Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:57:27 (22847): wrapper (7.7.26015): starting
17:57:27 (22847): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 17:57:27] Arguments: --nthreads 12
[2025-10-11 17:57:27] Threads: 12
[2025-10-11 17:57:27] Checking for CVMFS
[2025-10-11 17:57:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 17:57:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 17:57:27] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 17:57:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 17:57:27] 2.11.2.0 25590 122692 91044 151597 2 57 14055121 20275201 1 130560 2 76711417 99.991 3926357 21927 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 17:57:27] CVMFS is ok
[2025-10-11 17:57:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 17:57:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 17:57:27] Further information can be found at the LHC@home message board.
[2025-10-11 17:57:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 17:57:27] Checking for apptainer binary...
[2025-10-11 17:57:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 17:57:27] Running /usr/bin/apptainer --version
[2025-10-11 17:57:27] apptainer version 1.3.2-1.el7
[2025-10-11 17:57:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 17:57:29] c-205-24.aglt2.org
[2025-10-11 17:57:29] apptainer works
[2025-10-11 17:57:29] Set ATHENA_PROC_NUMBER=12
[2025-10-11 17:57:29] Set ATHENA_CORE_NUMBER=12
[2025-10-11 17:57:29] Starting ATLAS job with PandaID=6837630251
[2025-10-11 17:57:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 19:13:04]  *** The last 200 lines of the pilot log: ***
[2025-10-11 19:13:04]  protocol_id=None
[2025-10-11 19:13:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-11 19:13:04]  replicas=None
[2025-10-11 19:13:04]  scope=mc23_13p6TeV
[2025-10-11 19:13:04]  status=None
[2025-10-11 19:13:04]  status_code=0
[2025-10-11 19:13:04]  storage_token=
[2025-10-11 19:13:04]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6837630251/log.46676269._038891.job.log.tgz.1
[2025-10-11 19:13:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1a/38/log.46676269._038891.job.log.tgz.1
[2025-10-11 19:13:04]  workdir=None
[2025-10-11 19:13:04] ]
[2025-10-11 19:13:04] 2025-10-11 23:12:38,541 | INFO     | transferring file log.46676269._038891.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6837630251/log.46676269._038891.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 19:13:04] 2025-10-11 23:12:38,542 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6837630251/log.46676269._038891.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._038891.job
[2025-10-11 19:13:04] 2025-10-11 23:12:38,564 | INFO     | adding to output.list: log.46676269._038891.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1a/38/log.46676269._038891.job.log.tg
[2025-10-11 19:13:04] 2025-10-11 23:12:38,565 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 19:13:04] 2025-10-11 23:12:38,565 | INFO     | summary of transferred files:
[2025-10-11 19:13:04] 2025-10-11 23:12:38,565 | INFO     |  -- lfn=log.46676269._038891.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 19:13:04] 2025-10-11 23:12:38,566 | INFO     | stage-out finished correctly
[2025-10-11 19:13:04] 2025-10-11 23:12:38,649 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 19:13:04] 2025-10-11 23:12:39,336 | INFO     | job 6837630251 has state=finished
[2025-10-11 19:13:04] 2025-10-11 23:12:39,336 | INFO     | preparing for final server update for job 6837630251 in state='finished'
[2025-10-11 19:13:04] 2025-10-11 23:12:39,337 | INFO     | this job has now completed (state=finished)
[2025-10-11 19:13:04] 2025-10-11 23:12:39,337 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 19:13:04] 2025-10-11 23:12:39,337 | INFO     | log transfer has been attempted: DONE
[2025-10-11 19:13:04] 2025-10-11 23:12:39,337 | INFO     | job 6837630251 has finished - writing final server update
[2025-10-11 19:13:04] 2025-10-11 23:12:39,338 | INFO     | total number of processed events: 400 (read)
[2025-10-11 19:13:04] 2025-10-11 23:12:39,339 | INFO     | executing command: lscpu
[2025-10-11 19:13:04] 2025-10-11 23:12:39,363 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 19:13:04] 2025-10-11 23:12:39,885 | INFO     | time since job start (4495s) is within the limit (172800.0s)
[2025-10-11 19:13:04] 2025-10-11 23:12:40,707 | INFO     | monitor loop #336: job 0:6837630251 is in state 'finished'
[2025-10-11 19:13:04] 2025-10-11 23:12:40,707 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 19:13:04] 2025-10-11 23:12:41,630 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-10-11 19:13:04] 2025-10-11 23:12:41,890 | INFO     | time since job start (4497s) is within the limit (172800.0s)
[2025-10-11 19:13:04] 2025-10-11 23:12:43,217 | INFO     | monitor loop #337: job 0:6837630251 is in state 'finished'
[2025-10-11 19:13:04] 2025-10-11 23:12:43,217 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 19:13:04] 2025-10-11 23:12:43,896 | INFO     | time since job start (4499s) is within the limit (172800.0s)
[2025-10-11 19:13:04] 2025-10-11 23:12:44,065 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-11 19:13:04] 2025-10-11 23:12:44,069 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-11 19:13:04] 2025-10-11 23:12:44,070 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837630251/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 19:13:04] 2025-10-11 23:12:44,071 | INFO     | extracted standard info from prmon json
[2025-10-11 19:13:04] 2025-10-11 23:12:44,071 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 19:13:04] 2025-10-11 23:12:44,071 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 19:13:04] 2025-10-11 23:12:44,071 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 19:13:04] 2025-10-11 23:12:44,072 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 19:13:04] 2025-10-11 23:12:44,073 | INFO     | fitting pss+swap vs Time
[2025-10-11 19:13:04] 2025-10-11 23:12:44,073 | INFO     | sum of square deviations: 93240818.0
[2025-10-11 19:13:04] 2025-10-11 23:12:44,074 | INFO     | sum of deviations: -127975925.9999999
[2025-10-11 19:13:04] 2025-10-11 23:12:44,074 | INFO     | mean x: 1760222212.0
[2025-10-11 19:13:04] 2025-10-11 23:12:44,074 | INFO     | mean y: 2682920.313432836
[2025-10-11 19:13:04] 2025-10-11 23:12:44,074 | INFO     | -- intersect: 2418642715.3730187
[2025-10-11 19:13:04] 2025-10-11 23:12:44,074 | INFO     | intersect: 2418642715.3730187
[2025-10-11 19:13:04] 2025-10-11 23:12:44,074 | INFO     | chi2: 0.03774146199383173
[2025-10-11 19:13:04] 2025-10-11 23:12:44,074 | INFO     | -- intersect: 2418642715.3730187
[2025-10-11 19:13:04] 2025-10-11 23:12:44,074 | INFO     | current memory leak: -1.37 B/s (using 67 data points, chi2=0.04)
[2025-10-11 19:13:04] 2025-10-11 23:12:44,075 | INFO     | could have reported an average CPU frequency of 2047 MHz (6 samples)
[2025-10-11 19:13:04] 2025-10-11 23:12:44,075 | INFO     | ..............................
[2025-10-11 19:13:04] 2025-10-11 23:12:44,075 | INFO     | . Timing measurements:
[2025-10-11 19:13:04] 2025-10-11 23:12:44,075 | INFO     | . get job = 0 s
[2025-10-11 19:13:04] 2025-10-11 23:12:44,075 | INFO     | . initial setup = 2 s
[2025-10-11 19:13:04] 2025-10-11 23:12:44,075 | INFO     | . payload setup = 7 s
[2025-10-11 19:13:04] 2025-10-11 23:12:44,075 | INFO     | . stage-in = 0 s
[2025-10-11 19:13:04] 2025-10-11 23:12:44,076 | INFO     | . payload execution = 4465 s
[2025-10-11 19:13:04] 2025-10-11 23:12:44,076 | INFO     | . stage-out = 0 s
[2025-10-11 19:13:04] 2025-10-11 23:12:44,076 | INFO     | . log creation = 0 s
[2025-10-11 19:13:04] 2025-10-11 23:12:44,076 | INFO     | ..............................
[2025-10-11 19:13:04] 2025-10-11 23:12:44,157 | INFO     | 
[2025-10-11 19:13:04] 2025-10-11 23:12:44,157 | INFO     | job summary report
[2025-10-11 19:13:04] 2025-10-11 23:12:44,158 | INFO     | --------------------------------------------------
[2025-10-11 19:13:04] 2025-10-11 23:12:44,158 | INFO     | PanDA job id: 6837630251
[2025-10-11 19:13:04] 2025-10-11 23:12:44,158 | INFO     | task id: 46676269
[2025-10-11 19:13:04] 2025-10-11 23:12:44,158 | INFO     | errors: (none)
[2025-10-11 19:13:04] 2025-10-11 23:12:44,158 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 19:13:04] 2025-10-11 23:12:44,159 | INFO     | pilot state: finished 
[2025-10-11 19:13:04] 2025-10-11 23:12:44,159 | INFO     | transexitcode: 0
[2025-10-11 19:13:04] 2025-10-11 23:12:44,159 | INFO     | exeerrorcode: 0
[2025-10-11 19:13:04] 2025-10-11 23:12:44,159 | INFO     | exeerrordiag: 
[2025-10-11 19:13:04] 2025-10-11 23:12:44,159 | INFO     | exitcode: 0
[2025-10-11 19:13:04] 2025-10-11 23:12:44,159 | INFO     | exitmsg: OK
[2025-10-11 19:13:04] 2025-10-11 23:12:44,160 | INFO     | cpuconsumptiontime: 47370 s
[2025-10-11 19:13:04] 2025-10-11 23:12:44,160 | INFO     | nevents: 400
[2025-10-11 19:13:04] 2025-10-11 23:12:44,160 | INFO     | neventsw: 0
[2025-10-11 19:13:04] 2025-10-11 23:12:44,160 | INFO     | pid: 481
[2025-10-11 19:13:04] 2025-10-11 23:12:44,160 | INFO     | pgrp: 481
[2025-10-11 19:13:04] 2025-10-11 23:12:44,160 | INFO     | corecount: 12
[2025-10-11 19:13:04] 2025-10-11 23:12:44,160 | INFO     | event service: False
[2025-10-11 19:13:04] 2025-10-11 23:12:44,161 | INFO     | sizes: {0: 2348857, 1: 2348857, 5: 2349147, 11: 2349203, 4476: 2375306, 4478: 2384488, 4483: 2384626}
[2025-10-11 19:13:04] 2025-10-11 23:12:44,161 | INFO     | --------------------------------------------------
[2025-10-11 19:13:04] 2025-10-11 23:12:44,161 | INFO     | 
[2025-10-11 19:13:04] 2025-10-11 23:12:44,161 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 19:13:04] 2025-10-11 23:12:44,186 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 19:13:04] 2025-10-11 23:12:44,186 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 19:13:04] 2025-10-11 23:12:44,186 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 19:13:04] 2025-10-11 23:12:44,186 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 19:13:04] 2025-10-11 23:12:44,187 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 19:13:04] 2025-10-11 23:12:44,187 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 19:13:04] 2025-10-11 23:12:44,187 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 19:13:04] 2025-10-11 23:12:44,187 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 19:13:04] 2025-10-11 23:12:44,187 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 19:13:04] 2025-10-11 23:12:44,187 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 19:13:04] 2025-10-11 23:12:44,188 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 19:13:04] 2025-10-11 23:12:44,188 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 19:13:04] 2025-10-11 23:12:44,188 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 19:13:04] 2025-10-11 23:12:44,188 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 19:13:04] 2025-10-11 23:12:44,188 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 19:13:04] 2025-10-11 23:12:44,188 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 19:13:04] 2025-10-11 23:12:44,189 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 19:13:04] 2025-10-11 23:12:44,189 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 19:13:04] 2025-10-11 23:12:44,189 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 19:13:04] 2025-10-11 23:12:44,189 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 19:13:04] 2025-10-11 23:12:44,189 | INFO     | job 6837630251 has completed (purged errors)
[2025-10-11 19:13:04] 2025-10-11 23:12:44,189 | INFO     | overall cleanup function is called
[2025-10-11 19:13:04] 2025-10-11 23:12:45,194 | INFO     | --- collectZombieJob: --- 10, [481]
[2025-10-11 19:13:04] 2025-10-11 23:12:45,194 | INFO     | zombie collector waiting for pid 481
[2025-10-11 19:13:04] 2025-10-11 23:12:45,194 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 19:13:04] 2025-10-11 23:12:45,194 | INFO     | collected zombie processes
[2025-10-11 19:13:04] 2025-10-11 23:12:45,194 | INFO     | will attempt to kill all subprocesses of pid=481
[2025-10-11 19:13:04] 2025-10-11 23:12:45,286 | INFO     | process IDs to be killed: [481] (in reverse order)
[2025-10-11 19:13:04] 2025-10-11 23:12:45,340 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 19:13:04] 2025-10-11 23:12:45,340 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 19:13:04] 2025-10-11 23:12:45,344 | INFO     | did not find any defunct processes belonging to 481
[2025-10-11 19:13:04] 2025-10-11 23:12:45,348 | INFO     | did not find any defunct processes belonging to 481
[2025-10-11 19:13:04] 2025-10-11 23:12:45,348 | INFO     | ready for new job
[2025-10-11 19:13:04] 2025-10-11 23:12:45,348 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 19:13:04] 2025-10-11 23:12:45,349 | INFO     | ***************************************
[2025-10-11 19:13:04] 2025-10-11 23:12:45,349 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 19:13:04] 2025-10-11 23:12:45,350 | INFO     | ***************************************
[2025-10-11 19:13:04] 2025-10-11 23:12:45,350 | INFO     | 
[2025-10-11 19:13:04] 2025-10-11 23:12:45,350 | INFO     | architecture information:
[2025-10-11 19:13:04] 2025-10-11 23:12:45,351 | INFO     | executing command: cat /etc/os-release
[2025-10-11 19:13:04] 2025-10-11 23:12:45,366 | INFO     | cat /etc/os-release:
[2025-10-11 19:13:04] NAME="CentOS Linux"
[2025-10-11 19:13:04] VERSION="7 (Core)"
[2025-10-11 19:13:04] ID="centos"
[2025-10-11 19:13:04] ID_LIKE="rhel fedora"
[2025-10-11 19:13:04] VERSION_ID="7"
[2025-10-11 19:13:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 19:13:04] ANSI_COLOR="0;31"
[2025-10-11 19:13:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 19:13:04] HOME_URL="https://www.centos.org/"
[2025-10-11 19:13:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 19:13:04] 
[2025-10-11 19:13:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 19:13:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 19:13:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 19:13:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 19:13:04] 
[2025-10-11 19:13:04] 2025-10-11 23:12:45,366 | INFO     | ***************************************
[2025-10-11 19:13:04] 2025-10-11 23:12:45,869 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 19:13:04] 2025-10-11 23:12:45,884 | INFO     | sufficient remaining disk space (29355933696 B)
[2025-10-11 19:13:04] 2025-10-11 23:12:45,885 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 19:13:04] 2025-10-11 23:12:45,885 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 19:13:04] 2025-10-11 23:12:45,885 | INFO     | update_server=False
[2025-10-11 19:13:04] 2025-10-11 23:12:45,885 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 19:13:04] 2025-10-11 23:12:45,886 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 19:13:04] 2025-10-11 23:12:45,886 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-11 19:13:04] 2025-10-11 23:12:45,886 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 19:13:04] 2025-10-11 23:12:45,887 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 19:13:04] 2025-10-11 23:12:45,887 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 19:13:04] 2025-10-11 23:12:46,235 | INFO     | all job control threads have been joined
[2025-10-11 19:13:04] 2025-10-11 23:12:46,420 | INFO     | all data control threads have been joined
[2025-10-11 19:13:04] 2025-10-11 23:12:46,661 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 19:13:04] 2025-10-11 23:12:46,723 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 19:13:04] 2025-10-11 23:12:46,723 | INFO     | aborting loop
[2025-10-11 19:13:04] 2025-10-11 23:12:46,891 | INFO     | [job] retrieve thread has finished
[2025-10-11 19:13:04] 2025-10-11 23:12:46,891 | INFO     | [job] queue monitor thread has finished
[2025-10-11 19:13:04] 2025-10-11 23:12:47,132 | INFO     | [payload] failed_post thread has finished
[2025-10-11 19:13:04] 2025-10-11 23:12:47,153 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 19:13:04] 2025-10-11 23:12:47,241 | INFO     | [job] control thread has finished
[2025-10-11 19:13:04] 2025-10-11 23:12:47,264 | INFO     | all payload control threads have been joined
[2025-10-11 19:13:04] 2025-10-11 23:12:47,425 | INFO     | [data] control thread has finished
[2025-10-11 19:13:04] 2025-10-11 23:12:47,712 | INFO     | [job] validate thread has finished
[2025-10-11 19:13:04] 2025-10-11 23:12:47,728 | INFO     | [job] job monitor thread has finished
[2025-10-11 19:13:04] 2025-10-11 23:12:47,841 | INFO     | [payload] validate_post thread has finished
[2025-10-11 19:13:04] 2025-10-11 23:12:47,858 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 19:13:04] 2025-10-11 23:12:47,861 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 19:13:04] 2025-10-11 23:12:48,266 | INFO     | [data] copytool_in thread has finished
[2025-10-11 19:13:04] 2025-10-11 23:12:48,266 | INFO     | [payload] control thread has finished
[2025-10-11 19:13:04] 2025-10-11 23:12:48,666 | INFO     | [data] copytool_out thread has finished
[2025-10-11 19:13:04] 2025-10-11 23:12:49,238 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 19:13:04] 2025-10-11 23:12:50,944 | INFO     | [monitor] cgroup control has ended
[2025-10-11 19:13:04] 2025-10-11 23:12:53,244 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 19:13:04] 2025-10-11 23:12:56,445 | INFO     | job.realtimelogging is not enabled
[2025-10-11 19:13:04] 2025-10-11 23:12:57,446 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 19:13:04] 2025-10-11 23:12:59,423 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140073877100352)>', '<ExcThread(monitor, started 140073278355200)>']
[2025-10-11 19:13:04] 2025-10-11 23:12:59,957 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 19:13:04] 2025-10-11 23:12:59,957 | INFO     | [monitor] control thread has ended
[2025-10-11 19:13:04] 2025-10-11 23:13:04,442 | INFO     | all workflow threads have been joined
[2025-10-11 19:13:04] 2025-10-11 23:13:04,442 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 19:13:04] 2025-10-11 23:13:04,442 | INFO     | traces error code: 0
[2025-10-11 19:13:04] 2025-10-11 23:13:04,443 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 19:13:04] 2025-10-11 23:13:04,523 [wrapper] ==== pilot stdout END ====
[2025-10-11 19:13:04] 2025-10-11 23:13:04,527 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 19:13:04] 2025-10-11 23:13:04,532 [wrapper] pilotpid: 26535
[2025-10-11 19:13:04] 2025-10-11 23:13:04,535 [wrapper] Pilot exit status: 0
[2025-10-11 19:13:04] 2025-10-11 23:13:04,551 [wrapper] pandaids: 6837630251
[2025-10-11 19:13:04] 2025-10-11 23:13:04,589 [wrapper] cleanup supervisor_pilot 18080 26536
[2025-10-11 19:13:04] 2025-10-11 23:13:04,593 [wrapper] Test setup, not cleaning
[2025-10-11 19:13:04] 2025-10-11 23:13:04,597 [wrapper] apfmon messages muted
[2025-10-11 19:13:04] 2025-10-11 23:13:04,601 [wrapper] ==== wrapper stdout END ====
[2025-10-11 19:13:04] 2025-10-11 23:13:04,605 [wrapper] ==== wrapper stderr END ====
[2025-10-11 19:13:04]  *** Error codes and diagnostics ***
[2025-10-11 19:13:04]     "exeErrorCode": 0,
[2025-10-11 19:13:04]     "exeErrorDiag": "",
[2025-10-11 19:13:04]     "pilotErrorCode": 0,
[2025-10-11 19:13:04]     "pilotErrorDiag": "",
[2025-10-11 19:13:04]  *** Listing of results directory ***
[2025-10-11 19:13:04] total 416944
[2025-10-11 19:13:04] -rw-r--r-- 1 boincer umatlas    557409 Oct 10 09:04 pilot3.tar.gz
[2025-10-11 19:13:04] -rw-r--r-- 1 boincer umatlas      5112 Oct 10 09:09 queuedata.json
[2025-10-11 19:13:04] -rwx------ 1 boincer umatlas     36292 Oct 10 09:10 runpilot2-wrapper.sh
[2025-10-11 19:13:04] -rw-r--r-- 1 boincer umatlas       100 Oct 11 17:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 19:13:04] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 17:57 run_atlas
[2025-10-11 19:13:04] -rw-r--r-- 1 boincer umatlas       105 Oct 11 17:57 job.xml
[2025-10-11 19:13:04] -rw-r--r-- 2 boincer umatlas 223273147 Oct 11 17:57 EVNT.46676267._001578.pool.root.1
[2025-10-11 19:13:04] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 17:57 start_atlas.sh
[2025-10-11 19:13:04] drwxrwx--x 2 boincer umatlas      4096 Oct 11 17:57 shared
[2025-10-11 19:13:04] -rw-r--r-- 2 boincer umatlas    569682 Oct 11 17:57 input.tar.gz
[2025-10-11 19:13:04] -rw-r--r-- 1 boincer umatlas         0 Oct 11 17:57 boinc_lockfile
[2025-10-11 19:13:04] -rw-r--r-- 1 boincer umatlas      2550 Oct 11 17:57 pandaJob.out
[2025-10-11 19:13:04] -rw------- 1 boincer umatlas    975528 Oct 11 17:57 agis_schedconf.cvmfs.json
[2025-10-11 19:13:04] -rw------- 1 boincer umatlas   1560580 Oct 11 17:57 agis_ddmendpoints.agis.ALL.json
[2025-10-11 19:13:04] drwx------ 5 boincer umatlas      4096 Oct 11 17:57 pilot3
[2025-10-11 19:13:04] -rw------- 1 boincer umatlas 197688534 Oct 11 19:12 HITS.46676269._038891.pool.root.1
[2025-10-11 19:13:04] -rw-r--r-- 1 boincer umatlas       530 Oct 11 19:12 boinc_task_state.xml
[2025-10-11 19:13:04] -rw------- 1 boincer umatlas      1048 Oct 11 19:12 memory_monitor_summary.json
[2025-10-11 19:13:04] -rw------- 1 boincer umatlas    394567 Oct 11 19:12 log.46676269._038891.job.log.tgz.1
[2025-10-11 19:13:04] -rw------- 1 boincer umatlas        95 Oct 11 19:12 pilot_heartbeat.json
[2025-10-11 19:13:04] -rw------- 1 boincer umatlas      7851 Oct 11 19:12 heartbeat.json
[2025-10-11 19:13:04] -rw-r--r-- 1 boincer umatlas      5953 Oct 11 19:12 init_data.xml
[2025-10-11 19:13:04] -rw-r--r-- 1 boincer umatlas        27 Oct 11 19:13 wrapper_checkpoint.txt
[2025-10-11 19:13:04] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 19:13 boinc_mmap_file
[2025-10-11 19:13:04] -rw------- 1 boincer umatlas      4624 Oct 11 19:13 pilotlog.txt
[2025-10-11 19:13:04] -rw------- 1 boincer umatlas    650967 Oct 11 19:13 log.46676269._038891.job.log.1
[2025-10-11 19:13:04] -rw------- 1 boincer umatlas       357 Oct 11 19:13 output.list
[2025-10-11 19:13:04] -rw-r--r-- 1 boincer umatlas       620 Oct 11 19:13 runtime_log
[2025-10-11 19:13:04] -rw------- 1 boincer umatlas   1064960 Oct 11 19:13 result.tar.gz
[2025-10-11 19:13:04] -rw-r--r-- 1 boincer umatlas      8705 Oct 11 19:13 runtime_log.err
[2025-10-11 19:13:04] -rw------- 1 boincer umatlas       659 Oct 11 19:13 oDaKDmN4RR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbPdNDmvLb4im.diag
[2025-10-11 19:13:04] -rw-r--r-- 1 boincer umatlas     21625 Oct 11 19:13 stderr.txt
[2025-10-11 19:13:04] HITS file was successfully produced:
[2025-10-11 19:13:04] -rw------- 1 boincer umatlas 197688534 Oct 11 19:12 shared/HITS.pool.root.1
[2025-10-11 19:13:04]  *** Contents of shared directory: ***
[2025-10-11 19:13:04] total 412716
[2025-10-11 19:13:04] -rw-r--r-- 2 boincer umatlas 223273147 Oct 11 17:57 ATLAS.root_0
[2025-10-11 19:13:04] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 17:57 start_atlas.sh
[2025-10-11 19:13:04] -rw-r--r-- 2 boincer umatlas    569682 Oct 11 17:57 input.tar.gz
[2025-10-11 19:13:04] -rw------- 1 boincer umatlas 197688534 Oct 11 19:12 HITS.pool.root.1
[2025-10-11 19:13:04] -rw------- 1 boincer umatlas   1064960 Oct 11 19:13 result.tar.gz
19:13:05 (22847): run_atlas exited; CPU time 47343.422936
19:13:05 (22847): called boinc_finish(0)

</stderr_txt>
]]>

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