Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:24:15 (15499): wrapper (7.7.26015): starting
18:24:15 (15499): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 18:24:15] Arguments: --nthreads 8
[2025-10-11 18:24:15] Threads: 8
[2025-10-11 18:24:15] Checking for CVMFS
[2025-10-11 18:24:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 18:24:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 18:24:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 18:24:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 18:24:15] 2.11.2.0 2791 193197 78032 151599 2 56 11945692 20275201 1 130560 1 67814819 99.976 8618690 24230 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 18:24:15] CVMFS is ok
[2025-10-11 18:24:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 18:24:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 18:24:15] Further information can be found at the LHC@home message board.
[2025-10-11 18:24:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 18:24:15] Checking for apptainer binary...
[2025-10-11 18:24:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 18:24:15] Running /usr/bin/apptainer --version
[2025-10-11 18:24:16] apptainer version 1.3.2-1.el7
[2025-10-11 18:24:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 18:24:17] c-204-3.aglt2.org
[2025-10-11 18:24:17] apptainer works
[2025-10-11 18:24:17] Set ATHENA_PROC_NUMBER=8
[2025-10-11 18:24:17] Set ATHENA_CORE_NUMBER=8
[2025-10-11 18:24:17] Starting ATLAS job with PandaID=6838634321
[2025-10-11 18:24:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 20:31:52]  *** The last 200 lines of the pilot log: ***
[2025-10-11 20:31:52] 2025-10-12 00:30:48,874 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 20:31:52] 2025-10-12 00:30:48,875 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 20:31:52] 2025-10-12 00:30:48,875 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 20:31:52] 2025-10-12 00:30:48,875 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 20:31:52] 2025-10-12 00:30:48,878 | INFO     | fitting pss+swap vs Time
[2025-10-11 20:31:52] 2025-10-12 00:30:48,879 | INFO     | sum of square deviations: 591173875.0
[2025-10-11 20:31:52] 2025-10-12 00:30:48,880 | INFO     | sum of deviations: -12892119359.000002
[2025-10-11 20:31:52] 2025-10-12 00:30:48,880 | INFO     | mean x: 1760225257.5
[2025-10-11 20:31:52] 2025-10-12 00:30:48,880 | INFO     | mean y: 2533109.4838709678
[2025-10-11 20:31:52] 2025-10-12 00:30:48,880 | INFO     | -- intersect: 38388928513.74039
[2025-10-11 20:31:52] 2025-10-12 00:30:48,880 | INFO     | intersect: 38388928513.74039
[2025-10-11 20:31:52] 2025-10-12 00:30:48,881 | INFO     | chi2: 2.5198363017438323
[2025-10-11 20:31:52] 2025-10-12 00:30:48,881 | INFO     | sum of square deviations: 522502820.0
[2025-10-11 20:31:52] 2025-10-12 00:30:48,882 | INFO     | sum of deviations: -3295191024.999993
[2025-10-11 20:31:52] 2025-10-12 00:30:48,882 | INFO     | mean x: 1760225105.0
[2025-10-11 20:31:52] 2025-10-12 00:30:48,882 | INFO     | mean y: 2553803.8571428573
[2025-10-11 20:31:52] 2025-10-12 00:30:48,882 | INFO     | -- intersect: 11103504355.618128
[2025-10-11 20:31:52] 2025-10-12 00:30:48,882 | INFO     | intersect: 11103504355.618128
[2025-10-11 20:31:52] 2025-10-12 00:30:48,883 | INFO     | chi2: 1.6806148739329139
[2025-10-11 20:31:52] 2025-10-12 00:30:48,883 | INFO     | current chi2=1.6806148739329139 (change=33.304601065955836 %)
[2025-10-11 20:31:52] 2025-10-12 00:30:48,883 | INFO     | sum of square deviations: 459366752.5
[2025-10-11 20:31:52] 2025-10-12 00:30:48,884 | INFO     | sum of deviations: -2404431753.9999986
[2025-10-11 20:31:52] 2025-10-12 00:30:48,884 | INFO     | mean x: 1760224952.5
[2025-10-11 20:31:52] 2025-10-12 00:30:48,884 | INFO     | mean y: 2555956.807017544
[2025-10-11 20:31:52] 2025-10-12 00:30:48,884 | INFO     | -- intersect: 9215980191.235346
[2025-10-11 20:31:52] 2025-10-12 00:30:48,884 | INFO     | intersect: 9215980191.235346
[2025-10-11 20:31:52] 2025-10-12 00:30:48,885 | INFO     | chi2: 1.6827145647089752
[2025-10-11 20:31:52] 2025-10-12 00:30:48,885 | INFO     | current chi2=1.6827145647089752 (change=-0.12493586773677026 %)
[2025-10-11 20:31:52] 2025-10-12 00:30:48,885 | INFO     | right removable region: 113
[2025-10-11 20:31:52] 2025-10-12 00:30:48,885 | INFO     | sum of square deviations: 522502820.0
[2025-10-11 20:31:52] 2025-10-12 00:30:48,886 | INFO     | sum of deviations: -31717186741.000004
[2025-10-11 20:31:52] 2025-10-12 00:30:48,886 | INFO     | mean x: 1760225410.0
[2025-10-11 20:31:52] 2025-10-12 00:30:48,886 | INFO     | mean y: 2574151.100840336
[2025-10-11 20:31:52] 2025-10-12 00:30:48,886 | INFO     | -- intersect: 106852520023.59068
[2025-10-11 20:31:52] 2025-10-12 00:30:48,886 | INFO     | intersect: 106852520023.59068
[2025-10-11 20:31:52] 2025-10-12 00:30:48,886 | INFO     | chi2: 1.0358865205792687
[2025-10-11 20:31:52] 2025-10-12 00:30:48,887 | INFO     | current chi2=1.0358865205792687 (change=58.8907215971771 %)
[2025-10-11 20:31:52] 2025-10-12 00:30:48,887 | INFO     | sum of square deviations: 459366752.5
[2025-10-11 20:31:52] 2025-10-12 00:30:48,887 | INFO     | sum of deviations: -32471324708.5
[2025-10-11 20:31:52] 2025-10-12 00:30:48,888 | INFO     | mean x: 1760225562.5
[2025-10-11 20:31:52] 2025-10-12 00:30:48,888 | INFO     | mean y: 2575844.236842105
[2025-10-11 20:31:52] 2025-10-12 00:30:48,888 | INFO     | -- intersect: 124427897200.37823
[2025-10-11 20:31:52] 2025-10-12 00:30:48,888 | INFO     | intersect: 124427897200.37823
[2025-10-11 20:31:52] 2025-10-12 00:30:48,888 | INFO     | chi2: 0.990105493714019
[2025-10-11 20:31:52] 2025-10-12 00:30:48,888 | INFO     | current chi2=0.990105493714019 (change=4.4195021323039185 %)
[2025-10-11 20:31:52] 2025-10-12 00:30:48,888 | INFO     | left removable region: 20
[2025-10-11 20:31:52] 2025-10-12 00:30:48,889 | INFO     | sum of square deviations: 249388862.0
[2025-10-11 20:31:52] 2025-10-12 00:30:48,889 | INFO     | sum of deviations: -16053194869.0
[2025-10-11 20:31:52] 2025-10-12 00:30:48,889 | INFO     | mean x: 1760225532.0
[2025-10-11 20:31:52] 2025-10-12 00:30:48,889 | INFO     | mean y: 2589034.88172043
[2025-10-11 20:31:52] 2025-10-12 00:30:48,889 | INFO     | -- intersect: 113308545251.10278
[2025-10-11 20:31:52] 2025-10-12 00:30:48,890 | INFO     | intersect: 113308545251.10278
[2025-10-11 20:31:52] 2025-10-12 00:30:48,890 | INFO     | chi2: 0.09201481483991227
[2025-10-11 20:31:52] 2025-10-12 00:30:48,890 | INFO     | -- intersect: 113308545251.10278
[2025-10-11 20:31:52] 2025-10-12 00:30:48,890 | INFO     | current memory leak: -64.37 B/s (using 93 data points, chi2=0.09)
[2025-10-11 20:31:52] 2025-10-12 00:30:48,890 | INFO     | could have reported an average CPU frequency of 1985 MHz (8 samples)
[2025-10-11 20:31:52] 2025-10-12 00:30:48,891 | INFO     | ..............................
[2025-10-11 20:31:52] 2025-10-12 00:30:48,891 | INFO     | . Timing measurements:
[2025-10-11 20:31:52] 2025-10-12 00:30:48,891 | INFO     | . get job = 0 s
[2025-10-11 20:31:52] 2025-10-12 00:30:48,891 | INFO     | . initial setup = 2 s
[2025-10-11 20:31:52] 2025-10-12 00:30:48,891 | INFO     | . payload setup = 8 s
[2025-10-11 20:31:52] 2025-10-12 00:30:48,891 | INFO     | . stage-in = 0 s
[2025-10-11 20:31:52] 2025-10-12 00:30:48,891 | INFO     | . payload execution = 7534 s
[2025-10-11 20:31:52] 2025-10-12 00:30:48,891 | INFO     | . stage-out = 0 s
[2025-10-11 20:31:52] 2025-10-12 00:30:48,892 | INFO     | . log creation = 0 s
[2025-10-11 20:31:52] 2025-10-12 00:30:48,892 | INFO     | ..............................
[2025-10-11 20:31:52] 2025-10-12 00:30:48,988 | INFO     | 
[2025-10-11 20:31:52] 2025-10-12 00:30:48,988 | INFO     | job summary report
[2025-10-11 20:31:52] 2025-10-12 00:30:48,988 | INFO     | --------------------------------------------------
[2025-10-11 20:31:52] 2025-10-12 00:30:48,989 | INFO     | PanDA job id: 6838634321
[2025-10-11 20:31:52] 2025-10-12 00:30:48,989 | INFO     | task id: 46676269
[2025-10-11 20:31:52] 2025-10-12 00:30:48,989 | INFO     | errors: (none)
[2025-10-11 20:31:52] 2025-10-12 00:30:48,989 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 20:31:52] 2025-10-12 00:30:48,989 | INFO     | pilot state: finished 
[2025-10-11 20:31:52] 2025-10-12 00:30:48,989 | INFO     | transexitcode: 0
[2025-10-11 20:31:52] 2025-10-12 00:30:48,990 | INFO     | exeerrorcode: 0
[2025-10-11 20:31:52] 2025-10-12 00:30:48,990 | INFO     | exeerrordiag: 
[2025-10-11 20:31:52] 2025-10-12 00:30:48,990 | INFO     | exitcode: 0
[2025-10-11 20:31:52] 2025-10-12 00:30:48,990 | INFO     | exitmsg: OK
[2025-10-11 20:31:52] 2025-10-12 00:30:48,990 | INFO     | cpuconsumptiontime: 55668 s
[2025-10-11 20:31:52] 2025-10-12 00:30:48,990 | INFO     | nevents: 400
[2025-10-11 20:31:52] 2025-10-12 00:30:48,991 | INFO     | neventsw: 0
[2025-10-11 20:31:52] 2025-10-12 00:30:48,991 | INFO     | pid: 26561
[2025-10-11 20:31:52] 2025-10-12 00:30:48,991 | INFO     | pgrp: 26561
[2025-10-11 20:31:52] 2025-10-12 00:30:48,991 | INFO     | corecount: 8
[2025-10-11 20:31:52] 2025-10-12 00:30:48,991 | INFO     | event service: False
[2025-10-11 20:31:52] 2025-10-12 00:30:48,991 | INFO     | sizes: {0: 2348857, 6: 2349119, 11: 2349147, 7547: 2376692, 7548: 2385690, 7549: 2385746, 7556: 2386068}
[2025-10-11 20:31:52] 2025-10-12 00:30:48,992 | INFO     | --------------------------------------------------
[2025-10-11 20:31:52] 2025-10-12 00:30:48,992 | INFO     | 
[2025-10-11 20:31:52] 2025-10-12 00:30:48,992 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 20:31:52] 2025-10-12 00:30:49,020 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 20:31:52] 2025-10-12 00:30:49,021 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 20:31:52] 2025-10-12 00:30:49,021 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 20:31:52] 2025-10-12 00:30:49,021 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 20:31:52] 2025-10-12 00:30:49,022 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 20:31:52] 2025-10-12 00:30:49,022 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 20:31:52] 2025-10-12 00:30:49,022 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 20:31:52] 2025-10-12 00:30:49,022 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 20:31:52] 2025-10-12 00:30:49,022 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 20:31:52] 2025-10-12 00:30:49,022 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 20:31:52] 2025-10-12 00:30:49,023 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 20:31:52] 2025-10-12 00:30:49,023 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 20:31:52] 2025-10-12 00:30:49,023 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 20:31:52] 2025-10-12 00:30:49,023 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 20:31:52] 2025-10-12 00:30:49,024 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 20:31:52] 2025-10-12 00:30:49,024 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 20:31:52] 2025-10-12 00:30:49,024 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 20:31:52] 2025-10-12 00:30:49,024 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 20:31:52] 2025-10-12 00:30:49,024 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 20:31:52] 2025-10-12 00:30:49,025 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 20:31:52] 2025-10-12 00:30:49,025 | INFO     | job 6838634321 has completed (purged errors)
[2025-10-11 20:31:52] 2025-10-12 00:30:49,025 | INFO     | overall cleanup function is called
[2025-10-11 20:31:52] 2025-10-12 00:30:50,034 | INFO     | --- collectZombieJob: --- 10, [26561]
[2025-10-11 20:31:52] 2025-10-12 00:30:50,035 | INFO     | zombie collector waiting for pid 26561
[2025-10-11 20:31:52] 2025-10-12 00:30:50,035 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 20:31:52] 2025-10-12 00:30:50,036 | INFO     | collected zombie processes
[2025-10-11 20:31:52] 2025-10-12 00:30:50,036 | INFO     | will attempt to kill all subprocesses of pid=26561
[2025-10-11 20:31:52] 2025-10-12 00:30:50,130 | INFO     | process IDs to be killed: [26561] (in reverse order)
[2025-10-11 20:31:52] 2025-10-12 00:30:50,189 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 20:31:52] 2025-10-12 00:30:50,189 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 20:31:52] 2025-10-12 00:30:50,194 | INFO     | did not find any defunct processes belonging to 26561
[2025-10-11 20:31:52] 2025-10-12 00:30:50,196 | INFO     | did not find any defunct processes belonging to 26561
[2025-10-11 20:31:52] 2025-10-12 00:30:50,197 | INFO     | ready for new job
[2025-10-11 20:31:52] 2025-10-12 00:30:50,197 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 20:31:52] 2025-10-12 00:30:50,199 | INFO     | ***************************************
[2025-10-11 20:31:52] 2025-10-12 00:30:50,199 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 20:31:52] 2025-10-12 00:30:50,199 | INFO     | ***************************************
[2025-10-11 20:31:52] 2025-10-12 00:30:50,199 | INFO     | 
[2025-10-11 20:31:52] 2025-10-12 00:30:50,200 | INFO     | architecture information:
[2025-10-11 20:31:52] 2025-10-12 00:30:50,201 | INFO     | executing command: cat /etc/os-release
[2025-10-11 20:31:52] 2025-10-12 00:30:50,218 | INFO     | cat /etc/os-release:
[2025-10-11 20:31:52] NAME="CentOS Linux"
[2025-10-11 20:31:52] VERSION="7 (Core)"
[2025-10-11 20:31:52] ID="centos"
[2025-10-11 20:31:52] ID_LIKE="rhel fedora"
[2025-10-11 20:31:52] VERSION_ID="7"
[2025-10-11 20:31:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 20:31:52] ANSI_COLOR="0;31"
[2025-10-11 20:31:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 20:31:52] HOME_URL="https://www.centos.org/"
[2025-10-11 20:31:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 20:31:52] 
[2025-10-11 20:31:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 20:31:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 20:31:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 20:31:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 20:31:52] 
[2025-10-11 20:31:52] 2025-10-12 00:30:50,219 | INFO     | ***************************************
[2025-10-11 20:31:52] 2025-10-12 00:30:50,722 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 20:31:52] 2025-10-12 00:30:50,742 | INFO     | sufficient remaining disk space (18589155328 B)
[2025-10-11 20:31:52] 2025-10-12 00:30:50,742 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 20:31:52] 2025-10-12 00:30:50,743 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 20:31:52] 2025-10-12 00:30:50,743 | INFO     | update_server=False
[2025-10-11 20:31:52] 2025-10-12 00:30:50,743 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 20:31:52] 2025-10-12 00:30:50,743 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 20:31:52] 2025-10-12 00:30:50,768 | INFO     | all data control threads have been joined
[2025-10-11 20:31:52] 2025-10-12 00:30:51,470 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 20:31:52] 2025-10-12 00:30:51,611 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 20:31:52] 2025-10-12 00:30:51,612 | INFO     | aborting loop
[2025-10-11 20:31:52] 2025-10-12 00:30:51,745 | INFO     | [job] queue monitor thread has finished
[2025-10-11 20:31:52] 2025-10-12 00:30:51,748 | INFO     | [job] retrieve thread has finished
[2025-10-11 20:31:52] 2025-10-12 00:30:51,760 | INFO     | [data] copytool_in thread has finished
[2025-10-11 20:31:52] 2025-10-12 00:30:51,775 | INFO     | [data] control thread has finished
[2025-10-11 20:31:52] 2025-10-12 00:30:51,817 | INFO     | [payload] validate_post thread has finished
[2025-10-11 20:31:52] 2025-10-12 00:30:51,869 | INFO     | all payload control threads have been joined
[2025-10-11 20:31:52] 2025-10-12 00:30:51,997 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 20:31:52] 2025-10-12 00:30:52,192 | INFO     | all job control threads have been joined
[2025-10-11 20:31:52] 2025-10-12 00:30:52,530 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 20:31:52] 2025-10-12 00:30:52,616 | INFO     | [job] job monitor thread has finished
[2025-10-11 20:31:52] 2025-10-12 00:30:52,761 | INFO     | [job] validate thread has finished
[2025-10-11 20:31:52] 2025-10-12 00:30:52,772 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 20:31:52] 2025-10-12 00:30:52,874 | INFO     | [payload] control thread has finished
[2025-10-11 20:31:52] 2025-10-12 00:30:52,924 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 20:31:52] 2025-10-12 00:30:52,947 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 20:31:52] 2025-10-12 00:30:53,023 | INFO     | [payload] failed_post thread has finished
[2025-10-11 20:31:52] 2025-10-12 00:30:53,196 | INFO     | [job] control thread has finished
[2025-10-11 20:31:52] 2025-10-12 00:30:53,471 | INFO     | [data] copytool_out thread has finished
[2025-10-11 20:31:52] 2025-10-12 00:30:56,003 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 20:31:52] 2025-10-12 00:31:21,273 | INFO     | PID=20081 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 20:31:52] 2025-10-12 00:31:21,273 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 20:31:52] 2025-10-12 00:31:21,273 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 20:31:52] 2025-10-12 00:31:21,273 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 20:31:52] 2025-10-12 00:31:47,266 | INFO     | [monitor] cgroup control has ended
[2025-10-11 20:31:52] 2025-10-12 00:31:47,338 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139740249147200)>', '<ExcThread(monitor, started 139739931842304)>']
[2025-10-11 20:31:52] 2025-10-12 00:31:47,397 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 20:31:52] 2025-10-12 00:31:47,397 | INFO     | [monitor] control thread has ended
[2025-10-11 20:31:52] 2025-10-12 00:31:52,364 | INFO     | all workflow threads have been joined
[2025-10-11 20:31:52] 2025-10-12 00:31:52,368 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 20:31:52] 2025-10-12 00:31:52,370 | INFO     | traces error code: 0
[2025-10-11 20:31:52] 2025-10-12 00:31:52,370 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 20:31:52] 2025-10-12 00:31:52,499 [wrapper] ==== pilot stdout END ====
[2025-10-11 20:31:52] 2025-10-12 00:31:52,504 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 20:31:52] 2025-10-12 00:31:52,508 [wrapper] pilotpid: 20081
[2025-10-11 20:31:52] 2025-10-12 00:31:52,513 [wrapper] Pilot exit status: 0
[2025-10-11 20:31:52] 2025-10-12 00:31:52,531 [wrapper] pandaids: 6838634321
[2025-10-11 20:31:52] 2025-10-12 00:31:52,583 [wrapper] cleanup supervisor_pilot 23842 20082
[2025-10-11 20:31:52] 2025-10-12 00:31:52,588 [wrapper] Test setup, not cleaning
[2025-10-11 20:31:52] 2025-10-12 00:31:52,593 [wrapper] apfmon messages muted
[2025-10-11 20:31:52] 2025-10-12 00:31:52,597 [wrapper] ==== wrapper stdout END ====
[2025-10-11 20:31:52] 2025-10-12 00:31:52,602 [wrapper] ==== wrapper stderr END ====
[2025-10-11 20:31:52]  *** Error codes and diagnostics ***
[2025-10-11 20:31:52]     "exeErrorCode": 0,
[2025-10-11 20:31:52]     "exeErrorDiag": "",
[2025-10-11 20:31:52]     "pilotErrorCode": 0,
[2025-10-11 20:31:52]     "pilotErrorDiag": "",
[2025-10-11 20:31:52]  *** Listing of results directory ***
[2025-10-11 20:31:52] total 411560
[2025-10-11 20:31:52] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 13:18 queuedata.json
[2025-10-11 20:31:52] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 13:18 pilot3.tar.gz
[2025-10-11 20:31:52] -rwx------ 1 boincer umatlas     36292 Oct 11 13:19 runpilot2-wrapper.sh
[2025-10-11 20:31:52] -rw-r--r-- 1 boincer umatlas       100 Oct 11 18:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 20:31:52] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 18:24 run_atlas
[2025-10-11 20:31:52] -rw-r--r-- 1 boincer umatlas       105 Oct 11 18:24 job.xml
[2025-10-11 20:31:52] -rw-r--r-- 2 boincer umatlas 220297452 Oct 11 18:24 EVNT.46676267._002477.pool.root.1
[2025-10-11 20:31:52] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 18:24 start_atlas.sh
[2025-10-11 20:31:52] drwxrwx--x 2 boincer umatlas      4096 Oct 11 18:24 shared
[2025-10-11 20:31:52] -rw-r--r-- 2 boincer umatlas    569677 Oct 11 18:24 input.tar.gz
[2025-10-11 20:31:52] -rw-r--r-- 1 boincer umatlas         0 Oct 11 18:24 boinc_lockfile
[2025-10-11 20:31:52] -rw-r--r-- 1 boincer umatlas      2550 Oct 11 18:24 pandaJob.out
[2025-10-11 20:31:52] -rw------- 1 boincer umatlas    975520 Oct 11 18:24 agis_schedconf.cvmfs.json
[2025-10-11 20:31:52] -rw------- 1 boincer umatlas   1560580 Oct 11 18:24 agis_ddmendpoints.agis.ALL.json
[2025-10-11 20:31:52] drwx------ 5 boincer umatlas      4096 Oct 11 18:24 pilot3
[2025-10-11 20:31:52] -rw-r--r-- 1 boincer umatlas      5909 Oct 11 20:27 init_data.xml
[2025-10-11 20:31:52] -rw------- 1 boincer umatlas 194334070 Oct 11 20:30 HITS.46676269._061671.pool.root.1
[2025-10-11 20:31:52] -rw-r--r-- 1 boincer umatlas       529 Oct 11 20:30 boinc_task_state.xml
[2025-10-11 20:31:52] -rw------- 1 boincer umatlas        95 Oct 11 20:30 pilot_heartbeat.json
[2025-10-11 20:31:52] -rw------- 1 boincer umatlas      1049 Oct 11 20:30 memory_monitor_summary.json
[2025-10-11 20:31:52] -rw------- 1 boincer umatlas    384130 Oct 11 20:30 log.46676269._061671.job.log.tgz.1
[2025-10-11 20:31:52] -rw------- 1 boincer umatlas      7850 Oct 11 20:30 heartbeat.json
[2025-10-11 20:31:52] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 20:31 boinc_mmap_file
[2025-10-11 20:31:52] -rw-r--r-- 1 boincer umatlas        27 Oct 11 20:31 wrapper_checkpoint.txt
[2025-10-11 20:31:52] -rw------- 1 boincer umatlas      4746 Oct 11 20:31 pilotlog.txt
[2025-10-11 20:31:52] -rw------- 1 boincer umatlas   1067039 Oct 11 20:31 log.46676269._061671.job.log.1
[2025-10-11 20:31:52] -rw------- 1 boincer umatlas       357 Oct 11 20:31 output.list
[2025-10-11 20:31:52] -rw-r--r-- 1 boincer umatlas       620 Oct 11 20:31 runtime_log
[2025-10-11 20:31:52] -rw------- 1 boincer umatlas   1474560 Oct 11 20:31 result.tar.gz
[2025-10-11 20:31:52] -rw-r--r-- 1 boincer umatlas      8698 Oct 11 20:31 runtime_log.err
[2025-10-11 20:31:52] -rw------- 1 boincer umatlas       658 Oct 11 20:31 kBcLDm4QsR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmPJSMDmrkIg5m.diag
[2025-10-11 20:31:52] -rw-r--r-- 1 boincer umatlas     20860 Oct 11 20:31 stderr.txt
[2025-10-11 20:31:52] HITS file was successfully produced:
[2025-10-11 20:31:52] -rw------- 1 boincer umatlas 194334070 Oct 11 20:30 shared/HITS.pool.root.1
[2025-10-11 20:31:52]  *** Contents of shared directory: ***
[2025-10-11 20:31:52] total 406936
[2025-10-11 20:31:52] -rw-r--r-- 2 boincer umatlas 220297452 Oct 11 18:24 ATLAS.root_0
[2025-10-11 20:31:52] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 18:24 start_atlas.sh
[2025-10-11 20:31:52] -rw-r--r-- 2 boincer umatlas    569677 Oct 11 18:24 input.tar.gz
[2025-10-11 20:31:52] -rw------- 1 boincer umatlas 194334070 Oct 11 20:30 HITS.pool.root.1
[2025-10-11 20:31:52] -rw------- 1 boincer umatlas   1474560 Oct 11 20:31 result.tar.gz
20:31:54 (15499): run_atlas exited; CPU time 55614.919110
20:31:54 (15499): called boinc_finish(0)

</stderr_txt>
]]>

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