Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
07:27:32 (963151): wrapper (7.7.26015): starting
07:27:32 (963151): wrapper: running run_atlas (--nthreads 6)
[2025-10-12 07:27:32] Arguments: --nthreads 6
[2025-10-12 07:27:32] Threads: 6
[2025-10-12 07:27:32] Checking for CVMFS
[2025-10-12 07:27:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 07:27:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 07:27:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 07:27:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 07:27:32] 2.11.5.0 4257 567 61372 151609 2 188 2783880 4194304 1836 130560 0 2149155 99.997 24195 339 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.3.250:3128 1
[2025-10-12 07:27:32] CVMFS is ok
[2025-10-12 07:27:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 07:27:32] Checking for apptainer binary...
[2025-10-12 07:27:32] apptainer is not installed, using version from CVMFS
[2025-10-12 07:27:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 07:27:32] boinc-b450f
[2025-10-12 07:27:32] apptainer works
[2025-10-12 07:27:32] Set ATHENA_PROC_NUMBER=6
[2025-10-12 07:27:32] Set ATHENA_CORE_NUMBER=6
[2025-10-12 07:27:32] Starting ATLAS job with PandaID=6838452927
[2025-10-12 07:27:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 08:33:57]  *** The last 200 lines of the pilot log: ***
[2025-10-12 08:33:57]  lfn=log.46676269._058871.job.log.tgz.1
[2025-10-12 08:33:57]  mtime=0
[2025-10-12 08:33:57]  protocol_id=None
[2025-10-12 08:33:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 08:33:57]  replicas=None
[2025-10-12 08:33:57]  scope=mc23_13p6TeV
[2025-10-12 08:33:57]  status=None
[2025-10-12 08:33:57]  status_code=0
[2025-10-12 08:33:57]  storage_token=
[2025-10-12 08:33:57]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6838452927/log.46676269._058871.job.log.tgz.1
[2025-10-12 08:33:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/83/59/log.46676269._058871.job.log.tgz.1
[2025-10-12 08:33:57]  workdir=None
[2025-10-12 08:33:57] ]
[2025-10-12 08:33:57] 2025-10-12 06:33:23,494 | INFO     | transferring file log.46676269._058871.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6838452927/log.46676269._058871.job.log.tgz.1 to /var/lib/boinc
[2025-10-12 08:33:57] 2025-10-12 06:33:23,494 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6838452927/log.46676269._058871.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.466762
[2025-10-12 08:33:57] 2025-10-12 06:33:23,500 | INFO     | adding to output.list: log.46676269._058871.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/83/59/log.46676269._058871.job.log.tg
[2025-10-12 08:33:57] 2025-10-12 06:33:23,500 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 08:33:57] 2025-10-12 06:33:23,500 | INFO     | summary of transferred files:
[2025-10-12 08:33:57] 2025-10-12 06:33:23,500 | INFO     |  -- lfn=log.46676269._058871.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 08:33:57] 2025-10-12 06:33:23,500 | INFO     | stage-out finished correctly
[2025-10-12 08:33:57] 2025-10-12 06:33:24,028 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 08:33:57] 2025-10-12 06:33:24,568 | INFO     | time since job start (3947s) is within the limit (172800.0s)
[2025-10-12 08:33:57] 2025-10-12 06:33:24,785 | INFO     | job 6838452927 has state=finished
[2025-10-12 08:33:57] 2025-10-12 06:33:24,786 | INFO     | preparing for final server update for job 6838452927 in state='finished'
[2025-10-12 08:33:57] 2025-10-12 06:33:24,786 | INFO     | this job has now completed (state=finished)
[2025-10-12 08:33:57] 2025-10-12 06:33:24,786 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 08:33:57] 2025-10-12 06:33:24,786 | INFO     | log transfer has been attempted: DONE
[2025-10-12 08:33:57] 2025-10-12 06:33:24,786 | INFO     | job 6838452927 has finished - writing final server update
[2025-10-12 08:33:57] 2025-10-12 06:33:24,786 | INFO     | total number of processed events: 400 (read)
[2025-10-12 08:33:57] 2025-10-12 06:33:24,787 | INFO     | executing command: lscpu
[2025-10-12 08:33:57] 2025-10-12 06:33:24,797 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 08:33:57] 2025-10-12 06:33:25,520 | INFO     | monitor loop #304: job 0:6838452927 is in state 'finished'
[2025-10-12 08:33:57] 2025-10-12 06:33:25,520 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 08:33:57] 2025-10-12 06:33:26,026 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 08:33:57] 2025-10-12 06:33:26,027 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 3983.4006666666664
[2025-10-12 08:33:57] 2025-10-12 06:33:26,029 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6838452927/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 08:33:57] 2025-10-12 06:33:26,029 | INFO     | extracted standard info from prmon json
[2025-10-12 08:33:57] 2025-10-12 06:33:26,029 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 08:33:57] 2025-10-12 06:33:26,029 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 08:33:57] 2025-10-12 06:33:26,029 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 08:33:57] 2025-10-12 06:33:26,029 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 08:33:57] 2025-10-12 06:33:26,030 | INFO     | fitting pss+swap vs Time
[2025-10-12 08:33:57] 2025-10-12 06:33:26,030 | INFO     | sum of square deviations: 60482994.5
[2025-10-12 08:33:57] 2025-10-12 06:33:26,030 | INFO     | sum of deviations: -3026444972.0
[2025-10-12 08:33:57] 2025-10-12 06:33:26,030 | INFO     | mean x: 1760248916.5
[2025-10-12 08:33:57] 2025-10-12 06:33:26,030 | INFO     | mean y: 2498325.8620689656
[2025-10-12 08:33:57] 2025-10-12 06:33:26,030 | INFO     | -- intersect: 88081743192.11739
[2025-10-12 08:33:57] 2025-10-12 06:33:26,030 | INFO     | intersect: 88081743192.11739
[2025-10-12 08:33:57] 2025-10-12 06:33:26,031 | INFO     | chi2: 0.013530741821699058
[2025-10-12 08:33:57] 2025-10-12 06:33:26,031 | INFO     | -- intersect: 88081743192.11739
[2025-10-12 08:33:57] 2025-10-12 06:33:26,031 | INFO     | current memory leak: -50.04 B/s (using 58 data points, chi2=0.01)
[2025-10-12 08:33:57] 2025-10-12 06:33:26,031 | INFO     | could have reported an average CPU frequency of 3960 MHz (6 samples)
[2025-10-12 08:33:57] 2025-10-12 06:33:26,031 | INFO     | ..............................
[2025-10-12 08:33:57] 2025-10-12 06:33:26,031 | INFO     | . Timing measurements:
[2025-10-12 08:33:57] 2025-10-12 06:33:26,031 | INFO     | . get job = 0 s
[2025-10-12 08:33:57] 2025-10-12 06:33:26,031 | INFO     | . initial setup = 1 s
[2025-10-12 08:33:57] 2025-10-12 06:33:26,031 | INFO     | . payload setup = 1 s
[2025-10-12 08:33:57] 2025-10-12 06:33:26,031 | INFO     | . stage-in = 0 s
[2025-10-12 08:33:57] 2025-10-12 06:33:26,031 | INFO     | . payload execution = 3928 s
[2025-10-12 08:33:57] 2025-10-12 06:33:26,031 | INFO     | . stage-out = 0 s
[2025-10-12 08:33:57] 2025-10-12 06:33:26,031 | INFO     | . log creation = 0 s
[2025-10-12 08:33:57] 2025-10-12 06:33:26,031 | INFO     | ..............................
[2025-10-12 08:33:57] 2025-10-12 06:33:26,071 | INFO     | 
[2025-10-12 08:33:57] 2025-10-12 06:33:26,071 | INFO     | job summary report
[2025-10-12 08:33:57] 2025-10-12 06:33:26,071 | INFO     | --------------------------------------------------
[2025-10-12 08:33:57] 2025-10-12 06:33:26,071 | INFO     | PanDA job id: 6838452927
[2025-10-12 08:33:57] 2025-10-12 06:33:26,071 | INFO     | task id: 46676269
[2025-10-12 08:33:57] 2025-10-12 06:33:26,071 | INFO     | errors: (none)
[2025-10-12 08:33:57] 2025-10-12 06:33:26,071 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 08:33:57] 2025-10-12 06:33:26,071 | INFO     | pilot state: finished 
[2025-10-12 08:33:57] 2025-10-12 06:33:26,071 | INFO     | transexitcode: 0
[2025-10-12 08:33:57] 2025-10-12 06:33:26,071 | INFO     | exeerrorcode: 0
[2025-10-12 08:33:57] 2025-10-12 06:33:26,071 | INFO     | exeerrordiag: 
[2025-10-12 08:33:57] 2025-10-12 06:33:26,071 | INFO     | exitcode: 0
[2025-10-12 08:33:57] 2025-10-12 06:33:26,071 | INFO     | exitmsg: OK
[2025-10-12 08:33:57] 2025-10-12 06:33:26,071 | INFO     | cpuconsumptiontime: 22441 s
[2025-10-12 08:33:57] 2025-10-12 06:33:26,071 | INFO     | nevents: 400
[2025-10-12 08:33:57] 2025-10-12 06:33:26,071 | INFO     | neventsw: 0
[2025-10-12 08:33:57] 2025-10-12 06:33:26,071 | INFO     | pid: 974761
[2025-10-12 08:33:57] 2025-10-12 06:33:26,071 | INFO     | pgrp: 974761
[2025-10-12 08:33:57] 2025-10-12 06:33:26,071 | INFO     | corecount: 6
[2025-10-12 08:33:57] 2025-10-12 06:33:26,071 | INFO     | event service: False
[2025-10-12 08:33:57] 2025-10-12 06:33:26,071 | INFO     | sizes: {0: 2348642, 1: 2348841, 2: 2349103, 11: 2349131, 3933: 2375100, 3934: 2384296, 3936: 2384434}
[2025-10-12 08:33:57] 2025-10-12 06:33:26,072 | INFO     | --------------------------------------------------
[2025-10-12 08:33:57] 2025-10-12 06:33:26,072 | INFO     | 
[2025-10-12 08:33:57] 2025-10-12 06:33:26,072 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-10-12 08:33:57] 2025-10-12 06:33:26,077 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 08:33:57] 2025-10-12 06:33:26,078 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 08:33:57] 2025-10-12 06:33:26,078 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 08:33:57] 2025-10-12 06:33:26,078 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 08:33:57] 2025-10-12 06:33:26,078 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 08:33:57] 2025-10-12 06:33:26,078 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 08:33:57] 2025-10-12 06:33:26,078 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 08:33:57] 2025-10-12 06:33:26,078 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 08:33:57] 2025-10-12 06:33:26,078 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 08:33:57] 2025-10-12 06:33:26,078 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 08:33:57] 2025-10-12 06:33:26,078 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 08:33:57] 2025-10-12 06:33:26,078 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 08:33:57] 2025-10-12 06:33:26,078 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 08:33:57] 2025-10-12 06:33:26,078 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 08:33:57] 2025-10-12 06:33:26,078 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 08:33:57] 2025-10-12 06:33:26,078 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 08:33:57] 2025-10-12 06:33:26,078 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 08:33:57] 2025-10-12 06:33:26,078 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 08:33:57] 2025-10-12 06:33:26,078 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 08:33:57] 2025-10-12 06:33:26,078 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 08:33:57] 2025-10-12 06:33:26,078 | INFO     | job 6838452927 has completed (purged errors)
[2025-10-12 08:33:57] 2025-10-12 06:33:26,078 | INFO     | overall cleanup function is called
[2025-10-12 08:33:57] 2025-10-12 06:33:27,084 | INFO     | --- collectZombieJob: --- 10, [974761]
[2025-10-12 08:33:57] 2025-10-12 06:33:27,084 | INFO     | zombie collector waiting for pid 974761
[2025-10-12 08:33:57] 2025-10-12 06:33:27,084 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 08:33:57] 2025-10-12 06:33:27,084 | INFO     | collected zombie processes
[2025-10-12 08:33:57] 2025-10-12 06:33:27,084 | INFO     | will attempt to kill all subprocesses of pid=974761
[2025-10-12 08:33:57] 2025-10-12 06:33:27,162 | INFO     | process IDs to be killed: [974761] (in reverse order)
[2025-10-12 08:33:57] 2025-10-12 06:33:27,178 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 08:33:57] 2025-10-12 06:33:27,178 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 08:33:57] 2025-10-12 06:33:27,180 | INFO     | did not find any defunct processes belonging to 974761
[2025-10-12 08:33:57] 2025-10-12 06:33:27,181 | INFO     | did not find any defunct processes belonging to 974761
[2025-10-12 08:33:57] 2025-10-12 06:33:27,181 | INFO     | ready for new job
[2025-10-12 08:33:57] 2025-10-12 06:33:27,181 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 08:33:57] 2025-10-12 06:33:27,181 | INFO     | ***************************************
[2025-10-12 08:33:57] 2025-10-12 06:33:27,181 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 08:33:57] 2025-10-12 06:33:27,181 | INFO     | ***************************************
[2025-10-12 08:33:57] 2025-10-12 06:33:27,181 | INFO     | 
[2025-10-12 08:33:57] 2025-10-12 06:33:27,182 | INFO     | architecture information:
[2025-10-12 08:33:57] 2025-10-12 06:33:27,182 | INFO     | executing command: cat /etc/os-release
[2025-10-12 08:33:57] 2025-10-12 06:33:27,185 | INFO     | cat /etc/os-release:
[2025-10-12 08:33:57] NAME="CentOS Linux"
[2025-10-12 08:33:57] VERSION="7 (Core)"
[2025-10-12 08:33:57] ID="centos"
[2025-10-12 08:33:57] ID_LIKE="rhel fedora"
[2025-10-12 08:33:57] VERSION_ID="7"
[2025-10-12 08:33:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 08:33:57] ANSI_COLOR="0;31"
[2025-10-12 08:33:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 08:33:57] HOME_URL="https://www.centos.org/"
[2025-10-12 08:33:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 08:33:57] 
[2025-10-12 08:33:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 08:33:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 08:33:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 08:33:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 08:33:57] 
[2025-10-12 08:33:57] 2025-10-12 06:33:27,186 | INFO     | ***************************************
[2025-10-12 08:33:57] 2025-10-12 06:33:27,688 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-10-12 08:33:57] 2025-10-12 06:33:27,694 | INFO     | sufficient remaining disk space (16962813952 B)
[2025-10-12 08:33:57] 2025-10-12 06:33:27,694 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 08:33:57] 2025-10-12 06:33:27,695 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 08:33:57] 2025-10-12 06:33:27,695 | INFO     | update_server=False
[2025-10-12 08:33:57] 2025-10-12 06:33:27,695 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 08:33:57] 2025-10-12 06:33:27,695 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 08:33:57] 2025-10-12 06:33:28,023 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 08:33:57] 2025-10-12 06:33:28,023 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 08:33:57] 2025-10-12 06:33:28,023 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 08:33:57] 2025-10-12 06:33:28,023 | INFO     | will abort loop
[2025-10-12 08:33:57] 2025-10-12 06:33:28,700 | INFO     | [job] retrieve thread has finished
[2025-10-12 08:33:57] 2025-10-12 06:33:28,700 | INFO     | [job] queue monitor thread has finished
[2025-10-12 08:33:57] 2025-10-12 06:33:28,734 | INFO     | [payload] validate_post thread has finished
[2025-10-12 08:33:57] 2025-10-12 06:33:28,755 | INFO     | job.realtimelogging is not enabled
[2025-10-12 08:33:57] 2025-10-12 06:33:28,795 | INFO     | all data control threads have been joined
[2025-10-12 08:33:57] 2025-10-12 06:33:28,831 | INFO     | all job control threads have been joined
[2025-10-12 08:33:57] 2025-10-12 06:33:28,896 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 08:33:57] 2025-10-12 06:33:28,986 | INFO     | all payload control threads have been joined
[2025-10-12 08:33:57] 2025-10-12 06:33:29,029 | INFO     | [job] job monitor thread has finished
[2025-10-12 08:33:57] 2025-10-12 06:33:29,057 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 08:33:57] 2025-10-12 06:33:29,302 | INFO     | [data] copytool_in thread has finished
[2025-10-12 08:33:57] 2025-10-12 06:33:29,311 | INFO     | [job] validate thread has finished
[2025-10-12 08:33:57] 2025-10-12 06:33:29,429 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 08:33:57] 2025-10-12 06:33:29,575 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 08:33:57] 2025-10-12 06:33:29,677 | INFO     | [payload] failed_post thread has finished
[2025-10-12 08:33:57] 2025-10-12 06:33:29,760 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 08:33:57] 2025-10-12 06:33:29,801 | INFO     | [data] control thread has finished
[2025-10-12 08:33:57] 2025-10-12 06:33:29,837 | INFO     | [job] control thread has finished
[2025-10-12 08:33:57] 2025-10-12 06:33:29,992 | INFO     | [payload] control thread has finished
[2025-10-12 08:33:57] 2025-10-12 06:33:30,105 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 08:33:57] 2025-10-12 06:33:31,063 | INFO     | [data] copytool_out thread has finished
[2025-10-12 08:33:57] 2025-10-12 06:33:34,110 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 08:33:57] 2025-10-12 06:33:42,875 | INFO     | [monitor] cgroup control has ended
[2025-10-12 08:33:57] 2025-10-12 06:33:44,300 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140125277845312)>', '<ExcThread(monitor, started 140124331415296)>']
[2025-10-12 08:33:57] 2025-10-12 06:33:49,325 | INFO     | all workflow threads have been joined
[2025-10-12 08:33:57] 2025-10-12 06:33:49,325 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 08:33:57] 2025-10-12 06:33:49,326 | INFO     | traces error code: 0
[2025-10-12 08:33:57] 2025-10-12 06:33:49,326 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 08:33:57] 2025-10-12 06:33:57,709 | INFO     | PID=967374 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 08:33:57] 2025-10-12 06:33:57,709 | INFO     | .. there are 3 such processes running
[2025-10-12 08:33:57] 2025-10-12 06:33:57,709 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 08:33:57] 2025-10-12 06:33:57,709 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 08:33:57] 2025-10-12 06:33:57,709 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 08:33:57] 2025-10-12 06:33:57,709 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 08:33:57] 2025-10-12 06:33:57,709 | INFO     | [monitor] control thread has ended
[2025-10-12 08:33:57] 2025-10-12 06:33:57,765 [wrapper] ==== pilot stdout END ====
[2025-10-12 08:33:57] 2025-10-12 06:33:57,765 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 08:33:57] 2025-10-12 06:33:57,766 [wrapper] pilotpid: 967374
[2025-10-12 08:33:57] 2025-10-12 06:33:57,767 [wrapper] Pilot exit status: 0
[2025-10-12 08:33:57] 2025-10-12 06:33:57,771 [wrapper] pandaids: 6838452927
[2025-10-12 08:33:57] 2025-10-12 06:33:57,779 [wrapper] cleanup supervisor_pilot 1031177 967375
[2025-10-12 08:33:57] 2025-10-12 06:33:57,780 [wrapper] Test setup, not cleaning
[2025-10-12 08:33:57] 2025-10-12 06:33:57,780 [wrapper] apfmon messages muted
[2025-10-12 08:33:57] 2025-10-12 06:33:57,781 [wrapper] ==== wrapper stdout END ====
[2025-10-12 08:33:57] 2025-10-12 06:33:57,782 [wrapper] ==== wrapper stderr END ====
[2025-10-12 08:33:57]  *** Error codes and diagnostics ***
[2025-10-12 08:33:57]     "exeErrorCode": 0,
[2025-10-12 08:33:57]     "exeErrorDiag": "",
[2025-10-12 08:33:57]     "pilotErrorCode": 0,
[2025-10-12 08:33:57]     "pilotErrorDiag": "",
[2025-10-12 08:33:57]  *** Listing of results directory ***
[2025-10-12 08:33:57] total 411585
[2025-10-12 08:33:57] -rw-r--r-- 1 boinc boinc    557409 Oct 11 15:56 pilot3.tar.gz
[2025-10-12 08:33:57] -rwx------ 1 boinc boinc     36292 Oct 11 16:00 runpilot2-wrapper.sh
[2025-10-12 08:33:57] -rw-r--r-- 1 boinc boinc      5112 Oct 11 16:00 queuedata.json
[2025-10-12 08:33:57] -rw-r--r-- 1 boinc boinc       100 Oct 12 07:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 08:33:57] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 07:27 run_atlas
[2025-10-12 08:33:57] -rw-r--r-- 1 boinc boinc       105 Oct 12 07:27 job.xml
[2025-10-12 08:33:57] -rw-r--r-- 2 boinc boinc     15120 Oct 12 07:27 start_atlas.sh
[2025-10-12 08:33:57] drwxrwx--x 2 boinc boinc         5 Oct 12 07:27 shared
[2025-10-12 08:33:57] -rw-r--r-- 2 boinc boinc    569675 Oct 12 07:27 input.tar.gz
[2025-10-12 08:33:57] -rw-r--r-- 1 boinc boinc      6795 Oct 12 07:27 init_data.xml
[2025-10-12 08:33:57] -rw-r--r-- 2 boinc boinc 220543418 Oct 12 07:27 EVNT.46676267._002360.pool.root.1
[2025-10-12 08:33:57] -rw-r--r-- 1 boinc boinc         0 Oct 12 07:27 boinc_lockfile
[2025-10-12 08:33:57] -rw-r--r-- 1 boinc boinc      2549 Oct 12 07:27 pandaJob.out
[2025-10-12 08:33:57] -rw------- 1 boinc boinc    975528 Oct 12 07:27 agis_schedconf.cvmfs.json
[2025-10-12 08:33:57] -rw------- 1 boinc boinc   1560580 Oct 12 07:27 agis_ddmendpoints.agis.ALL.json
[2025-10-12 08:33:57] drwx------ 5 boinc boinc        22 Oct 12 07:27 pilot3
[2025-10-12 08:33:57] -rw------- 1 boinc boinc 198986043 Oct 12 08:33 HITS.46676269._058871.pool.root.1
[2025-10-12 08:33:57] -rw------- 1 boinc boinc        95 Oct 12 08:33 pilot_heartbeat.json
[2025-10-12 08:33:57] -rw------- 1 boinc boinc      1035 Oct 12 08:33 memory_monitor_summary.json
[2025-10-12 08:33:57] -rw------- 1 boinc boinc    301661 Oct 12 08:33 log.46676269._058871.job.log.tgz.1
[2025-10-12 08:33:57] -rw------- 1 boinc boinc      7765 Oct 12 08:33 heartbeat.json
[2025-10-12 08:33:57] -rw-r--r-- 1 boinc boinc       529 Oct 12 08:33 boinc_task_state.xml
[2025-10-12 08:33:57] -rw-r--r-- 1 boinc boinc        27 Oct 12 08:33 wrapper_checkpoint.txt
[2025-10-12 08:33:57] -rw-r--r-- 1 boinc boinc      8192 Oct 12 08:33 boinc_mmap_file
[2025-10-12 08:33:57] -rw------- 1 boinc boinc       821 Oct 12 08:33 pilotlog.txt
[2025-10-12 08:33:57] -rw------- 1 boinc boinc    603521 Oct 12 08:33 log.46676269._058871.job.log.1
[2025-10-12 08:33:57] -rw-r--r-- 1 boinc boinc      8802 Oct 12 08:33 runtime_log.err
[2025-10-12 08:33:57] -rw-r--r-- 1 boinc boinc       620 Oct 12 08:33 runtime_log
[2025-10-12 08:33:57] -rw------- 1 boinc boinc    921600 Oct 12 08:33 result.tar.gz
[2025-10-12 08:33:57] -rw------- 1 boinc boinc       657 Oct 12 08:33 PTaMDmzJpR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMbgNDmUBpDgm.diag
[2025-10-12 08:33:57] -rw------- 1 boinc boinc       357 Oct 12 08:33 output.list
[2025-10-12 08:33:57] -rw-r--r-- 1 boinc boinc     20660 Oct 12 08:33 stderr.txt
[2025-10-12 08:33:57] HITS file was successfully produced:
[2025-10-12 08:33:57] -rw------- 1 boinc boinc 198986043 Oct 12 08:33 shared/HITS.pool.root.1
[2025-10-12 08:33:57]  *** Contents of shared directory: ***
[2025-10-12 08:33:57] total 410524
[2025-10-12 08:33:57] -rw-r--r-- 2 boinc boinc     15120 Oct 12 07:27 start_atlas.sh
[2025-10-12 08:33:57] -rw-r--r-- 2 boinc boinc    569675 Oct 12 07:27 input.tar.gz
[2025-10-12 08:33:57] -rw-r--r-- 2 boinc boinc 220543418 Oct 12 07:27 ATLAS.root_0
[2025-10-12 08:33:57] -rw------- 1 boinc boinc 198986043 Oct 12 08:33 HITS.pool.root.1
[2025-10-12 08:33:57] -rw------- 1 boinc boinc    921600 Oct 12 08:33 result.tar.gz
08:33:59 (963151): run_atlas exited; CPU time 22487.470641
08:33:59 (963151): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN