Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:14:57 (3585238): wrapper (7.7.26015): starting
14:14:57 (3585238): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 14:14:57] Arguments: --nthreads 4
[2025-10-12 14:14:57] Threads: 4
[2025-10-12 14:14:57] Checking for CVMFS
[2025-10-12 14:14:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:14:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:14:57] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:14:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:14:58] 2.13.2.0 1261730 1910 50852 151604 3 188 3689540 6144000 2733 130560 0 5129042 99.997 60250 95 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.253:3128 1
[2025-10-12 14:14:58] CVMFS is ok
[2025-10-12 14:14:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:14:58] Checking for apptainer binary...
[2025-10-12 14:14:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 14:14:58] Running /usr/bin/apptainer --version
[2025-10-12 14:14:58] apptainer version 1.4.0
[2025-10-12 14:14:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:14:58] Zen
[2025-10-12 14:14:58] apptainer works
[2025-10-12 14:14:58] Set ATHENA_PROC_NUMBER=4
[2025-10-12 14:14:58] Set ATHENA_CORE_NUMBER=4
[2025-10-12 14:14:58] Starting ATLAS job with PandaID=6840843685
[2025-10-12 14:14:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/michael/Boinc/BOINC/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 15:45:24]  *** The last 200 lines of the pilot log: ***
[2025-10-12 15:45:24] 2025-10-12 04:44:33,112 | INFO     | time since job start (5363s) is within the limit (172800.0s)
[2025-10-12 15:45:24] 2025-10-12 04:44:33,622 | WARNING  | process 3595675 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 15:45:24] 2025-10-12 04:44:33,622 | INFO     | using path: /home/michael/Boinc/BOINC/slots/5/PanDA_Pilot-6840843685/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 15:45:24] 2025-10-12 04:44:33,622 | INFO     | using path: /home/michael/Boinc/BOINC/slots/5/PanDA_Pilot-6840843685/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 15:45:24] 2025-10-12 04:44:33,623 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 15:45:24] 2025-10-12 04:44:33,623 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 15:45:24] 2025-10-12 04:44:33,623 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2682526 B
[2025-10-12 15:45:24] 2025-10-12 04:44:33,623 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16522 B
[2025-10-12 15:45:24] 2025-10-12 04:44:33,623 | INFO     | executing command: df -mP /home/michael/Boinc/BOINC/slots/5
[2025-10-12 15:45:24] 2025-10-12 04:44:33,636 | INFO     | sufficient remaining disk space (207118925824 B)
[2025-10-12 15:45:24] 2025-10-12 04:44:33,636 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 15:45:24] 2025-10-12 04:44:33,637 | INFO     | size of work directory /home/michael/Boinc/BOINC/slots/5/PanDA_Pilot-6840843685: 2986300 B (within 2537553920 B limit)
[2025-10-12 15:45:24] 2025-10-12 04:44:33,637 | INFO     | pfn file=/home/michael/Boinc/BOINC/slots/5/PanDA_Pilot-6840843685/HITS.46376905._136377.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 15:45:24] 2025-10-12 04:44:33,637 | INFO     | total size of present files: 0 B (workdir size: 2986300 B)
[2025-10-12 15:45:24] 2025-10-12 04:44:33,637 | INFO     | output file size check: skipping output file /home/michael/Boinc/BOINC/slots/5/PanDA_Pilot-6840843685/HITS.46376905._136377.pool.root.1 since it does not exist
[2025-10-12 15:45:24] 2025-10-12 04:44:33,793 | INFO     | number of running child processes to parent process 3595675: 1
[2025-10-12 15:45:24] 2025-10-12 04:44:33,793 | INFO     | maximum number of monitored processes: 6
[2025-10-12 15:45:24] 2025-10-12 04:44:35,118 | INFO     | time since job start (5365s) is within the limit (172800.0s)
[2025-10-12 15:45:24] 2025-10-12 04:44:35,423 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 15:45:24] 2025-10-12 04:44:35,806 | INFO     | job 6840843685 has state=finished
[2025-10-12 15:45:24] 2025-10-12 04:44:35,806 | INFO     | preparing for final server update for job 6840843685 in state='finished'
[2025-10-12 15:45:24] 2025-10-12 04:44:35,806 | INFO     | this job has now completed (state=finished)
[2025-10-12 15:45:24] 2025-10-12 04:44:35,806 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 15:45:24] 2025-10-12 04:44:35,806 | INFO     | log transfer has been attempted: DONE
[2025-10-12 15:45:24] 2025-10-12 04:44:35,806 | INFO     | job 6840843685 has finished - writing final server update
[2025-10-12 15:45:24] 2025-10-12 04:44:35,806 | INFO     | total number of processed events: 400 (read)
[2025-10-12 15:45:24] 2025-10-12 04:44:35,808 | INFO     | executing command: lscpu
[2025-10-12 15:45:24] 2025-10-12 04:44:35,834 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 15:45:24] 2025-10-12 04:44:36,296 | INFO     | monitor loop #404: job 0:6840843685 is in state 'finished'
[2025-10-12 15:45:24] 2025-10-12 04:44:36,296 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:45:24] 2025-10-12 04:44:37,123 | INFO     | time since job start (5367s) is within the limit (172800.0s)
[2025-10-12 15:45:24] 2025-10-12 04:44:38,798 | INFO     | monitor loop #405: job 0:6840843685 is in state 'finished'
[2025-10-12 15:45:24] 2025-10-12 04:44:38,799 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:45:24] 2025-10-12 04:44:39,127 | INFO     | time since job start (5369s) is within the limit (172800.0s)
[2025-10-12 15:45:24] 2025-10-12 04:44:39,460 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 15:45:24] 2025-10-12 04:44:39,463 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 4179.656125
[2025-10-12 15:45:24] 2025-10-12 04:44:39,466 | INFO     | using path: /home/michael/Boinc/BOINC/slots/5/PanDA_Pilot-6840843685/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 15:45:24] 2025-10-12 04:44:39,466 | INFO     | extracted standard info from prmon json
[2025-10-12 15:45:24] 2025-10-12 04:44:39,467 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 15:45:24] 2025-10-12 04:44:39,467 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 15:45:24] 2025-10-12 04:44:39,467 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 15:45:24] 2025-10-12 04:44:39,467 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 15:45:24] 2025-10-12 04:44:39,468 | INFO     | fitting pss+swap vs Time
[2025-10-12 15:45:24] 2025-10-12 04:44:39,468 | INFO     | sum of square deviations: 164765880.0
[2025-10-12 15:45:24] 2025-10-12 04:44:39,469 | INFO     | sum of deviations: 131144815.00000003
[2025-10-12 15:45:24] 2025-10-12 04:44:39,469 | INFO     | mean x: 1760241676.0
[2025-10-12 15:45:24] 2025-10-12 04:44:39,469 | INFO     | mean y: 2319912.4444444445
[2025-10-12 15:45:24] 2025-10-12 04:44:39,469 | INFO     | -- intersect: -1398738176.4894416
[2025-10-12 15:45:24] 2025-10-12 04:44:39,469 | INFO     | intersect: -1398738176.4894416
[2025-10-12 15:45:24] 2025-10-12 04:44:39,469 | INFO     | chi2: 0.007487892230260618
[2025-10-12 15:45:24] 2025-10-12 04:44:39,469 | INFO     | -- intersect: -1398738176.4894416
[2025-10-12 15:45:24] 2025-10-12 04:44:39,469 | INFO     | current memory leak: 0.80 B/s (using 81 data points, chi2=0.01)
[2025-10-12 15:45:24] 2025-10-12 04:44:39,469 | INFO     | could have reported an average CPU frequency of 4284 MHz (6 samples)
[2025-10-12 15:45:24] 2025-10-12 04:44:39,470 | INFO     | ..............................
[2025-10-12 15:45:24] 2025-10-12 04:44:39,470 | INFO     | . Timing measurements:
[2025-10-12 15:45:24] 2025-10-12 04:44:39,470 | INFO     | . get job = 0 s
[2025-10-12 15:45:24] 2025-10-12 04:44:39,470 | INFO     | . initial setup = 5 s
[2025-10-12 15:45:24] 2025-10-12 04:44:39,470 | INFO     | . payload setup = 3 s
[2025-10-12 15:45:24] 2025-10-12 04:44:39,470 | INFO     | . stage-in = 0 s
[2025-10-12 15:45:24] 2025-10-12 04:44:39,470 | INFO     | . payload execution = 5340 s
[2025-10-12 15:45:24] 2025-10-12 04:44:39,470 | INFO     | . stage-out = 0 s
[2025-10-12 15:45:24] 2025-10-12 04:44:39,470 | INFO     | . log creation = 0 s
[2025-10-12 15:45:24] 2025-10-12 04:44:39,470 | INFO     | ..............................
[2025-10-12 15:45:24] 2025-10-12 04:44:39,666 | INFO     | 
[2025-10-12 15:45:24] 2025-10-12 04:44:39,666 | INFO     | job summary report
[2025-10-12 15:45:24] 2025-10-12 04:44:39,666 | INFO     | --------------------------------------------------
[2025-10-12 15:45:24] 2025-10-12 04:44:39,666 | INFO     | PanDA job id: 6840843685
[2025-10-12 15:45:24] 2025-10-12 04:44:39,667 | INFO     | task id: 46376905
[2025-10-12 15:45:24] 2025-10-12 04:44:39,667 | INFO     | errors: (none)
[2025-10-12 15:45:24] 2025-10-12 04:44:39,667 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 15:45:24] 2025-10-12 04:44:39,667 | INFO     | pilot state: finished 
[2025-10-12 15:45:24] 2025-10-12 04:44:39,667 | INFO     | transexitcode: 0
[2025-10-12 15:45:24] 2025-10-12 04:44:39,667 | INFO     | exeerrorcode: 0
[2025-10-12 15:45:24] 2025-10-12 04:44:39,667 | INFO     | exeerrordiag: 
[2025-10-12 15:45:24] 2025-10-12 04:44:39,667 | INFO     | exitcode: 0
[2025-10-12 15:45:24] 2025-10-12 04:44:39,667 | INFO     | exitmsg: OK
[2025-10-12 15:45:24] 2025-10-12 04:44:39,667 | INFO     | cpuconsumptiontime: 20337 s
[2025-10-12 15:45:24] 2025-10-12 04:44:39,667 | INFO     | nevents: 400
[2025-10-12 15:45:24] 2025-10-12 04:44:39,667 | INFO     | neventsw: 0
[2025-10-12 15:45:24] 2025-10-12 04:44:39,667 | INFO     | pid: 3595675
[2025-10-12 15:45:24] 2025-10-12 04:44:39,667 | INFO     | pgrp: 3595675
[2025-10-12 15:45:24] 2025-10-12 04:44:39,667 | INFO     | corecount: 4
[2025-10-12 15:45:24] 2025-10-12 04:44:39,667 | INFO     | event service: False
[2025-10-12 15:45:24] 2025-10-12 04:44:39,667 | INFO     | sizes: {0: 2348777, 3: 2349039, 11: 2349067, 5347: 2375678, 5348: 2384698, 5351: 2384782, 5355: 2385104}
[2025-10-12 15:45:24] 2025-10-12 04:44:39,667 | INFO     | --------------------------------------------------
[2025-10-12 15:45:24] 2025-10-12 04:44:39,667 | INFO     | 
[2025-10-12 15:45:24] 2025-10-12 04:44:39,668 | INFO     | executing command: ls -lF /home/michael/Boinc/BOINC/slots/5
[2025-10-12 15:45:24] 2025-10-12 04:44:39,686 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 15:45:24] 2025-10-12 04:44:39,686 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 15:45:24] 2025-10-12 04:44:39,686 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 15:45:24] 2025-10-12 04:44:39,686 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 15:45:24] 2025-10-12 04:44:39,686 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 15:45:24] 2025-10-12 04:44:39,686 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 15:45:24] 2025-10-12 04:44:39,686 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 15:45:24] 2025-10-12 04:44:39,686 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 15:45:24] 2025-10-12 04:44:39,686 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 15:45:24] 2025-10-12 04:44:39,686 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 15:45:24] 2025-10-12 04:44:39,686 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 15:45:24] 2025-10-12 04:44:39,686 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 15:45:24] 2025-10-12 04:44:39,686 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 15:45:24] 2025-10-12 04:44:39,686 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 15:45:24] 2025-10-12 04:44:39,687 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 15:45:24] 2025-10-12 04:44:39,687 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 15:45:24] 2025-10-12 04:44:39,687 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 15:45:24] 2025-10-12 04:44:39,687 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 15:45:24] 2025-10-12 04:44:39,687 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 15:45:24] 2025-10-12 04:44:39,687 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 15:45:24] 2025-10-12 04:44:39,687 | INFO     | job 6840843685 has completed (purged errors)
[2025-10-12 15:45:24] 2025-10-12 04:44:39,687 | INFO     | overall cleanup function is called
[2025-10-12 15:45:24] 2025-10-12 04:44:40,694 | INFO     | --- collectZombieJob: --- 10, [3595675]
[2025-10-12 15:45:24] 2025-10-12 04:44:40,695 | INFO     | zombie collector waiting for pid 3595675
[2025-10-12 15:45:24] 2025-10-12 04:44:40,695 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 15:45:24] 2025-10-12 04:44:40,695 | INFO     | collected zombie processes
[2025-10-12 15:45:24] 2025-10-12 04:44:40,695 | INFO     | will attempt to kill all subprocesses of pid=3595675
[2025-10-12 15:45:24] 2025-10-12 04:44:40,844 | INFO     | process IDs to be killed: [3595675] (in reverse order)
[2025-10-12 15:45:24] 2025-10-12 04:44:40,898 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 15:45:24] 2025-10-12 04:44:40,898 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 15:45:24] 2025-10-12 04:44:40,902 | INFO     | did not find any defunct processes belonging to 3595675
[2025-10-12 15:45:24] 2025-10-12 04:44:40,905 | INFO     | did not find any defunct processes belonging to 3595675
[2025-10-12 15:45:24] 2025-10-12 04:44:40,905 | INFO     | ready for new job
[2025-10-12 15:45:24] 2025-10-12 04:44:40,905 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 15:45:24] 2025-10-12 04:44:40,907 | INFO     | ***************************************
[2025-10-12 15:45:24] 2025-10-12 04:44:40,907 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 15:45:24] 2025-10-12 04:44:40,907 | INFO     | ***************************************
[2025-10-12 15:45:24] 2025-10-12 04:44:40,907 | INFO     | 
[2025-10-12 15:45:24] 2025-10-12 04:44:40,908 | INFO     | architecture information:
[2025-10-12 15:45:24] 2025-10-12 04:44:40,908 | INFO     | executing command: cat /etc/os-release
[2025-10-12 15:45:24] 2025-10-12 04:44:40,921 | INFO     | cat /etc/os-release:
[2025-10-12 15:45:24] NAME="CentOS Linux"
[2025-10-12 15:45:24] VERSION="7 (Core)"
[2025-10-12 15:45:24] ID="centos"
[2025-10-12 15:45:24] ID_LIKE="rhel fedora"
[2025-10-12 15:45:24] VERSION_ID="7"
[2025-10-12 15:45:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 15:45:24] ANSI_COLOR="0;31"
[2025-10-12 15:45:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 15:45:24] HOME_URL="https://www.centos.org/"
[2025-10-12 15:45:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 15:45:24] 
[2025-10-12 15:45:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 15:45:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 15:45:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 15:45:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 15:45:24] 
[2025-10-12 15:45:24] 2025-10-12 04:44:40,921 | INFO     | ***************************************
[2025-10-12 15:45:24] 2025-10-12 04:44:41,424 | INFO     | executing command: df -mP /home/michael/Boinc/BOINC/slots/5
[2025-10-12 15:45:24] 2025-10-12 04:44:41,438 | INFO     | sufficient remaining disk space (207119974400 B)
[2025-10-12 15:45:24] 2025-10-12 04:44:41,438 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 15:45:24] 2025-10-12 04:44:41,438 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 15:45:24] 2025-10-12 04:44:41,438 | INFO     | update_server=False
[2025-10-12 15:45:24] 2025-10-12 04:44:41,438 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 15:45:24] 2025-10-12 04:44:41,438 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:45:24] 2025-10-12 04:44:41,438 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 15:45:24] 2025-10-12 04:44:41,488 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 15:45:24] 2025-10-12 04:44:41,692 | INFO     | all data control threads have been joined
[2025-10-12 15:45:24] 2025-10-12 04:44:41,873 | INFO     | all job control threads have been joined
[2025-10-12 15:45:24] 2025-10-12 04:44:42,306 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:45:24] 2025-10-12 04:44:42,307 | INFO     | aborting loop
[2025-10-12 15:45:24] 2025-10-12 04:44:42,443 | INFO     | [job] retrieve thread has finished
[2025-10-12 15:45:24] 2025-10-12 04:44:42,443 | INFO     | [job] queue monitor thread has finished
[2025-10-12 15:45:24] 2025-10-12 04:44:42,455 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 15:45:24] 2025-10-12 04:44:42,576 | INFO     | [payload] validate_post thread has finished
[2025-10-12 15:45:24] 2025-10-12 04:44:42,577 | INFO     | [data] copytool_in thread has finished
[2025-10-12 15:45:24] 2025-10-12 04:44:42,631 | INFO     | [payload] failed_post thread has finished
[2025-10-12 15:45:24] 2025-10-12 04:44:42,698 | INFO     | [data] control thread has finished
[2025-10-12 15:45:24] 2025-10-12 04:44:42,743 | INFO     | all payload control threads have been joined
[2025-10-12 15:45:24] 2025-10-12 04:44:42,876 | INFO     | [job] control thread has finished
[2025-10-12 15:45:24] 2025-10-12 04:44:43,311 | INFO     | [job] job monitor thread has finished
[2025-10-12 15:45:24] 2025-10-12 04:44:43,421 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 15:45:24] 2025-10-12 04:44:43,443 | INFO     | [data] copytool_out thread has finished
[2025-10-12 15:45:24] 2025-10-12 04:44:43,748 | INFO     | [payload] control thread has finished
[2025-10-12 15:45:24] 2025-10-12 04:44:43,776 | INFO     | [job] validate thread has finished
[2025-10-12 15:45:24] 2025-10-12 04:44:43,888 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 15:45:24] 2025-10-12 04:44:45,491 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 15:45:24] 2025-10-12 04:44:52,229 | INFO     | job.realtimelogging is not enabled
[2025-10-12 15:45:24] 2025-10-12 04:44:53,234 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 15:45:24] 2025-10-12 04:45:04,509 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-10-12 15:45:24] 2025-10-12 04:45:12,347 | INFO     | PID=3589090 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 15:45:24] 2025-10-12 04:45:12,348 | INFO     | .. there are 4 such processes running
[2025-10-12 15:45:24] 2025-10-12 04:45:12,348 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 15:45:24] 2025-10-12 04:45:12,348 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 15:45:24] 2025-10-12 04:45:12,348 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 15:45:24] 2025-10-12 04:45:18,705 | INFO     | [monitor] cgroup control has ended
[2025-10-12 15:45:24] 2025-10-12 04:45:18,846 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 124888897423168)>', '<ExcThread(monitor, started 124888186615552)>']
[2025-10-12 15:45:24] 2025-10-12 04:45:19,379 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 15:45:24] 2025-10-12 04:45:19,380 | INFO     | [monitor] control thread has ended
[2025-10-12 15:45:24] 2025-10-12 04:45:23,870 | INFO     | all workflow threads have been joined
[2025-10-12 15:45:24] 2025-10-12 04:45:23,871 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 15:45:24] 2025-10-12 04:45:23,871 | INFO     | traces error code: 0
[2025-10-12 15:45:24] 2025-10-12 04:45:23,871 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 15:45:24] 2025-10-12 04:45:23,956 [wrapper] ==== pilot stdout END ====
[2025-10-12 15:45:24] 2025-10-12 04:45:23,958 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 15:45:24] 2025-10-12 04:45:23,960 [wrapper] pilotpid: 3589090
[2025-10-12 15:45:24] 2025-10-12 04:45:23,962 [wrapper] Pilot exit status: 0
[2025-10-12 15:45:24] 2025-10-12 04:45:23,969 [wrapper] pandaids: 6840843685
[2025-10-12 15:45:24] 2025-10-12 04:45:24,006 [wrapper] cleanup supervisor_pilot 3697212 3589091
[2025-10-12 15:45:24] 2025-10-12 04:45:24,009 [wrapper] Test setup, not cleaning
[2025-10-12 15:45:24] 2025-10-12 04:45:24,011 [wrapper] apfmon messages muted
[2025-10-12 15:45:24] 2025-10-12 04:45:24,013 [wrapper] ==== wrapper stdout END ====
[2025-10-12 15:45:24] 2025-10-12 04:45:24,014 [wrapper] ==== wrapper stderr END ====
[2025-10-12 15:45:24]  *** Error codes and diagnostics ***
[2025-10-12 15:45:24]     "exeErrorCode": 0,
[2025-10-12 15:45:24]     "exeErrorDiag": "",
[2025-10-12 15:45:24]     "pilotErrorCode": 0,
[2025-10-12 15:45:24]     "pilotErrorDiag": "",
[2025-10-12 15:45:24]  *** Listing of results directory ***
[2025-10-12 15:45:24] total 393960
[2025-10-12 15:45:24] -rw-r--r-- 1 michael michael    557409 Oct 12 06:43 pilot3.tar.gz
[2025-10-12 15:45:24] -rw-r--r-- 1 michael michael      5112 Oct 12 06:50 queuedata.json
[2025-10-12 15:45:24] -rwx------ 1 michael michael     36292 Oct 12 06:50 runpilot2-wrapper.sh
[2025-10-12 15:45:24] -rw-rw-r-- 1 michael michael       100 Oct 12 14:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 15:45:24] -rwxr-xr-x 1 michael michael      7986 Oct 12 14:14 run_atlas
[2025-10-12 15:45:24] -rw-rw-r-- 1 michael michael       105 Oct 12 14:14 job.xml
[2025-10-12 15:45:24] -rw-r--r-- 2 michael michael 214250263 Oct 12 14:14 EVNT.46376901._003167.pool.root.1
[2025-10-12 15:45:24] -rw-rw-r-- 1 michael michael      9816 Oct 12 14:14 init_data.xml
[2025-10-12 15:45:24] -rw-r--r-- 2 michael michael    569679 Oct 12 14:14 input.tar.gz
[2025-10-12 15:45:24] drwxrwx--x 2 michael michael      4096 Oct 12 14:14 shared
[2025-10-12 15:45:24] -rw-r--r-- 2 michael michael     15120 Oct 12 14:14 start_atlas.sh
[2025-10-12 15:45:24] -rw-rw-r-- 1 michael michael         0 Oct 12 14:14 boinc_lockfile
[2025-10-12 15:45:24] -rw-rw-r-- 1 michael michael      2519 Oct 12 14:14 pandaJob.out
[2025-10-12 15:45:24] -rw------- 1 michael michael    975496 Oct 12 14:15 agis_schedconf.cvmfs.json
[2025-10-12 15:45:24] -rw------- 1 michael michael   1560580 Oct 12 14:15 agis_ddmendpoints.agis.ALL.json
[2025-10-12 15:45:24] drwx------ 5 michael michael      4096 Oct 12 14:15 pilot3
[2025-10-12 15:45:24] -rw------- 1 michael michael 183074494 Oct 12 15:44 HITS.46376905._136377.pool.root.1
[2025-10-12 15:45:24] -rw-rw-r-- 1 michael michael       529 Oct 12 15:44 boinc_task_state.xml
[2025-10-12 15:45:24] -rw------- 1 michael michael      1024 Oct 12 15:44 memory_monitor_summary.json
[2025-10-12 15:45:24] -rw------- 1 michael michael    287338 Oct 12 15:44 log.46376905._136377.job.log.tgz.1
[2025-10-12 15:45:24] -rw------- 1 michael michael      7724 Oct 12 15:44 heartbeat.json
[2025-10-12 15:45:24] -rw------- 1 michael michael        95 Oct 12 15:45 pilot_heartbeat.json
[2025-10-12 15:45:24] -rw-rw-r-- 1 michael michael        27 Oct 12 15:45 wrapper_checkpoint.txt
[2025-10-12 15:45:24] -rw-rw-r-- 1 michael michael      8192 Oct 12 15:45 boinc_mmap_file
[2025-10-12 15:45:24] -rw------- 1 michael michael      4907 Oct 12 15:45 pilotlog.txt
[2025-10-12 15:45:24] -rw------- 1 michael michael    803778 Oct 12 15:45 log.46376905._136377.job.log.1
[2025-10-12 15:45:24] -rw------- 1 michael michael       357 Oct 12 15:45 output.list
[2025-10-12 15:45:24] -rw-rw-r-- 1 michael michael       620 Oct 12 15:45 runtime_log
[2025-10-12 15:45:24] -rw------- 1 michael michael   1105920 Oct 12 15:45 result.tar.gz
[2025-10-12 15:45:24] -rw------- 1 michael michael       641 Oct 12 15:45 ZOjMDmKnuR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2ShNDmY5Yhbn.diag
[2025-10-12 15:45:24] -rw-rw-r-- 1 michael michael      8797 Oct 12 15:45 runtime_log.err
[2025-10-12 15:45:24] -rw-rw-r-- 1 michael michael     22178 Oct 12 15:45 stderr.txt
[2025-10-12 15:45:24] HITS file was successfully produced:
[2025-10-12 15:45:24] -rw------- 1 michael michael 183074494 Oct 12 15:44 shared/HITS.pool.root.1
[2025-10-12 15:45:24]  *** Contents of shared directory: ***
[2025-10-12 15:45:24] total 389680
[2025-10-12 15:45:24] -rw-r--r-- 2 michael michael 214250263 Oct 12 14:14 ATLAS.root_0
[2025-10-12 15:45:24] -rw-r--r-- 2 michael michael    569679 Oct 12 14:14 input.tar.gz
[2025-10-12 15:45:24] -rw-r--r-- 2 michael michael     15120 Oct 12 14:14 start_atlas.sh
[2025-10-12 15:45:24] -rw------- 1 michael michael 183074494 Oct 12 15:44 HITS.pool.root.1
[2025-10-12 15:45:24] -rw------- 1 michael michael   1105920 Oct 12 15:45 result.tar.gz
15:45:25 (3585238): run_atlas exited; CPU time 20382.643295
15:45:25 (3585238): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN