Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:18:38 (2151692): wrapper (7.7.26015): starting
09:18:38 (2151692): wrapper: running run_atlas (--nthreads 2)
[2025-10-12 09:18:38] Arguments: --nthreads 2
[2025-10-12 09:18:38] Threads: 2
[2025-10-12 09:18:38] Checking for CVMFS
[2025-10-12 09:18:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 09:18:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 09:18:38] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 09:18:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 09:18:38] 2.9.2.0 1267943 3844 57836 151611 0 57 31455335 36864001 0 130560 0 2336445 99.988 130393 862 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 09:18:38] CVMFS is ok
[2025-10-12 09:18:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 09:18:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 09:18:38] Further information can be found at the LHC@home message board.
[2025-10-12 09:18:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 09:18:38] Checking for apptainer binary...
[2025-10-12 09:18:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 09:18:38] Running /usr/bin/apptainer --version
[2025-10-12 09:18:38] apptainer version 1.4.1-1.1
[2025-10-12 09:18:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 09:18:38] thA334a
[2025-10-12 09:18:38] apptainer works
[2025-10-12 09:18:38] Set ATHENA_PROC_NUMBER=2
[2025-10-12 09:18:38] Set ATHENA_CORE_NUMBER=2
[2025-10-12 09:18:38] Starting ATLAS job with PandaID=6837631216
[2025-10-12 09:18:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 11:20:07]  *** The last 200 lines of the pilot log: ***
[2025-10-12 11:20:07] 2025-10-12 09:19:35,511 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 11:20:07] 2025-10-12 09:19:35,511 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 11:20:07] 2025-10-12 09:19:35,511 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 11:20:07] 2025-10-12 09:19:35,511 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 11:20:07] 2025-10-12 09:19:35,511 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 11:20:07] 2025-10-12 09:19:35,511 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 11:20:07] 2025-10-12 09:19:35,512 | INFO     | job 6837631216 has completed (purged errors)
[2025-10-12 11:20:07] 2025-10-12 09:19:35,512 | INFO     | overall cleanup function is called
[2025-10-12 11:20:07] 2025-10-12 09:19:36,518 | INFO     | --- collectZombieJob: --- 10, [2161806]
[2025-10-12 11:20:07] 2025-10-12 09:19:36,518 | INFO     | zombie collector waiting for pid 2161806
[2025-10-12 11:20:07] 2025-10-12 09:19:36,518 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 11:20:07] 2025-10-12 09:19:36,519 | INFO     | collected zombie processes
[2025-10-12 11:20:07] 2025-10-12 09:19:36,519 | INFO     | will attempt to kill all subprocesses of pid=2161806
[2025-10-12 11:20:07] 2025-10-12 09:19:36,551 | INFO     | process IDs to be killed: [2161806] (in reverse order)
[2025-10-12 11:20:07] 2025-10-12 09:19:36,571 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 11:20:07] 2025-10-12 09:19:36,571 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 11:20:07] 2025-10-12 09:19:36,572 | INFO     | did not find any defunct processes belonging to 2161806
[2025-10-12 11:20:07] 2025-10-12 09:19:36,573 | INFO     | did not find any defunct processes belonging to 2161806
[2025-10-12 11:20:07] 2025-10-12 09:19:36,573 | INFO     | ready for new job
[2025-10-12 11:20:07] 2025-10-12 09:19:36,573 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 11:20:07] 2025-10-12 09:19:36,573 | INFO     | ***************************************
[2025-10-12 11:20:07] 2025-10-12 09:19:36,573 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 11:20:07] 2025-10-12 09:19:36,573 | INFO     | ***************************************
[2025-10-12 11:20:07] 2025-10-12 09:19:36,573 | INFO     | 
[2025-10-12 11:20:07] 2025-10-12 09:19:36,574 | INFO     | architecture information:
[2025-10-12 11:20:07] 2025-10-12 09:19:36,574 | INFO     | executing command: cat /etc/os-release
[2025-10-12 11:20:07] 2025-10-12 09:19:36,581 | INFO     | cat /etc/os-release:
[2025-10-12 11:20:07] NAME="CentOS Linux"
[2025-10-12 11:20:07] VERSION="7 (Core)"
[2025-10-12 11:20:07] ID="centos"
[2025-10-12 11:20:07] ID_LIKE="rhel fedora"
[2025-10-12 11:20:07] VERSION_ID="7"
[2025-10-12 11:20:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 11:20:07] ANSI_COLOR="0;31"
[2025-10-12 11:20:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 11:20:07] HOME_URL="https://www.centos.org/"
[2025-10-12 11:20:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 11:20:07] 
[2025-10-12 11:20:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 11:20:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 11:20:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 11:20:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 11:20:07] 
[2025-10-12 11:20:07] 2025-10-12 09:19:36,581 | INFO     | ***************************************
[2025-10-12 11:20:07] 2025-10-12 09:19:37,085 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 11:20:07] 2025-10-12 09:19:37,115 | INFO     | sufficient remaining disk space (492492029952 B)
[2025-10-12 11:20:07] 2025-10-12 09:19:37,115 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 11:20:07] 2025-10-12 09:19:37,115 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 11:20:07] 2025-10-12 09:19:37,116 | INFO     | update_server=False
[2025-10-12 11:20:07] 2025-10-12 09:19:37,116 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 11:20:07] 2025-10-12 09:19:37,116 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 11:20:07] 2025-10-12 09:19:37,117 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:20:07] 2025-10-12 09:19:37,117 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:20:07] 2025-10-12 09:19:37,117 | INFO     | aborting loop
[2025-10-12 11:20:07] 2025-10-12 09:19:37,144 | INFO     | all data control threads have been joined
[2025-10-12 11:20:07] 2025-10-12 09:19:37,597 | INFO     | all payload control threads have been joined
[2025-10-12 11:20:07] 2025-10-12 09:19:38,122 | INFO     | [job] retrieve thread has finished
[2025-10-12 11:20:07] 2025-10-12 09:19:38,123 | INFO     | [job] queue monitor thread has finished
[2025-10-12 11:20:07] 2025-10-12 09:19:38,123 | INFO     | [job] job monitor thread has finished
[2025-10-12 11:20:07] 2025-10-12 09:19:38,149 | INFO     | [data] control thread has finished
[2025-10-12 11:20:07] 2025-10-12 09:19:38,251 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 11:20:07] 2025-10-12 09:19:38,426 | INFO     | [payload] failed_post thread has finished
[2025-10-12 11:20:07] 2025-10-12 09:19:38,458 | INFO     | [data] copytool_in thread has finished
[2025-10-12 11:20:07] 2025-10-12 09:19:38,559 | INFO     | all job control threads have been joined
[2025-10-12 11:20:07] 2025-10-12 09:19:38,602 | INFO     | [payload] control thread has finished
[2025-10-12 11:20:07] 2025-10-12 09:19:38,846 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 11:20:07] 2025-10-12 09:19:38,873 | INFO     | [payload] validate_post thread has finished
[2025-10-12 11:20:07] 2025-10-12 09:19:38,880 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 11:20:07] 2025-10-12 09:19:39,122 | INFO     | [data] copytool_out thread has finished
[2025-10-12 11:20:07] 2025-10-12 09:19:39,202 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 11:20:07] 2025-10-12 09:19:39,217 | INFO     | [job] validate thread has finished
[2025-10-12 11:20:07] 2025-10-12 09:19:39,297 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 11:20:07] 2025-10-12 09:19:39,564 | INFO     | [job] control thread has finished
[2025-10-12 11:20:07] 2025-10-12 09:19:42,852 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 11:20:07] 2025-10-12 09:19:56,006 | INFO     | [monitor] cgroup control has ended
[2025-10-12 11:20:07] 2025-10-12 09:19:56,341 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140202239022912)>', '<ExcThread(monitor, started 140201573717760)>']
[2025-10-12 11:20:07] 2025-10-12 09:20:01,367 | INFO     | all workflow threads have been joined
[2025-10-12 11:20:07] 2025-10-12 09:20:01,367 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 11:20:07] 2025-10-12 09:20:01,368 | INFO     | traces error code: 0
[2025-10-12 11:20:07] 2025-10-12 09:20:01,368 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 11:20:07] 2025-10-12 09:20:07,139 | INFO     | PID=2155398 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 11:20:07] 2025-10-12 09:20:07,139 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 11:20:07] 2025-10-12 09:20:07,139 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 11:20:07] 2025-10-12 09:20:07,139 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 11:20:07] 2025-10-12 09:20:07,139 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 11:20:07] 2025-10-12 09:20:07,139 | INFO     | [monitor] control thread has ended
[2025-10-12 11:20:07] 2025-10-12 09:20:07,177 [wrapper] ==== pilot stdout END ====
[2025-10-12 11:20:07] 2025-10-12 09:20:07,180 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 11:20:07] 2025-10-12 09:20:07,182 [wrapper] pilotpid: 2155398
[2025-10-12 11:20:07] 2025-10-12 09:20:07,185 [wrapper] Pilot exit status: 0
[2025-10-12 11:20:07] 2025-10-12 09:20:07,191 [wrapper] pandaids: 6837631216
[2025-10-12 11:20:07] 2025-10-12 09:20:07,202 [wrapper] cleanup supervisor_pilot 2176739 2155399
[2025-10-12 11:20:07] 2025-10-12 09:20:07,204 [wrapper] Test setup, not cleaning
[2025-10-12 11:20:07] 2025-10-12 09:20:07,206 [wrapper] apfmon messages muted
[2025-10-12 11:20:07] 2025-10-12 09:20:07,208 [wrapper] ==== wrapper stdout END ====
[2025-10-12 11:20:07] 2025-10-12 09:20:07,210 [wrapper] ==== wrapper stderr END ====
[2025-10-12 11:20:07]  *** Error codes and diagnostics ***
[2025-10-12 11:20:07]     "exeErrorCode": 0,
[2025-10-12 11:20:07]     "exeErrorDiag": "",
[2025-10-12 11:20:07]     "pilotErrorCode": 0,
[2025-10-12 11:20:07]     "pilotErrorDiag": "",
[2025-10-12 11:20:07]  *** Listing of results directory ***
[2025-10-12 11:20:07] total 407328
[2025-10-12 11:20:07] -rw-r--r-- 1 boinc boinc    557409 Oct 10 16:05 pilot3.tar.gz
[2025-10-12 11:20:07] -rwx------ 1 boinc boinc     36292 Oct 10 16:05 runpilot2-wrapper.sh
[2025-10-12 11:20:07] -rw-r--r-- 1 boinc boinc      5112 Oct 10 16:05 queuedata.json
[2025-10-12 11:20:07] -rw-r--r-- 1 boinc boinc       100 Oct 12 09:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 11:20:07] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 09:18 run_atlas
[2025-10-12 11:20:07] -rw-r--r-- 1 boinc boinc       105 Oct 12 09:18 job.xml
[2025-10-12 11:20:07] -rw-r--r-- 2 boinc boinc 219852764 Oct 12 09:18 EVNT.46676267._001610.pool.root.1
[2025-10-12 11:20:07] -rw-r--r-- 2 boinc boinc    569676 Oct 12 09:18 input.tar.gz
[2025-10-12 11:20:07] -rw-r--r-- 2 boinc boinc     15120 Oct 12 09:18 start_atlas.sh
[2025-10-12 11:20:07] drwxrwx--x 2 boinc boinc      4096 Oct 12 09:18 shared
[2025-10-12 11:20:07] -rw-r--r-- 1 boinc boinc         0 Oct 12 09:18 boinc_setup_complete
[2025-10-12 11:20:07] -rw-r--r-- 1 boinc boinc      6207 Oct 12 09:18 init_data.xml
[2025-10-12 11:20:07] -rw-r--r-- 1 boinc boinc         0 Oct 12 09:18 boinc_lockfile
[2025-10-12 11:20:07] -rw-r--r-- 1 boinc boinc      2549 Oct 12 09:18 pandaJob.out
[2025-10-12 11:20:07] -rw------- 1 boinc boinc    975528 Oct 12 09:18 agis_schedconf.cvmfs.json
[2025-10-12 11:20:07] -rw------- 1 boinc boinc   1560580 Oct 12 09:18 agis_ddmendpoints.agis.ALL.json
[2025-10-12 11:20:07] drwx------ 5 boinc boinc      4096 Oct 12 09:18 pilot3
[2025-10-12 11:20:07] -rw------- 1 boinc boinc 190694159 Oct 12 11:19 HITS.46676269._039694.pool.root.1
[2025-10-12 11:20:07] -rw-r--r-- 1 boinc boinc       529 Oct 12 11:19 boinc_task_state.xml
[2025-10-12 11:20:07] -rw------- 1 boinc boinc        95 Oct 12 11:19 pilot_heartbeat.json
[2025-10-12 11:20:07] -rw------- 1 boinc boinc      1015 Oct 12 11:19 memory_monitor_summary.json
[2025-10-12 11:20:07] -rw------- 1 boinc boinc    286722 Oct 12 11:19 log.46676269._039694.job.log.tgz.1
[2025-10-12 11:20:07] -rw------- 1 boinc boinc      7759 Oct 12 11:19 heartbeat.json
[2025-10-12 11:20:07] -rw-r--r-- 1 boinc boinc      8192 Oct 12 11:19 boinc_mmap_file
[2025-10-12 11:20:07] -rw-r--r-- 1 boinc boinc        27 Oct 12 11:19 wrapper_checkpoint.txt
[2025-10-12 11:20:07] -rw------- 1 boinc boinc       747 Oct 12 11:20 pilotlog.txt
[2025-10-12 11:20:07] -rw------- 1 boinc boinc   1048005 Oct 12 11:20 log.46676269._039694.job.log.1
[2025-10-12 11:20:07] -rw------- 1 boinc boinc       357 Oct 12 11:20 output.list
[2025-10-12 11:20:07] -rw-r--r-- 1 boinc boinc       620 Oct 12 11:20 runtime_log
[2025-10-12 11:20:07] -rw------- 1 boinc boinc   1351680 Oct 12 11:20 result.tar.gz
[2025-10-12 11:20:07] -rw-r--r-- 1 boinc boinc      8782 Oct 12 11:20 runtime_log.err
[2025-10-12 11:20:07] -rw------- 1 boinc boinc       660 Oct 12 11:20 Nk5KDmtvSR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmx3PMDmEaRDJn.diag
[2025-10-12 11:20:07] -rw-r--r-- 1 boinc boinc     11418 Oct 12 11:20 stderr.txt
[2025-10-12 11:20:07] HITS file was successfully produced:
[2025-10-12 11:20:07] -rw------- 1 boinc boinc 190694159 Oct 12 11:19 shared/HITS.pool.root.1
[2025-10-12 11:20:07]  *** Contents of shared directory: ***
[2025-10-12 11:20:07] total 402832
[2025-10-12 11:20:07] -rw-r--r-- 2 boinc boinc 219852764 Oct 12 09:18 ATLAS.root_0
[2025-10-12 11:20:07] -rw-r--r-- 2 boinc boinc    569676 Oct 12 09:18 input.tar.gz
[2025-10-12 11:20:07] -rw-r--r-- 2 boinc boinc     15120 Oct 12 09:18 start_atlas.sh
[2025-10-12 11:20:07] -rw------- 1 boinc boinc 190694159 Oct 12 11:19 HITS.pool.root.1
[2025-10-12 11:20:07] -rw------- 1 boinc boinc   1351680 Oct 12 11:20 result.tar.gz
11:20:08 (2151692): run_atlas exited; CPU time 14070.849091
11:20:08 (2151692): called boinc_finish(0)

</stderr_txt>
]]>

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