Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-11 15:24:30 (69563): vboxwrapper version 26210
2025-10-11 15:24:30 (69563): BOINC client version: 7.16.6
2025-10-11 15:24:30 (69563): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-10-11 15:24:30 (69563): Successfully copied 'init_data.xml' to the shared directory.
2025-10-11 15:24:31 (69563): Create VM. (boinc_c14ac3853f23ed1a, slot#3)
2025-10-11 15:24:31 (69563): Setting Memory Size for VM. (4400MB)
2025-10-11 15:24:31 (69563): Setting CPU Count for VM. (4)
2025-10-11 15:24:32 (69563): Setting Chipset Options for VM.
2025-10-11 15:24:32 (69563): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-11 15:24:32 (69563): Setting Boot Options for VM.
2025-10-11 15:24:33 (69563): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-11 15:24:34 (69563): Enabling VM Network Access.
2025-10-11 15:24:34 (69563): Disabling USB Support for VM.
2025-10-11 15:24:34 (69563): Disabling COM Port Support for VM.
2025-10-11 15:24:34 (69563): Disabling LPT Port Support for VM.
2025-10-11 15:24:35 (69563): Disabling Audio Support for VM.
2025-10-11 15:24:35 (69563): Disabling Clipboard Support for VM.
2025-10-11 15:24:35 (69563): Disabling Drag and Drop Support for VM.
2025-10-11 15:24:36 (69563): Adding storage controller(s) to VM.
2025-10-11 15:24:36 (69563): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-11 15:24:38 (69563): Adding VirtualBox Guest Additions to VM.
2025-10-11 15:24:38 (69563): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-11 15:24:38 (69563): forwarding host port 45263 to guest port 80
2025-10-11 15:24:38 (69563): Enabling remote desktop for VM.
2025-10-11 15:24:39 (69563): Required extension pack not installed, remote desktop not enabled.
2025-10-11 15:24:39 (69563): Enabling shared directory for VM.
2025-10-11 15:24:40 (69563): Starting VM using VBoxManage interface. (boinc_c14ac3853f23ed1a, slot#3)
2025-10-11 15:24:43 (69563): Successfully started VM. (PID = '70009')
2025-10-11 15:24:43 (69563): Reporting VM Process ID to BOINC.
2025-10-11 15:24:43 (69563): Guest Log: BIOS: VirtualBox 6.1.50
2025-10-11 15:24:43 (69563): Guest Log: CPUID EDX: 0x178bfbff
2025-10-11 15:24:43 (69563): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-11 15:24:43 (69563): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-11 15:24:43 (69563): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-11 15:24:43 (69563): Detected: Web Application Enabled (http://localhost:45263)
2025-10-11 15:24:43 (69563): Preference change detected
2025-10-11 15:24:43 (69563): Setting CPU throttle for VM. (100%)
2025-10-11 15:24:43 (69563): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 15:24:45 (69563): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-11 15:24:45 (69563): Guest Log: BIOS: Booting from Hard Disk...
2025-10-11 15:24:49 (69563): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-11 15:24:49 (69563): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-11 15:24:49 (69563): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-11 15:25:00 (69563): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-11 15:25:00 (69563): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-11 15:25:12 (69563): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-11 15:25:12 (69563): Guest Log: 00:00:00.000214 main     Log opened 2025-10-11T22:25:10.158179000Z
2025-10-11 15:25:12 (69563): Guest Log: 00:00:00.000330 main     OS Product: Linux
2025-10-11 15:25:12 (69563): Guest Log: 00:00:00.000380 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-11 15:25:12 (69563): Guest Log: 00:00:00.000408 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-11 15:25:12 (69563): Guest Log: 00:00:00.000481 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-11 15:25:12 (69563): Guest Log: 00:00:00.000482 main     Process ID: 1308
2025-10-11 15:25:12 (69563): Guest Log: 00:00:00.000483 main     Package type: LINUX_64BITS_GENERIC
2025-10-11 15:25:12 (69563): Guest Log: 00:00:00.001900 main     5.2.32 r132073 started. Verbose level = 0
2025-10-11 15:25:13 (69563): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-11 15:25:13 (69563): Guest Log: [INFO] Mounting shared directory
2025-10-11 15:25:13 (69563): Guest Log: [INFO] Checking for init_data.xml
2025-10-11 15:25:18 (69563): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-11 15:25:18 (69563): Guest Log: [INFO] Detected branch: prod
2025-10-11 15:25:18 (69563): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-11 15:25:18 (69563): Guest Log: Copying input files
2025-10-11 15:25:20 (69563): Guest Log: Copied input files into RunAtlas.
2025-10-11 15:25:20 (69563): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-11 15:25:20 (69563): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-11 15:25:20 (69563): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-11 15:25:20 (69563): Guest Log: Further information can be found at the LHC@home message board.
2025-10-11 15:25:29 (69563): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-11 15:25:29 (69563): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-11 15:25:29 (69563): Guest Log: 2.6.3.0 1584 0 32160 151599 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-11 15:25:33 (69563): Guest Log: copied the webapp to /var/www
2025-10-11 15:25:33 (69563): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-11 15:25:33 (69563): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-11 15:25:34 (69563): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-11 15:25:34 (69563): Guest Log:  *** Starting ATLAS job. (PandaID=6838634069 taskID=46676269) ***
2025-10-11 17:03:44 (69563): Status Report: Elapsed Time: '6000.000000'
2025-10-11 17:03:44 (69563): Status Report: CPU Time: '10556.520000'
2025-10-11 18:42:44 (69563): Status Report: Elapsed Time: '12000.000000'
2025-10-11 18:42:44 (69563): Status Report: CPU Time: '22008.750000'
2025-10-11 20:21:45 (69563): Status Report: Elapsed Time: '18000.000000'
2025-10-11 20:21:45 (69563): Status Report: CPU Time: '32606.970000'
2025-10-11 22:00:46 (69563): Status Report: Elapsed Time: '24000.000000'
2025-10-11 22:00:46 (69563): Status Report: CPU Time: '43350.700000'
2025-10-11 23:38:36 (69563): Guest Log:  *** Job finished ***
2025-10-11 23:38:36 (69563): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-11 23:38:36 (69563): Guest Log: 2025-10-12 06:38:04,524 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-11 23:38:36 (69563): Guest Log: 2025-10-12 06:38:04,524 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-11 23:38:36 (69563): Guest Log: 2025-10-12 06:38:27,219 | INFO     | [monitor] cgroup control has ended
2025-10-11 23:38:36 (69563): Guest Log: 2025-10-12 06:38:28,241 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140542109599552)>', '<ExcThread(monitor, started 140541354288896)>']
2025-10-11 23:38:36 (69563): Guest Log: 2025-10-12 06:38:29,257 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-11 23:38:36 (69563): Guest Log: 2025-10-12 06:38:29,257 | INFO     | [monitor] control thread has ended
2025-10-11 23:38:36 (69563): Guest Log: 2025-10-12 06:38:33,248 | INFO     | all workflow threads have been joined
2025-10-11 23:38:36 (69563): Guest Log: 2025-10-12 06:38:33,248 | INFO     | end of generic workflow (traces error code: 0)
2025-10-11 23:38:36 (69563): Guest Log: 2025-10-12 06:38:33,248 | INFO     | traces error code: 0
2025-10-11 23:38:36 (69563): Guest Log: 2025-10-12 06:38:33,249 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-11 23:38:36 (69563): Guest Log: 2025-10-12 06:38:33,422 [wrapper] ==== pilot stdout END ====
2025-10-11 23:38:36 (69563): Guest Log: 2025-10-12 06:38:33,440 [wrapper] ==== wrapper stdout RESUME ====
2025-10-11 23:38:36 (69563): Guest Log: 2025-10-12 06:38:33,461 [wrapper] pilotpid: 5998
2025-10-11 23:38:36 (69563): Guest Log: 2025-10-12 06:38:33,476 [wrapper] Pilot exit status: 0
2025-10-11 23:38:36 (69563): Guest Log: 2025-10-12 06:38:33,553 [wrapper] pandaids: 6838634069
2025-10-11 23:38:36 (69563): Guest Log: 2025-10-12 06:38:33,630 [wrapper] cleanup supervisor_pilot  2731 5999
2025-10-11 23:38:36 (69563): Guest Log: 2025-10-12 06:38:33,650 [wrapper] Test setup, not cleaning
2025-10-11 23:38:36 (69563): Guest Log: 2025-10-12 06:38:33,667 [wrapper] apfmon messages muted
2025-10-11 23:38:36 (69563): Guest Log: 2025-10-12 06:38:33,684 [wrapper] ==== wrapper stdout END ====
2025-10-11 23:38:36 (69563): Guest Log: 2025-10-12 06:38:33,696 [wrapper] ==== wrapper stderr END ====
2025-10-11 23:38:36 (69563): Guest Log:  *** Error codes and diagnostics ***
2025-10-11 23:38:36 (69563): Guest Log:     "exeErrorCode": 0,
2025-10-11 23:38:36 (69563): Guest Log:     "exeErrorDiag": "",
2025-10-11 23:38:36 (69563): Guest Log:     "pilotErrorCode": 0,
2025-10-11 23:38:36 (69563): Guest Log:     "pilotErrorDiag": "",
2025-10-11 23:38:36 (69563): Guest Log:  *** Listing of results directory ***
2025-10-11 23:38:36 (69563): Guest Log: total 201552
2025-10-11 23:38:36 (69563): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 11 17:07 pilot3.tar.gz
2025-10-11 23:38:36 (69563): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 11 17:15 queuedata.json
2025-10-11 23:38:36 (69563): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 11 17:15 runpilot2-wrapper.sh
2025-10-11 23:38:36 (69563): Guest Log: -rw-r--r--. 1 atlas atlas    569678 Oct 11 22:25 input.tar.gz
2025-10-11 23:38:36 (69563): Guest Log: -rw-r--r--. 1 atlas atlas     15120 Oct 11 22:25 start_atlas.sh
2025-10-11 23:38:36 (69563): Guest Log: -rw-r--r--. 1 atlas atlas      6216 Oct 11 22:25 init_data.xml
2025-10-11 23:38:36 (69563): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 11 22:25 EVNT.46676267._002473.pool.root.1 -> /data/./ATLAS.root_0
2025-10-11 23:38:36 (69563): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 11 22:25 pandaJob.out
2025-10-11 23:38:36 (69563): Guest Log: -rw-------. 1 atlas atlas    975520 Oct 11 22:29 agis_schedconf.cvmfs.json
2025-10-11 23:38:36 (69563): Guest Log: drwx------. 5 atlas atlas      4096 Oct 11 22:29 pilot3
2025-10-11 23:38:36 (69563): Guest Log: -rw-------. 1 atlas atlas 194253848 Oct 12 06:36 HITS.46676269._061589.pool.root.1
2025-10-11 23:38:36 (69563): Guest Log: -rw-------. 1 atlas atlas      1030 Oct 12 06:36 memory_monitor_summary.json
2025-10-11 23:38:36 (69563): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 12 06:37 agis_ddmendpoints.agis.ALL.json
2025-10-11 23:38:36 (69563): Guest Log: -rw-------. 1 atlas atlas    583916 Oct 12 06:37 log.46676269._061589.job.log.tgz.1
2025-10-11 23:38:36 (69563): Guest Log: -rw-------. 1 atlas atlas        95 Oct 12 06:37 pilot_heartbeat.json
2025-10-11 23:38:36 (69563): Guest Log: -rw-------. 1 atlas atlas      7823 Oct 12 06:37 heartbeat.json
2025-10-11 23:38:36 (69563): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 12 06:38 pilotlog.txt
2025-10-11 23:38:36 (69563): Guest Log: -rw-------. 1 atlas atlas   3568227 Oct 12 06:38 log.46676269._061589.job.log.1
2025-10-11 23:38:36 (69563): Guest Log: -rw-------. 1 atlas atlas       357 Oct 12 06:38 output.list
2025-10-11 23:38:36 (69563): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 12 06:38 runtime_log
2025-10-11 23:38:36 (69563): Guest Log: -rw-------. 1 atlas atlas   4167680 Oct 12 06:38 result.tar.gz
2025-10-11 23:38:36 (69563): Guest Log: -rw-r--r--. 1 atlas atlas      8622 Oct 12 06:38 runtime_log.err
2025-10-11 23:38:36 (69563): Guest Log: -rw-------. 1 atlas atlas       654 Oct 12 06:38 BvrNDmCNsR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm82gNDmg53VPo.diag
2025-10-11 23:38:36 (69563): Guest Log: Looking for outputfile HITS.46676269._061589.pool.root.1
2025-10-11 23:38:36 (69563): Guest Log: HITS file was successfully produced
2025-10-11 23:38:36 (69563): Guest Log: -rw-------. 1 atlas atlas 194253848 Oct 12 06:36 /home/atlas/RunAtlas/HITS.46676269._061589.pool.root.1
2025-10-11 23:38:36 (69563): Guest Log: Successfully finished the ATLAS job!
2025-10-11 23:38:36 (69563): Guest Log: Copying the results back to the shared directory!
2025-10-11 23:38:36 (69563): Guest Log:  *** Contents of shared directory: ***
2025-10-11 23:38:37 (69563): Guest Log: total 222660
2025-10-11 23:38:37 (69563): Guest Log: -rw-r--r--. 1 root root 223228031 Oct 11 22:24 ATLAS.root_0
2025-10-11 23:38:37 (69563): Guest Log: -rw-r--r--. 1 root root      6216 Oct 11 22:24 init_data.xml
2025-10-11 23:38:37 (69563): Guest Log: -rw-r--r--. 1 root root    569678 Oct 11 22:24 input.tar.gz
2025-10-11 23:38:37 (69563): Guest Log: -rw-r--r--. 1 root root   4167680 Oct 12 06:38 result.tar.gz
2025-10-11 23:38:37 (69563): Guest Log: -rw-r--r--. 1 root root     15120 Oct 11 22:24 start_atlas.sh
2025-10-11 23:38:37 (69563): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-11 23:38:37 (69563): VM Completion File Detected.
2025-10-11 23:38:37 (69563): Powering off VM.
2025-10-11 23:38:38 (69563): Successfully stopped VM.
2025-10-11 23:38:38 (69563): Deregistering VM. (boinc_c14ac3853f23ed1a, slot#3)
2025-10-11 23:38:38 (69563): Removing network bandwidth throttle group from VM.
2025-10-11 23:38:38 (69563): Removing VM from VirtualBox.
2025-10-11 23:38:43 (69563): called boinc_finish(0)

</stderr_txt>
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