12 01:52:39,119 | INFO     | job 6838634507 has completed (purged errors)
[2025-10-11 21:54:09] 2025-10-12 01:52:39,119 | INFO     | overall cleanup function is called
[2025-10-11 21:54:09] 2025-10-12 01:52:40,129 | INFO     | --- collectZombieJob: --- 10, [2425368]
[2025-10-11 21:54:09] 2025-10-12 01:52:40,129 | INFO     | zombie collector waiting for pid 2425368
[2025-10-11 21:54:09] 2025-10-12 01:52:40,130 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 21:54:09] 2025-10-12 01:52:40,130 | INFO     | collected zombie processes
[2025-10-11 21:54:09] 2025-10-12 01:52:40,130 | INFO     | will attempt to kill all subprocesses of pid=2425368
[2025-10-11 21:54:09] 2025-10-12 01:52:40,544 | INFO     | process IDs to be killed: [2425368] (in reverse order)
[2025-10-11 21:54:09] 2025-10-12 01:52:40,659 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 21:54:09] 2025-10-12 01:52:40,659 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 21:54:09] 2025-10-12 01:52:40,672 | INFO     | did not find any defunct processes belonging to 2425368
[2025-10-11 21:54:09] 2025-10-12 01:52:40,684 | INFO     | did not find any defunct processes belonging to 2425368
[2025-10-11 21:54:09] 2025-10-12 01:52:40,685 | INFO     | ready for new job
[2025-10-11 21:54:09] 2025-10-12 01:52:40,685 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 21:54:09] 2025-10-12 01:52:40,687 | INFO     | ***************************************
[2025-10-11 21:54:09] 2025-10-12 01:52:40,687 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 21:54:09] 2025-10-12 01:52:40,687 | INFO     | ***************************************
[2025-10-11 21:54:09] 2025-10-12 01:52:40,688 | INFO     | 
[2025-10-11 21:54:09] 2025-10-12 01:52:40,691 | INFO     | architecture information:
[2025-10-11 21:54:09] 2025-10-12 01:52:40,692 | INFO     | executing command: cat /etc/os-release
[2025-10-11 21:54:09] 2025-10-12 01:52:40,855 | INFO     | cat /etc/os-release:
[2025-10-11 21:54:09] NAME="CentOS Linux"
[2025-10-11 21:54:09] VERSION="7 (Core)"
[2025-10-11 21:54:09] ID="centos"
[2025-10-11 21:54:09] ID_LIKE="rhel fedora"
[2025-10-11 21:54:09] VERSION_ID="7"
[2025-10-11 21:54:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 21:54:09] ANSI_COLOR="0;31"
[2025-10-11 21:54:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 21:54:09] HOME_URL="https://www.centos.org/"
[2025-10-11 21:54:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 21:54:09] 
[2025-10-11 21:54:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 21:54:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 21:54:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 21:54:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 21:54:09] 
[2025-10-11 21:54:09] 2025-10-12 01:52:40,855 | INFO     | ***************************************
[2025-10-11 21:54:09] 2025-10-12 01:52:41,358 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-11 21:54:09] 2025-10-12 01:52:41,464 | INFO     | sufficient remaining disk space (85298511872 B)
[2025-10-11 21:54:09] 2025-10-12 01:52:41,464 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 21:54:09] 2025-10-12 01:52:41,465 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 21:54:09] 2025-10-12 01:52:41,465 | INFO     | update_server=False
[2025-10-11 21:54:09] 2025-10-12 01:52:41,465 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 21:54:09] 2025-10-12 01:52:41,465 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 21:54:09] 2025-10-12 01:52:41,480 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 21:54:09] 2025-10-12 01:52:41,480 | INFO     | aborting loop
[2025-10-11 21:54:09] 2025-10-12 01:52:41,906 | INFO     | all data control threads have been joined
[2025-10-11 21:54:09] 2025-10-12 01:52:42,334 | INFO     | all job control threads have been joined
[2025-10-11 21:54:09] 2025-10-12 01:52:42,424 | INFO     | all payload control threads have been joined
[2025-10-11 21:54:09] 2025-10-12 01:52:42,470 | INFO     | [job] retrieve thread has finished
[2025-10-11 21:54:09] 2025-10-12 01:52:42,485 | INFO     | [job] job monitor thread has finished
[2025-10-11 21:54:09] 2025-10-12 01:52:42,504 | INFO     | [payload] validate_post thread has finished
[2025-10-11 21:54:09] 2025-10-12 01:52:42,603 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 21:54:09] 2025-10-12 01:52:42,804 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 21:54:09] 2025-10-12 01:52:42,911 | INFO     | [data] control thread has finished
[2025-10-11 21:54:09] 2025-10-12 01:52:42,921 | INFO     | [data] copytool_in thread has finished
[2025-10-11 21:54:09] 2025-10-12 01:52:43,013 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 21:54:09] 2025-10-12 01:52:43,022 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 21:54:09] 2025-10-12 01:52:43,044 | INFO     | [payload] failed_post thread has finished
[2025-10-11 21:54:09] 2025-10-12 01:52:43,196 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 21:54:09] 2025-10-12 01:52:43,340 | INFO     | [job] control thread has finished
[2025-10-11 21:54:09] 2025-10-12 01:52:43,430 | INFO     | [payload] control thread has finished
[2025-10-11 21:54:09] 2025-10-12 01:52:43,585 | INFO     | [job] validate thread has finished
[2025-10-11 21:54:09] 2025-10-12 01:52:44,115 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 21:54:09] 2025-10-12 01:52:44,813 | INFO     | [data] copytool_out thread has finished
[2025-10-11 21:54:09] 2025-10-12 01:52:45,121 | INFO     | [job] queue monitor thread has finished
[2025-10-11 21:54:09] 2025-10-12 01:52:45,477 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 21:54:09] 2025-10-12 01:53:12,281 | INFO     | PID=2418752 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 21:54:09] 2025-10-12 01:53:12,281 | INFO     | .. there are 11 such processes running
[2025-10-11 21:54:09] 2025-10-12 01:53:12,282 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 21:54:09] 2025-10-12 01:53:12,282 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 21:54:09] 2025-10-12 01:53:12,282 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 21:54:09] 2025-10-12 01:53:14,108 [wrapper] supervise_pilot (15 min periods counter: 13)
[2025-10-11 21:54:09] 2025-10-12 01:53:40,040 | INFO     | [monitor] cgroup control has ended
[2025-10-11 21:54:09] 2025-10-12 01:53:42,053 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140238805727040)>', '<ExcThread(monitor, started 140237770573568)>']
[2025-10-11 21:54:09] 2025-10-12 01:53:42,469 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 21:54:09] 2025-10-12 01:53:42,469 | INFO     | [monitor] control thread has ended
[2025-10-11 21:54:09] 2025-10-12 01:53:47,079 | INFO     | all workflow threads have been joined
[2025-10-11 21:54:09] 2025-10-12 01:53:47,079 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 21:54:09] 2025-10-12 01:53:47,079 | INFO     | traces error code: 0
[2025-10-11 21:54:09] 2025-10-12 01:53:47,080 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 21:54:09] 2025-10-12 01:53:47,595 [wrapper] ==== pilot stdout END ====
[2025-10-11 21:54:09] 2025-10-12 01:53:47,631 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 21:54:09] 2025-10-12 01:53:47,676 [wrapper] pilotpid: 2418752
[2025-10-11 21:54:09] 2025-10-12 01:53:47,735 [wrapper] Pilot exit status: 0
[2025-10-11 21:54:09] 2025-10-12 01:53:47,931 [wrapper] pandaids: 6838634507
[2025-10-11 21:54:09] 2025-10-12 01:53:48,808 [wrapper] cleanup supervisor_pilot 2714005 2418753
[2025-10-11 21:54:09] 2025-10-12 01:53:48,834 [wrapper] Test setup, not cleaning
[2025-10-11 21:54:09] 2025-10-12 01:53:48,852 [wrapper] apfmon messages muted
[2025-10-11 21:54:09] 2025-10-12 01:53:48,886 [wrapper] ==== wrapper stdout END ====
[2025-10-11 21:54:09] 2025-10-12 01:53:48,929 [wrapper] ==== wrapper stderr END ====
[2025-10-11 21:54:09]  *** Error codes and diagnostics ***
[2025-10-11 21:54:09]     "exeErrorCode": 0,
[2025-10-11 21:54:09]     "exeErrorDiag": "",
[2025-10-11 21:54:09]     "pilotErrorCode": 0,
[2025-10-11 21:54:09]     "pilotErrorDiag": "",
[2025-10-11 21:54:09]  *** Listing of results directory ***
[2025-10-11 21:54:09] total 406512
[2025-10-11 21:54:09] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 13:18 pilot3.tar.gz
[2025-10-11 21:54:09] -rwx------. 1 boincer umatlas     36292 Oct 11 13:23 runpilot2-wrapper.sh
[2025-10-11 21:54:09] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 13:23 queuedata.json
[2025-10-11 21:54:09] -rw-r--r--. 1 boincer umatlas       100 Oct 11 18:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 21:54:09] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 18:52 run_atlas
[2025-10-11 21:54:09] -rw-r--r--. 1 boincer umatlas       105 Oct 11 18:52 job.xml
[2025-10-11 21:54:09] -rw-r--r--. 2 boincer umatlas 219242003 Oct 11 18:52 EVNT.46676267._002485.pool.root.1
[2025-10-11 21:54:09] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 18:52 start_atlas.sh
[2025-10-11 21:54:09] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 18:52 shared
[2025-10-11 21:54:09] -rw-r--r--. 2 boincer umatlas    569678 Oct 11 18:52 input.tar.gz
[2025-10-11 21:54:09] -rw-r--r--. 1 boincer umatlas         0 Oct 11 18:52 boinc_lockfile
[2025-10-11 21:54:09] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 18:52 pandaJob.out
[2025-10-11 21:54:09] -rw-------. 1 boincer umatlas    975520 Oct 11 18:53 agis_schedconf.cvmfs.json
[2025-10-11 21:54:09] -rw-------. 1 boincer umatlas   1560580 Oct 11 18:53 agis_ddmendpoints.agis.ALL.json
[2025-10-11 21:54:09] drwx------. 5 boincer umatlas      4096 Oct 11 18:53 pilot3
[2025-10-11 21:54:09] -rw-r--r--. 1 boincer umatlas      6899 Oct 11 21:48 init_data.xml
[2025-10-11 21:54:09] -rw-------. 1 boincer umatlas 189393746 Oct 11 21:50 HITS.46676269._061857.pool.root.1
[2025-10-11 21:54:09] -rw-r--r--. 1 boincer umatlas       530 Oct 11 21:50 boinc_task_state.xml
[2025-10-11 21:54:09] -rw-------. 1 boincer umatlas      1036 Oct 11 21:52 memory_monitor_summary.json
[2025-10-11 21:54:09] -rw-------. 1 boincer umatlas    407930 Oct 11 21:52 log.46676269._061857.job.log.tgz.1
[2025-10-11 21:54:09] -rw-------. 1 boincer umatlas      7786 Oct 11 21:52 heartbeat.json
[2025-10-11 21:54:09] -rw-------. 1 boincer umatlas        95 Oct 11 21:53 pilot_heartbeat.json
[2025-10-11 21:54:09] -rw-------. 1 boincer umatlas      4824 Oct 11 21:53 pilotlog.txt
[2025-10-11 21:54:09] -rw-------. 1 boincer umatlas   1460825 Oct 11 21:53 log.46676269._061857.job.log.1
[2025-10-11 21:54:09] -rw-------. 1 boincer umatlas       357 Oct 11 21:53 output.list
[2025-10-11 21:54:09] -rw-r--r--. 1 boincer umatlas       620 Oct 11 21:53 runtime_log
[2025-10-11 21:54:09] -rw-------. 1 boincer umatlas   1884160 Oct 11 21:53 result.tar.gz
[2025-10-11 21:54:09] -rw-r--r--. 1 boincer umatlas      8704 Oct 11 21:53 runtime_log.err
[2025-10-11 21:54:09] -rw-------. 1 boincer umatlas       654 Oct 11 21:53 axUNDmyUsR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQ4gNDmzHVHXm.diag
[2025-10-11 21:54:09] -rw-r--r--. 1 boincer umatlas        27 Oct 11 21:53 wrapper_checkpoint.txt
[2025-10-11 21:54:09] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 21:54 boinc_mmap_file
[2025-10-11 21:54:09] -rw-r--r--. 1 boincer umatlas     20993 Oct 11 21:54 stderr.txt
[2025-10-11 21:54:09] HITS file was successfully produced:
[2025-10-11 21:54:09] -rw-------. 1 boincer umatlas 189393746 Oct 11 21:50 shared/HITS.pool.root.1
[2025-10-11 21:54:09]  *** Contents of shared directory: ***
[2025-10-11 21:54:09] total 401480
[2025-10-11 21:54:09] -rw-r--r--. 2 boincer umatlas 219242003 Oct 11 18:52 ATLAS.root_0
[2025-10-11 21:54:09] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 18:52 start_atlas.sh
[2025-10-11 21:54:09] -rw-r--r--. 2 boincer umatlas    569678 Oct 11 18:52 input.tar.gz
[2025-10-11 21:54:09] -rw-------. 1 boincer umatlas 189393746 Oct 11 21:50 HITS.pool.root.1
[2025-10-11 21:54:09] -rw-------. 1 boincer umatlas   1884160 Oct 11 21:53 result.tar.gz
21:54:11 (2413798): run_atlas exited; CPU time 34309.275316
21:54:11 (2413798): called boinc_finish(0)

</stderr_txt>
]]>

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