Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:36:08 (3214533): wrapper (7.7.26015): starting
18:36:08 (3214533): wrapper: running run_atlas (--nthreads 11)
[2025-10-11 18:36:08] Arguments: --nthreads 11
[2025-10-11 18:36:08] Threads: 11
[2025-10-11 18:36:08] Checking for CVMFS
[2025-10-11 18:36:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 18:36:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 18:36:08] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 18:36:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 18:36:08] 2.13.2.0 4120630 128430 292512 151599 1 297 23073404 32935936 21658 16776704 0 93238171 99.674 82923033 29924 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 18:36:08] CVMFS is ok
[2025-10-11 18:36:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 18:36:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 18:36:08] Further information can be found at the LHC@home message board.
[2025-10-11 18:36:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 18:36:08] Checking for apptainer binary...
[2025-10-11 18:36:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 18:36:08] Running /usr/bin/apptainer --version
[2025-10-11 18:36:08] apptainer version 1.4.3-1.el9
[2025-10-11 18:36:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 18:36:08] c-5-4.aglt2.org
[2025-10-11 18:36:08] apptainer works
[2025-10-11 18:36:08] Set ATHENA_PROC_NUMBER=11
[2025-10-11 18:36:08] Set ATHENA_CORE_NUMBER=11
[2025-10-11 18:36:08] Starting ATLAS job with PandaID=6838634397
[2025-10-11 18:36:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 20:05:34]  *** The last 200 lines of the pilot log: ***
[2025-10-11 20:05:34]  protocol_id=None
[2025-10-11 20:05:34]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-11 20:05:34]  replicas=None
[2025-10-11 20:05:34]  scope=mc23_13p6TeV
[2025-10-11 20:05:34]  status=None
[2025-10-11 20:05:34]  status_code=0
[2025-10-11 20:05:34]  storage_token=
[2025-10-11 20:05:34]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6838634397/log.46676269._061747.job.log.tgz.1
[2025-10-11 20:05:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3b/6e/log.46676269._061747.job.log.tgz.1
[2025-10-11 20:05:34]  workdir=None
[2025-10-11 20:05:34] ]
[2025-10-11 20:05:34] 2025-10-12 00:04:45,355 | INFO     | transferring file log.46676269._061747.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6838634397/log.46676269._061747.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 20:05:34] 2025-10-12 00:04:45,355 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6838634397/log.46676269._061747.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._061747.job
[2025-10-11 20:05:34] 2025-10-12 00:04:45,374 | INFO     | adding to output.list: log.46676269._061747.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3b/6e/log.46676269._061747.job.log.tg
[2025-10-11 20:05:34] 2025-10-12 00:04:45,375 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 20:05:34] 2025-10-12 00:04:45,375 | INFO     | summary of transferred files:
[2025-10-11 20:05:34] 2025-10-12 00:04:45,375 | INFO     |  -- lfn=log.46676269._061747.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 20:05:34] 2025-10-12 00:04:45,376 | INFO     | stage-out finished correctly
[2025-10-11 20:05:34] 2025-10-12 00:04:45,982 | INFO     | time since job start (5305s) is within the limit (172800.0s)
[2025-10-11 20:05:34] 2025-10-12 00:04:46,774 | INFO     | monitor loop #382: job 0:6838634397 is in state 'finished'
[2025-10-11 20:05:34] 2025-10-12 00:04:46,774 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 20:05:34] 2025-10-12 00:04:47,414 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 20:05:34] 2025-10-12 00:04:47,514 | INFO     | job 6838634397 has state=finished
[2025-10-11 20:05:34] 2025-10-12 00:04:47,514 | INFO     | preparing for final server update for job 6838634397 in state='finished'
[2025-10-11 20:05:34] 2025-10-12 00:04:47,515 | INFO     | this job has now completed (state=finished)
[2025-10-11 20:05:34] 2025-10-12 00:04:47,515 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 20:05:34] 2025-10-12 00:04:47,515 | INFO     | log transfer has been attempted: DONE
[2025-10-11 20:05:34] 2025-10-12 00:04:47,515 | INFO     | job 6838634397 has finished - writing final server update
[2025-10-11 20:05:34] 2025-10-12 00:04:47,515 | INFO     | total number of processed events: 400 (read)
[2025-10-11 20:05:34] 2025-10-12 00:04:47,516 | INFO     | executing command: lscpu
[2025-10-11 20:05:34] 2025-10-12 00:04:47,567 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 20:05:34] 2025-10-12 00:04:47,988 | INFO     | time since job start (5307s) is within the limit (172800.0s)
[2025-10-11 20:05:34] 2025-10-12 00:04:49,277 | INFO     | monitor loop #383: job 0:6838634397 is in state 'finished'
[2025-10-11 20:05:34] 2025-10-12 00:04:49,277 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 20:05:34] 2025-10-12 00:04:49,993 | INFO     | time since job start (5309s) is within the limit (172800.0s)
[2025-10-11 20:05:34] 2025-10-12 00:04:51,325 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 20:05:34] 2025-10-12 00:04:51,343 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2779.9777000000004
[2025-10-11 20:05:34] 2025-10-12 00:04:51,350 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838634397/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 20:05:34] 2025-10-12 00:04:51,351 | INFO     | extracted standard info from prmon json
[2025-10-11 20:05:34] 2025-10-12 00:04:51,351 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 20:05:34] 2025-10-12 00:04:51,351 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 20:05:34] 2025-10-12 00:04:51,352 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 20:05:34] 2025-10-12 00:04:51,352 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 20:05:34] 2025-10-12 00:04:51,354 | INFO     | fitting pss+swap vs Time
[2025-10-11 20:05:34] 2025-10-12 00:04:51,354 | INFO     | sum of square deviations: 158737860.0
[2025-10-11 20:05:34] 2025-10-12 00:04:51,355 | INFO     | sum of deviations: -16040754468.0
[2025-10-11 20:05:34] 2025-10-12 00:04:51,355 | INFO     | mean x: 1760224919.5
[2025-10-11 20:05:34] 2025-10-12 00:04:51,355 | INFO     | mean y: 2476469.4
[2025-10-11 20:05:34] 2025-10-12 00:04:51,355 | INFO     | -- intersect: 177876461554.9654
[2025-10-11 20:05:34] 2025-10-12 00:04:51,355 | INFO     | intersect: 177876461554.9654
[2025-10-11 20:05:34] 2025-10-12 00:04:51,356 | INFO     | chi2: 0.209892143694263
[2025-10-11 20:05:34] 2025-10-12 00:04:51,356 | INFO     | -- intersect: 177876461554.9654
[2025-10-11 20:05:34] 2025-10-12 00:04:51,356 | INFO     | current memory leak: -101.05 B/s (using 80 data points, chi2=0.21)
[2025-10-11 20:05:34] 2025-10-12 00:04:51,356 | INFO     | could have reported an average CPU frequency of 2713 MHz (6 samples)
[2025-10-11 20:05:34] 2025-10-12 00:04:51,357 | INFO     | ..............................
[2025-10-11 20:05:34] 2025-10-12 00:04:51,357 | INFO     | . Timing measurements:
[2025-10-11 20:05:34] 2025-10-12 00:04:51,357 | INFO     | . get job = 0 s
[2025-10-11 20:05:34] 2025-10-12 00:04:51,357 | INFO     | . initial setup = 2 s
[2025-10-11 20:05:34] 2025-10-12 00:04:51,357 | INFO     | . payload setup = 5 s
[2025-10-11 20:05:34] 2025-10-12 00:04:51,357 | INFO     | . stage-in = 0 s
[2025-10-11 20:05:34] 2025-10-12 00:04:51,357 | INFO     | . payload execution = 5279 s
[2025-10-11 20:05:34] 2025-10-12 00:04:51,357 | INFO     | . stage-out = 0 s
[2025-10-11 20:05:34] 2025-10-12 00:04:51,357 | INFO     | . log creation = 0 s
[2025-10-11 20:05:34] 2025-10-12 00:04:51,357 | INFO     | ..............................
[2025-10-11 20:05:34] 2025-10-12 00:04:51,462 | INFO     | 
[2025-10-11 20:05:34] 2025-10-12 00:04:51,462 | INFO     | job summary report
[2025-10-11 20:05:34] 2025-10-12 00:04:51,462 | INFO     | --------------------------------------------------
[2025-10-11 20:05:34] 2025-10-12 00:04:51,462 | INFO     | PanDA job id: 6838634397
[2025-10-11 20:05:34] 2025-10-12 00:04:51,462 | INFO     | task id: 46676269
[2025-10-11 20:05:34] 2025-10-12 00:04:51,463 | INFO     | errors: (none)
[2025-10-11 20:05:34] 2025-10-12 00:04:51,463 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 20:05:34] 2025-10-12 00:04:51,463 | INFO     | pilot state: finished 
[2025-10-11 20:05:34] 2025-10-12 00:04:51,463 | INFO     | transexitcode: 0
[2025-10-11 20:05:34] 2025-10-12 00:04:51,463 | INFO     | exeerrorcode: 0
[2025-10-11 20:05:34] 2025-10-12 00:04:51,463 | INFO     | exeerrordiag: 
[2025-10-11 20:05:34] 2025-10-12 00:04:51,463 | INFO     | exitcode: 0
[2025-10-11 20:05:34] 2025-10-12 00:04:51,463 | INFO     | exitmsg: OK
[2025-10-11 20:05:34] 2025-10-12 00:04:51,463 | INFO     | cpuconsumptiontime: 45956 s
[2025-10-11 20:05:34] 2025-10-12 00:04:51,464 | INFO     | nevents: 400
[2025-10-11 20:05:34] 2025-10-12 00:04:51,464 | INFO     | neventsw: 0
[2025-10-11 20:05:34] 2025-10-12 00:04:51,464 | INFO     | pid: 3224824
[2025-10-11 20:05:34] 2025-10-12 00:04:51,464 | INFO     | pgrp: 3224824
[2025-10-11 20:05:34] 2025-10-12 00:04:51,464 | INFO     | corecount: 11
[2025-10-11 20:05:34] 2025-10-12 00:04:51,464 | INFO     | event service: False
[2025-10-11 20:05:34] 2025-10-12 00:04:51,464 | INFO     | sizes: {0: 2348680, 1: 2348879, 5: 2349141, 11: 2349197, 5288: 2375637, 5290: 2384635, 5292: 2384819, 5296: 2385013}
[2025-10-11 20:05:34] 2025-10-12 00:04:51,464 | INFO     | --------------------------------------------------
[2025-10-11 20:05:34] 2025-10-12 00:04:51,464 | INFO     | 
[2025-10-11 20:05:34] 2025-10-12 00:04:51,465 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 20:05:34] 2025-10-12 00:04:51,483 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 20:05:34] 2025-10-12 00:04:51,484 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 20:05:34] 2025-10-12 00:04:51,484 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 20:05:34] 2025-10-12 00:04:51,484 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 20:05:34] 2025-10-12 00:04:51,484 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 20:05:34] 2025-10-12 00:04:51,484 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 20:05:34] 2025-10-12 00:04:51,484 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 20:05:34] 2025-10-12 00:04:51,485 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 20:05:34] 2025-10-12 00:04:51,485 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 20:05:34] 2025-10-12 00:04:51,485 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 20:05:34] 2025-10-12 00:04:51,485 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 20:05:34] 2025-10-12 00:04:51,485 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 20:05:34] 2025-10-12 00:04:51,485 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 20:05:34] 2025-10-12 00:04:51,485 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 20:05:34] 2025-10-12 00:04:51,485 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 20:05:34] 2025-10-12 00:04:51,485 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 20:05:34] 2025-10-12 00:04:51,486 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 20:05:34] 2025-10-12 00:04:51,486 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 20:05:34] 2025-10-12 00:04:51,486 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 20:05:34] 2025-10-12 00:04:51,486 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 20:05:34] 2025-10-12 00:04:51,486 | INFO     | job 6838634397 has completed (purged errors)
[2025-10-11 20:05:34] 2025-10-12 00:04:51,486 | INFO     | overall cleanup function is called
[2025-10-11 20:05:34] 2025-10-12 00:04:52,490 | INFO     | --- collectZombieJob: --- 10, [3224824]
[2025-10-11 20:05:34] 2025-10-12 00:04:52,490 | INFO     | zombie collector waiting for pid 3224824
[2025-10-11 20:05:34] 2025-10-12 00:04:52,490 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 20:05:34] 2025-10-12 00:04:52,491 | INFO     | collected zombie processes
[2025-10-11 20:05:34] 2025-10-12 00:04:52,491 | INFO     | will attempt to kill all subprocesses of pid=3224824
[2025-10-11 20:05:34] 2025-10-12 00:04:52,848 | INFO     | process IDs to be killed: [3224824] (in reverse order)
[2025-10-11 20:05:34] 2025-10-12 00:04:52,961 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 20:05:34] 2025-10-12 00:04:52,962 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 20:05:34] 2025-10-12 00:04:52,975 | INFO     | did not find any defunct processes belonging to 3224824
[2025-10-11 20:05:34] 2025-10-12 00:04:52,989 | INFO     | did not find any defunct processes belonging to 3224824
[2025-10-11 20:05:34] 2025-10-12 00:04:52,989 | INFO     | ready for new job
[2025-10-11 20:05:34] 2025-10-12 00:04:52,989 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 20:05:34] 2025-10-12 00:04:52,993 | INFO     | ***************************************
[2025-10-11 20:05:34] 2025-10-12 00:04:52,993 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 20:05:34] 2025-10-12 00:04:52,994 | INFO     | ***************************************
[2025-10-11 20:05:34] 2025-10-12 00:04:52,994 | INFO     | 
[2025-10-11 20:05:34] 2025-10-12 00:04:53,008 | INFO     | architecture information:
[2025-10-11 20:05:34] 2025-10-12 00:04:53,008 | INFO     | executing command: cat /etc/os-release
[2025-10-11 20:05:34] 2025-10-12 00:04:53,023 | INFO     | cat /etc/os-release:
[2025-10-11 20:05:34] NAME="CentOS Linux"
[2025-10-11 20:05:34] VERSION="7 (Core)"
[2025-10-11 20:05:34] ID="centos"
[2025-10-11 20:05:34] ID_LIKE="rhel fedora"
[2025-10-11 20:05:34] VERSION_ID="7"
[2025-10-11 20:05:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 20:05:34] ANSI_COLOR="0;31"
[2025-10-11 20:05:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 20:05:34] HOME_URL="https://www.centos.org/"
[2025-10-11 20:05:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 20:05:34] 
[2025-10-11 20:05:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 20:05:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 20:05:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 20:05:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 20:05:34] 
[2025-10-11 20:05:34] 2025-10-12 00:04:53,024 | INFO     | ***************************************
[2025-10-11 20:05:34] 2025-10-12 00:04:53,526 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 20:05:34] 2025-10-12 00:04:53,542 | INFO     | sufficient remaining disk space (75863425024 B)
[2025-10-11 20:05:34] 2025-10-12 00:04:53,542 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 20:05:34] 2025-10-12 00:04:53,542 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 20:05:34] 2025-10-12 00:04:53,543 | INFO     | update_server=False
[2025-10-11 20:05:34] 2025-10-12 00:04:53,543 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 20:05:34] 2025-10-12 00:04:53,543 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 20:05:34] 2025-10-12 00:04:53,543 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 20:05:34] 2025-10-12 00:04:53,544 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 20:05:34] 2025-10-12 00:04:53,544 | INFO     | aborting loop
[2025-10-11 20:05:34] 2025-10-12 00:04:54,417 | INFO     | all data control threads have been joined
[2025-10-11 20:05:34] 2025-10-12 00:04:54,548 | INFO     | [job] retrieve thread has finished
[2025-10-11 20:05:34] 2025-10-12 00:04:54,550 | INFO     | [job] job monitor thread has finished
[2025-10-11 20:05:34] 2025-10-12 00:04:54,797 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 20:05:34] 2025-10-12 00:04:54,825 | INFO     | all payload control threads have been joined
[2025-10-11 20:05:34] 2025-10-12 00:04:54,863 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 20:05:34] 2025-10-12 00:04:55,025 | INFO     | all job control threads have been joined
[2025-10-11 20:05:34] 2025-10-12 00:04:55,195 | INFO     | [data] copytool_in thread has finished
[2025-10-11 20:05:34] 2025-10-12 00:04:55,384 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 20:05:34] 2025-10-12 00:04:55,422 | INFO     | [data] control thread has finished
[2025-10-11 20:05:34] 2025-10-12 00:04:55,466 | INFO     | [payload] failed_post thread has finished
[2025-10-11 20:05:34] 2025-10-12 00:04:55,550 | INFO     | [data] copytool_out thread has finished
[2025-10-11 20:05:34] 2025-10-12 00:04:55,578 | INFO     | [payload] validate_post thread has finished
[2025-10-11 20:05:34] 2025-10-12 00:04:55,830 | INFO     | [payload] control thread has finished
[2025-10-11 20:05:34] 2025-10-12 00:04:55,941 | INFO     | [job] validate thread has finished
[2025-10-11 20:05:34] 2025-10-12 00:04:56,031 | INFO     | [job] control thread has finished
[2025-10-11 20:05:34] 2025-10-12 00:04:56,468 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 20:05:34] 2025-10-12 00:04:57,474 | INFO     | [job] queue monitor thread has finished
[2025-10-11 20:05:34] 2025-10-12 00:04:57,550 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 20:05:34] 2025-10-12 00:05:04,467 | INFO     | job.realtimelogging is not enabled
[2025-10-11 20:05:34] 2025-10-12 00:05:05,472 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 20:05:34] 2025-10-12 00:05:23,557 | INFO     | PID=3218277 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 20:05:34] 2025-10-12 00:05:23,558 | INFO     | .. there are 31 such processes running
[2025-10-11 20:05:34] 2025-10-12 00:05:23,560 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 20:05:34] 2025-10-12 00:05:23,560 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 20:05:34] 2025-10-12 00:05:23,560 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 20:05:34] 2025-10-12 00:05:28,598 | INFO     | [monitor] cgroup control has ended
[2025-10-11 20:05:34] 2025-10-12 00:05:28,834 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140611477124928)>', '<ExcThread(monitor, started 140610845533952)>']
[2025-10-11 20:05:34] 2025-10-12 00:05:29,589 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 20:05:34] 2025-10-12 00:05:29,590 | INFO     | [monitor] control thread has ended
[2025-10-11 20:05:34] 2025-10-12 00:05:33,859 | INFO     | all workflow threads have been joined
[2025-10-11 20:05:34] 2025-10-12 00:05:33,860 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 20:05:34] 2025-10-12 00:05:33,860 | INFO     | traces error code: 0
[2025-10-11 20:05:34] 2025-10-12 00:05:33,861 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 20:05:34] 2025-10-12 00:05:34,024 [wrapper] ==== pilot stdout END ====
[2025-10-11 20:05:34] 2025-10-12 00:05:34,027 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 20:05:34] 2025-10-12 00:05:34,030 [wrapper] pilotpid: 3218277
[2025-10-11 20:05:34] 2025-10-12 00:05:34,032 [wrapper] Pilot exit status: 0
[2025-10-11 20:05:34] 2025-10-12 00:05:34,042 [wrapper] pandaids: 6838634397
[2025-10-11 20:05:34] 2025-10-12 00:05:34,112 [wrapper] cleanup supervisor_pilot 3385530 3218278
[2025-10-11 20:05:34] 2025-10-12 00:05:34,114 [wrapper] Test setup, not cleaning
[2025-10-11 20:05:34] 2025-10-12 00:05:34,117 [wrapper] apfmon messages muted
[2025-10-11 20:05:34] 2025-10-12 00:05:34,119 [wrapper] ==== wrapper stdout END ====
[2025-10-11 20:05:34] 2025-10-12 00:05:34,121 [wrapper] ==== wrapper stderr END ====
[2025-10-11 20:05:34]  *** Error codes and diagnostics ***
[2025-10-11 20:05:34]     "exeErrorCode": 0,
[2025-10-11 20:05:34]     "exeErrorDiag": "",
[2025-10-11 20:05:34]     "pilotErrorCode": 0,
[2025-10-11 20:05:34]     "pilotErrorDiag": "",
[2025-10-11 20:05:34]  *** Listing of results directory ***
[2025-10-11 20:05:34] total 410952
[2025-10-11 20:05:34] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 13:18 queuedata.json
[2025-10-11 20:05:34] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 13:18 pilot3.tar.gz
[2025-10-11 20:05:34] -rwx------. 1 boincer umatlas     36292 Oct 11 13:18 runpilot2-wrapper.sh
[2025-10-11 20:05:34] -rw-r--r--. 1 boincer umatlas       100 Oct 11 18:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 20:05:34] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 18:36 run_atlas
[2025-10-11 20:05:34] -rw-r--r--. 1 boincer umatlas       105 Oct 11 18:36 job.xml
[2025-10-11 20:05:34] -rw-r--r--. 2 boincer umatlas 222751817 Oct 11 18:36 EVNT.46676267._002481.pool.root.1
[2025-10-11 20:05:34] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 18:36 shared
[2025-10-11 20:05:34] -rw-r--r--. 2 boincer umatlas    569678 Oct 11 18:36 input.tar.gz
[2025-10-11 20:05:34] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 18:36 start_atlas.sh
[2025-10-11 20:05:34] -rw-r--r--. 1 boincer umatlas         0 Oct 11 18:36 boinc_lockfile
[2025-10-11 20:05:34] -rw-r--r--. 1 boincer umatlas      2547 Oct 11 18:36 pandaJob.out
[2025-10-11 20:05:34] -rw-------. 1 boincer umatlas    975520 Oct 11 18:36 agis_schedconf.cvmfs.json
[2025-10-11 20:05:34] -rw-------. 1 boincer umatlas   1560580 Oct 11 18:36 agis_ddmendpoints.agis.ALL.json
[2025-10-11 20:05:34] drwx------. 5 boincer umatlas      4096 Oct 11 18:36 pilot3
[2025-10-11 20:05:34] -rw-r--r--. 1 boincer umatlas      6654 Oct 11 20:03 init_data.xml
[2025-10-11 20:05:34] -rw-------. 1 boincer umatlas 191905633 Oct 11 20:04 HITS.46676269._061747.pool.root.1
[2025-10-11 20:05:34] -rw-r--r--. 1 boincer umatlas       530 Oct 11 20:04 boinc_task_state.xml
[2025-10-11 20:05:34] -rw-------. 1 boincer umatlas      1041 Oct 11 20:04 memory_monitor_summary.json
[2025-10-11 20:05:34] -rw-------. 1 boincer umatlas    368429 Oct 11 20:04 log.46676269._061747.job.log.tgz.1
[2025-10-11 20:05:34] -rw-------. 1 boincer umatlas      7823 Oct 11 20:04 heartbeat.json
[2025-10-11 20:05:34] -rw-------. 1 boincer umatlas        95 Oct 11 20:05 pilot_heartbeat.json
[2025-10-11 20:05:34] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 20:05 boinc_mmap_file
[2025-10-11 20:05:34] -rw-r--r--. 1 boincer umatlas        27 Oct 11 20:05 wrapper_checkpoint.txt
[2025-10-11 20:05:34] -rw-------. 1 boincer umatlas      4896 Oct 11 20:05 pilotlog.txt
[2025-10-11 20:05:34] -rw-------. 1 boincer umatlas    763680 Oct 11 20:05 log.46676269._061747.job.log.1
[2025-10-11 20:05:34] -rw-------. 1 boincer umatlas       357 Oct 11 20:05 output.list
[2025-10-11 20:05:34] -rw-r--r--. 1 boincer umatlas       620 Oct 11 20:05 runtime_log
[2025-10-11 20:05:34] -rw-------. 1 boincer umatlas   1146880 Oct 11 20:05 result.tar.gz
[2025-10-11 20:05:34] -rw-------. 1 boincer umatlas       649 Oct 11 20:05 wLYKDm9PsR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm8ISMDmb16GAn.diag
[2025-10-11 20:05:34] -rw-r--r--. 1 boincer umatlas      8690 Oct 11 20:05 runtime_log.err
[2025-10-11 20:05:34] -rw-r--r--. 1 boincer umatlas     21766 Oct 11 20:05 stderr.txt
[2025-10-11 20:05:34] HITS file was successfully produced:
[2025-10-11 20:05:34] -rw-------. 1 boincer umatlas 191905633 Oct 11 20:04 shared/HITS.pool.root.1
[2025-10-11 20:05:34]  *** Contents of shared directory: ***
[2025-10-11 20:05:34] total 406640
[2025-10-11 20:05:34] -rw-r--r--. 2 boincer umatlas 222751817 Oct 11 18:36 ATLAS.root_0
[2025-10-11 20:05:34] -rw-r--r--. 2 boincer umatlas    569678 Oct 11 18:36 input.tar.gz
[2025-10-11 20:05:34] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 18:36 start_atlas.sh
[2025-10-11 20:05:34] -rw-------. 1 boincer umatlas 191905633 Oct 11 20:04 HITS.pool.root.1
[2025-10-11 20:05:34] -rw-------. 1 boincer umatlas   1146880 Oct 11 20:05 result.tar.gz
20:05:35 (3214533): run_atlas exited; CPU time 46050.345334
20:05:35 (3214533): called boinc_finish(0)

</stderr_txt>
]]>

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