Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:57:59 (2557035): wrapper (7.7.26015): starting
14:57:59 (2557035): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 14:57:59] Arguments: --nthreads 3
[2025-10-12 14:57:59] Threads: 3
[2025-10-12 14:57:59] Checking for CVMFS
[2025-10-12 14:57:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:57:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:57:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:57:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:57:59] 2.9.2.0 193215 8704 89604 151620 2 57 4175697 36864001 12 130560 0 6212898 99.990 294221 867 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 14:57:59] CVMFS is ok
[2025-10-12 14:57:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 14:57:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 14:57:59] Further information can be found at the LHC@home message board.
[2025-10-12 14:57:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:57:59] Checking for apptainer binary...
[2025-10-12 14:57:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 14:57:59] Running /usr/bin/apptainer --version
[2025-10-12 14:57:59] apptainer version 1.4.1-1.1
[2025-10-12 14:57:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:57:59] thA383
[2025-10-12 14:57:59] apptainer works
[2025-10-12 14:57:59] Set ATHENA_PROC_NUMBER=3
[2025-10-12 14:57:59] Set ATHENA_CORE_NUMBER=3
[2025-10-12 14:57:59] Starting ATLAS job with PandaID=6838633956
[2025-10-12 14:57:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 16:20:18]  *** The last 200 lines of the pilot log: ***
[2025-10-12 16:20:18] 2025-10-12 14:19:43,450 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 16:20:18] 2025-10-12 14:19:43,450 | INFO     | collected zombie processes
[2025-10-12 16:20:18] 2025-10-12 14:19:43,450 | INFO     | will attempt to kill all subprocesses of pid=2567184
[2025-10-12 16:20:18] 2025-10-12 14:19:43,492 | INFO     | process IDs to be killed: [2567184] (in reverse order)
[2025-10-12 16:20:18] 2025-10-12 14:19:43,516 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 16:20:18] 2025-10-12 14:19:43,516 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 16:20:18] 2025-10-12 14:19:43,517 | INFO     | did not find any defunct processes belonging to 2567184
[2025-10-12 16:20:18] 2025-10-12 14:19:43,518 | INFO     | did not find any defunct processes belonging to 2567184
[2025-10-12 16:20:18] 2025-10-12 14:19:43,518 | INFO     | ready for new job
[2025-10-12 16:20:18] 2025-10-12 14:19:43,518 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 16:20:18] 2025-10-12 14:19:43,519 | INFO     | ***************************************
[2025-10-12 16:20:18] 2025-10-12 14:19:43,519 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 16:20:18] 2025-10-12 14:19:43,519 | INFO     | ***************************************
[2025-10-12 16:20:18] 2025-10-12 14:19:43,519 | INFO     | 
[2025-10-12 16:20:18] 2025-10-12 14:19:43,519 | INFO     | architecture information:
[2025-10-12 16:20:18] 2025-10-12 14:19:43,519 | INFO     | executing command: cat /etc/os-release
[2025-10-12 16:20:18] 2025-10-12 14:19:43,528 | INFO     | cat /etc/os-release:
[2025-10-12 16:20:18] NAME="CentOS Linux"
[2025-10-12 16:20:18] VERSION="7 (Core)"
[2025-10-12 16:20:18] ID="centos"
[2025-10-12 16:20:18] ID_LIKE="rhel fedora"
[2025-10-12 16:20:18] VERSION_ID="7"
[2025-10-12 16:20:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 16:20:18] ANSI_COLOR="0;31"
[2025-10-12 16:20:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 16:20:18] HOME_URL="https://www.centos.org/"
[2025-10-12 16:20:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 16:20:18] 
[2025-10-12 16:20:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 16:20:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 16:20:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 16:20:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 16:20:18] 
[2025-10-12 16:20:18] 2025-10-12 14:19:43,528 | INFO     | ***************************************
[2025-10-12 16:20:18] 2025-10-12 14:19:44,031 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 16:20:18] 2025-10-12 14:19:44,044 | INFO     | sufficient remaining disk space (255302041600 B)
[2025-10-12 16:20:18] 2025-10-12 14:19:44,044 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 16:20:18] 2025-10-12 14:19:44,044 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 16:20:18] 2025-10-12 14:19:44,044 | INFO     | update_server=False
[2025-10-12 16:20:18] 2025-10-12 14:19:44,044 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 16:20:18] 2025-10-12 14:19:44,044 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:20:18] 2025-10-12 14:19:44,044 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 16:20:18] 2025-10-12 14:19:44,184 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 16:20:18] 2025-10-12 14:19:44,184 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 16:20:18] 2025-10-12 14:19:44,184 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:20:18] 2025-10-12 14:19:44,184 | INFO     | will abort loop
[2025-10-12 16:20:18] 2025-10-12 14:19:44,347 | INFO     | all payload control threads have been joined
[2025-10-12 16:20:18] 2025-10-12 14:19:44,973 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 16:20:18] 2025-10-12 14:19:45,037 | INFO     | all data control threads have been joined
[2025-10-12 16:20:18] 2025-10-12 14:19:45,045 | INFO     | [job] retrieve thread has finished
[2025-10-12 16:20:18] 2025-10-12 14:19:45,045 | INFO     | all job control threads have been joined
[2025-10-12 16:20:18] 2025-10-12 14:19:45,049 | INFO     | [job] queue monitor thread has finished
[2025-10-12 16:20:18] 2025-10-12 14:19:45,061 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 16:20:18] 2025-10-12 14:19:45,190 | INFO     | [job] job monitor thread has finished
[2025-10-12 16:20:18] 2025-10-12 14:19:45,353 | INFO     | [payload] control thread has finished
[2025-10-12 16:20:18] 2025-10-12 14:19:45,481 | INFO     | [payload] validate_post thread has finished
[2025-10-12 16:20:18] 2025-10-12 14:19:45,949 | INFO     | [data] copytool_in thread has finished
[2025-10-12 16:20:18] 2025-10-12 14:19:46,042 | INFO     | [data] control thread has finished
[2025-10-12 16:20:18] 2025-10-12 14:19:46,051 | INFO     | [job] control thread has finished
[2025-10-12 16:20:18] 2025-10-12 14:19:46,374 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 16:20:18] 2025-10-12 14:19:46,466 | INFO     | [job] validate thread has finished
[2025-10-12 16:20:18] 2025-10-12 14:19:46,481 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 16:20:18] 2025-10-12 14:19:46,588 | INFO     | [payload] failed_post thread has finished
[2025-10-12 16:20:18] 2025-10-12 14:19:46,979 | INFO     | [data] copytool_out thread has finished
[2025-10-12 16:20:18] 2025-10-12 14:19:48,051 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 16:20:18] 2025-10-12 14:19:54,223 | INFO     | job.realtimelogging is not enabled
[2025-10-12 16:20:18] 2025-10-12 14:19:55,229 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 16:20:18] 2025-10-12 14:20:12,610 | INFO     | [monitor] cgroup control has ended
[2025-10-12 16:20:18] 2025-10-12 14:20:13,053 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140054486460224)>', '<ExcThread(monitor, started 140053607065344)>']
[2025-10-12 16:20:18] 2025-10-12 14:20:15,043 | INFO     | PID=2560758 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 16:20:18] 2025-10-12 14:20:15,043 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 16:20:18] 2025-10-12 14:20:15,043 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 16:20:18] 2025-10-12 14:20:15,043 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 16:20:18] 2025-10-12 14:20:15,043 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 16:20:18] 2025-10-12 14:20:15,043 | INFO     | [monitor] control thread has ended
[2025-10-12 16:20:18] 2025-10-12 14:20:18,059 | INFO     | all workflow threads have been joined
[2025-10-12 16:20:18] 2025-10-12 14:20:18,060 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 16:20:18] 2025-10-12 14:20:18,060 | INFO     | traces error code: 0
[2025-10-12 16:20:18] 2025-10-12 14:20:18,060 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 16:20:18] 2025-10-12 14:20:18,110 [wrapper] ==== pilot stdout END ====
[2025-10-12 16:20:18] 2025-10-12 14:20:18,113 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 16:20:18] 2025-10-12 14:20:18,115 [wrapper] pilotpid: 2560758
[2025-10-12 16:20:18] 2025-10-12 14:20:18,117 [wrapper] Pilot exit status: 0
[2025-10-12 16:20:18] 2025-10-12 14:20:18,124 [wrapper] pandaids: 6838633956
[2025-10-12 16:20:18] 2025-10-12 14:20:18,140 [wrapper] cleanup supervisor_pilot 2579011 2560759
[2025-10-12 16:20:18] 2025-10-12 14:20:18,142 [wrapper] Test setup, not cleaning
[2025-10-12 16:20:18] 2025-10-12 14:20:18,145 [wrapper] apfmon messages muted
[2025-10-12 16:20:18] 2025-10-12 14:20:18,147 [wrapper] ==== wrapper stdout END ====
[2025-10-12 16:20:18] 2025-10-12 14:20:18,149 [wrapper] ==== wrapper stderr END ====
[2025-10-12 16:20:18]  *** Error codes and diagnostics ***
[2025-10-12 16:20:18]     "exeErrorCode": 0,
[2025-10-12 16:20:18]     "exeErrorDiag": "",
[2025-10-12 16:20:18]     "pilotErrorCode": 0,
[2025-10-12 16:20:18]     "pilotErrorDiag": "",
[2025-10-12 16:20:18]  *** Listing of results directory ***
[2025-10-12 16:20:18] total 411204
[2025-10-12 16:20:18] -rw-r--r-- 1 boinc boinc    557409 Oct 11 19:07 pilot3.tar.gz
[2025-10-12 16:20:18] -rw-r--r-- 1 boinc boinc      5112 Oct 11 19:10 queuedata.json
[2025-10-12 16:20:18] -rwx------ 1 boinc boinc     36292 Oct 11 19:10 runpilot2-wrapper.sh
[2025-10-12 16:20:18] -rw-r--r-- 1 boinc boinc       100 Oct 12 14:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 16:20:18] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 14:57 run_atlas
[2025-10-12 16:20:18] -rw-r--r-- 1 boinc boinc       105 Oct 12 14:57 job.xml
[2025-10-12 16:20:18] -rw-r--r-- 2 boinc boinc 224015251 Oct 12 14:57 EVNT.46676267._002469.pool.root.1
[2025-10-12 16:20:18] drwxrwx--x 2 boinc boinc      4096 Oct 12 14:57 shared
[2025-10-12 16:20:18] -rw-r--r-- 2 boinc boinc    569681 Oct 12 14:57 input.tar.gz
[2025-10-12 16:20:18] -rw-r--r-- 2 boinc boinc     15120 Oct 12 14:57 start_atlas.sh
[2025-10-12 16:20:18] -rw-r--r-- 1 boinc boinc         0 Oct 12 14:57 boinc_setup_complete
[2025-10-12 16:20:18] -rw-r--r-- 1 boinc boinc      6437 Oct 12 14:57 init_data.xml
[2025-10-12 16:20:18] -rw-r--r-- 1 boinc boinc         0 Oct 12 14:57 boinc_lockfile
[2025-10-12 16:20:18] -rw-r--r-- 1 boinc boinc      2550 Oct 12 14:57 pandaJob.out
[2025-10-12 16:20:18] -rw------- 1 boinc boinc    975512 Oct 12 14:58 agis_schedconf.cvmfs.json
[2025-10-12 16:20:18] -rw------- 1 boinc boinc   1560580 Oct 12 14:58 agis_ddmendpoints.agis.ALL.json
[2025-10-12 16:20:18] drwx------ 5 boinc boinc      4096 Oct 12 14:58 pilot3
[2025-10-12 16:20:18] -rw------- 1 boinc boinc 191236872 Oct 12 16:19 HITS.46676269._061476.pool.root.1
[2025-10-12 16:20:18] -rw-r--r-- 1 boinc boinc       529 Oct 12 16:19 boinc_task_state.xml
[2025-10-12 16:20:18] -rw------- 1 boinc boinc        95 Oct 12 16:19 pilot_heartbeat.json
[2025-10-12 16:20:18] -rw------- 1 boinc boinc      1021 Oct 12 16:19 memory_monitor_summary.json
[2025-10-12 16:20:18] -rw------- 1 boinc boinc    245106 Oct 12 16:19 log.46676269._061476.job.log.tgz.1
[2025-10-12 16:20:18] -rw------- 1 boinc boinc      7776 Oct 12 16:19 heartbeat.json
[2025-10-12 16:20:18] -rw-r--r-- 1 boinc boinc        27 Oct 12 16:19 wrapper_checkpoint.txt
[2025-10-12 16:20:18] -rw-r--r-- 1 boinc boinc      8192 Oct 12 16:19 boinc_mmap_file
[2025-10-12 16:20:18] -rw------- 1 boinc boinc      5010 Oct 12 16:20 pilotlog.txt
[2025-10-12 16:20:18] -rw------- 1 boinc boinc    720860 Oct 12 16:20 log.46676269._061476.job.log.1
[2025-10-12 16:20:18] -rw------- 1 boinc boinc       357 Oct 12 16:20 output.list
[2025-10-12 16:20:18] -rw-r--r-- 1 boinc boinc       620 Oct 12 16:20 runtime_log
[2025-10-12 16:20:18] -rw------- 1 boinc boinc    983040 Oct 12 16:20 result.tar.gz
[2025-10-12 16:20:18] -rw-r--r-- 1 boinc boinc      8777 Oct 12 16:20 runtime_log.err
[2025-10-12 16:20:18] -rw------- 1 boinc boinc       658 Oct 12 16:20 fJoNDm3HsR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm31gNDmrWM0Bo.diag
[2025-10-12 16:20:18] -rw-r--r-- 1 boinc boinc     10737 Oct 12 16:20 stderr.txt
[2025-10-12 16:20:18] HITS file was successfully produced:
[2025-10-12 16:20:18] -rw------- 1 boinc boinc 191236872 Oct 12 16:19 shared/HITS.pool.root.1
[2025-10-12 16:20:18]  *** Contents of shared directory: ***
[2025-10-12 16:20:18] total 407068
[2025-10-12 16:20:18] -rw-r--r-- 2 boinc boinc 224015251 Oct 12 14:57 ATLAS.root_0
[2025-10-12 16:20:18] -rw-r--r-- 2 boinc boinc    569681 Oct 12 14:57 input.tar.gz
[2025-10-12 16:20:18] -rw-r--r-- 2 boinc boinc     15120 Oct 12 14:57 start_atlas.sh
[2025-10-12 16:20:18] -rw------- 1 boinc boinc 191236872 Oct 12 16:19 HITS.pool.root.1
[2025-10-12 16:20:18] -rw------- 1 boinc boinc    983040 Oct 12 16:20 result.tar.gz
16:20:19 (2557035): run_atlas exited; CPU time 14030.556233
16:20:19 (2557035): called boinc_finish(0)

</stderr_txt>
]]>

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