Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:43:35 (19172): wrapper (7.7.26015): starting
17:43:35 (19172): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 17:43:35] Arguments: --nthreads 8
[2025-10-11 17:43:35] Threads: 8
[2025-10-11 17:43:35] Checking for CVMFS
[2025-10-11 17:43:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 17:43:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 17:43:35] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 17:43:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 17:43:35] 2.11.2.0 3643 199 53848 151597 0 188 9674078 18432000 1833 130560 0 420499 99.996 5402 30693 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 17:43:35] CVMFS is ok
[2025-10-11 17:43:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 17:43:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 17:43:35] Further information can be found at the LHC@home message board.
[2025-10-11 17:43:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 17:43:35] Checking for apptainer binary...
[2025-10-11 17:43:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 17:43:35] Running /usr/bin/apptainer --version
[2025-10-11 17:43:35] apptainer version 1.3.2-1.el7
[2025-10-11 17:43:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 17:43:36] c-206-15.aglt2.org
[2025-10-11 17:43:36] apptainer works
[2025-10-11 17:43:36] Set ATHENA_PROC_NUMBER=8
[2025-10-11 17:43:36] Set ATHENA_CORE_NUMBER=8
[2025-10-11 17:43:36] Starting ATLAS job with PandaID=6838632984
[2025-10-11 17:43:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 20:44:31]  *** The last 200 lines of the pilot log: ***
[2025-10-11 20:44:31] 2025-10-12 00:43:59,244 | INFO     | -- intersect: -28028177342.941612
[2025-10-11 20:44:31] 2025-10-12 00:43:59,244 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-11 20:44:31] 2025-10-12 00:43:59,244 | INFO     | intersect: -28028177342.941612
[2025-10-11 20:44:31] 2025-10-12 00:43:59,245 | INFO     | chi2: 1.4676268304081337
[2025-10-11 20:44:31] 2025-10-12 00:43:59,245 | INFO     | sum of square deviations: 1577789583.0
[2025-10-11 20:44:31] 2025-10-12 00:43:59,246 | INFO     | sum of deviations: 26383892599.500004
[2025-10-11 20:44:31] 2025-10-12 00:43:59,246 | INFO     | mean x: 1760224267.5
[2025-10-11 20:44:31] 2025-10-12 00:43:59,246 | INFO     | mean y: 2460548.1220930233
[2025-10-11 20:44:31] 2025-10-12 00:43:59,246 | INFO     | -- intersect: -29432115852.395035
[2025-10-11 20:44:31] 2025-10-12 00:43:59,247 | INFO     | intersect: -29432115852.395035
[2025-10-11 20:44:31] 2025-10-12 00:43:59,247 | INFO     | chi2: 1.4687196952874586
[2025-10-11 20:44:31] 2025-10-12 00:43:59,247 | INFO     | current chi2=1.4687196952874586 (change=-0.07446476561218233 %)
[2025-10-11 20:44:31] 2025-10-12 00:43:59,247 | INFO     | right removable region: 171
[2025-10-11 20:44:31] 2025-10-12 00:43:59,247 | INFO     | sum of square deviations: 1577789583.0
[2025-10-11 20:44:31] 2025-10-12 00:43:59,248 | INFO     | sum of deviations: -716651393.5000011
[2025-10-11 20:44:31] 2025-10-12 00:43:59,248 | INFO     | mean x: 1760224572.5
[2025-10-11 20:44:31] 2025-10-12 00:43:59,248 | INFO     | mean y: 2491538.0406976743
[2025-10-11 20:44:31] 2025-10-12 00:43:59,249 | INFO     | -- intersect: 802007142.87599
[2025-10-11 20:44:31] 2025-10-12 00:43:59,249 | INFO     | intersect: 802007142.87599
[2025-10-11 20:44:31] 2025-10-12 00:43:59,249 | INFO     | chi2: 0.024611413744168913
[2025-10-11 20:44:31] 2025-10-12 00:43:59,249 | INFO     | current chi2=0.024611413744168913 (change=98.32304689215006 %)
[2025-10-11 20:44:31] 2025-10-12 00:43:59,249 | INFO     | sum of square deviations: 1444149868.0
[2025-10-11 20:44:31] 2025-10-12 00:43:59,250 | INFO     | sum of deviations: -1990930016.9999993
[2025-10-11 20:44:31] 2025-10-12 00:43:59,250 | INFO     | mean x: 1760224725.0
[2025-10-11 20:44:31] 2025-10-12 00:43:59,251 | INFO     | mean y: 2492946.2694610776
[2025-10-11 20:44:31] 2025-10-12 00:43:59,251 | INFO     | -- intersect: 2429169234.736268
[2025-10-11 20:44:31] 2025-10-12 00:43:59,251 | INFO     | intersect: 2429169234.736268
[2025-10-11 20:44:31] 2025-10-12 00:43:59,251 | INFO     | chi2: 0.010757200581081029
[2025-10-11 20:44:31] 2025-10-12 00:43:59,251 | INFO     | current chi2=0.010757200581081029 (change=56.29182178277065 %)
[2025-10-11 20:44:31] 2025-10-12 00:43:59,252 | INFO     | sum of square deviations: 1318277740.5
[2025-10-11 20:44:31] 2025-10-12 00:43:59,252 | INFO     | sum of deviations: -940896970.4999995
[2025-10-11 20:44:31] 2025-10-12 00:43:59,252 | INFO     | mean x: 1760224877.5
[2025-10-11 20:44:31] 2025-10-12 00:43:59,253 | INFO     | mean y: 2491670.475308642
[2025-10-11 20:44:31] 2025-10-12 00:43:59,253 | INFO     | -- intersect: 1258820442.2941504
[2025-10-11 20:44:31] 2025-10-12 00:43:59,253 | INFO     | intersect: 1258820442.2941504
[2025-10-11 20:44:31] 2025-10-12 00:43:59,253 | INFO     | chi2: 0.009674641110204326
[2025-10-11 20:44:31] 2025-10-12 00:43:59,253 | INFO     | current chi2=0.009674641110204326 (change=10.063579857204004 %)
[2025-10-11 20:44:31] 2025-10-12 00:43:59,253 | INFO     | left removable region: 30
[2025-10-11 20:44:31] 2025-10-12 00:43:59,254 | INFO     | sum of square deviations: 869188390.0
[2025-10-11 20:44:31] 2025-10-12 00:43:59,254 | INFO     | sum of deviations: 1716029186.0
[2025-10-11 20:44:31] 2025-10-12 00:43:59,254 | INFO     | mean x: 1760225152.0
[2025-10-11 20:44:31] 2025-10-12 00:43:59,255 | INFO     | mean y: 2487385.489361702
[2025-10-11 20:44:31] 2025-10-12 00:43:59,255 | INFO     | -- intersect: -3472705989.7503676
[2025-10-11 20:44:31] 2025-10-12 00:43:59,255 | INFO     | intersect: -3472705989.7503676
[2025-10-11 20:44:31] 2025-10-12 00:43:59,255 | INFO     | chi2: 9.538331243759932e-05
[2025-10-11 20:44:31] 2025-10-12 00:43:59,255 | INFO     | size of work directory /tmp/boinchome/slots/1/PanDA_Pilot-6838632984: 4002339 B (within 2537553920 B limit)
[2025-10-11 20:44:31] 2025-10-12 00:43:59,255 | INFO     | -- intersect: -3472705989.7503676
[2025-10-11 20:44:31] 2025-10-12 00:43:59,256 | INFO     | current memory leak: 1.97 B/s (using 141 data points, chi2=0.00)
[2025-10-11 20:44:31] 2025-10-12 00:43:59,256 | INFO     | pfn file=/tmp/boinchome/slots/1/PanDA_Pilot-6838632984/HITS.46676269._061193.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-11 20:44:31] 2025-10-12 00:43:59,256 | INFO     | total size of present files: 0 B (workdir size: 4002339 B)
[2025-10-11 20:44:31] 2025-10-12 00:43:59,256 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/1/PanDA_Pilot-6838632984/HITS.46676269._061193.pool.root.1 since it does not exist
[2025-10-11 20:44:31] 2025-10-12 00:43:59,256 | INFO     | could have reported an average CPU frequency of 2484 MHz (9 samples)
[2025-10-11 20:44:31] 2025-10-12 00:43:59,257 | INFO     | ..............................
[2025-10-11 20:44:31] 2025-10-12 00:43:59,257 | INFO     | . Timing measurements:
[2025-10-11 20:44:31] 2025-10-12 00:43:59,257 | INFO     | . get job = 0 s
[2025-10-11 20:44:31] 2025-10-12 00:43:59,257 | INFO     | . initial setup = 2 s
[2025-10-11 20:44:31] 2025-10-12 00:43:59,257 | INFO     | . payload setup = 4 s
[2025-10-11 20:44:31] 2025-10-12 00:43:59,257 | INFO     | . stage-in = 0 s
[2025-10-11 20:44:31] 2025-10-12 00:43:59,257 | INFO     | . payload execution = 10782 s
[2025-10-11 20:44:31] 2025-10-12 00:43:59,257 | INFO     | . stage-out = 1 s
[2025-10-11 20:44:31] 2025-10-12 00:43:59,257 | INFO     | . log creation = 0 s
[2025-10-11 20:44:31] 2025-10-12 00:43:59,258 | INFO     | ..............................
[2025-10-11 20:44:31] 2025-10-12 00:43:59,332 | INFO     | 
[2025-10-11 20:44:31] 2025-10-12 00:43:59,333 | INFO     | job summary report
[2025-10-11 20:44:31] 2025-10-12 00:43:59,333 | INFO     | --------------------------------------------------
[2025-10-11 20:44:31] 2025-10-12 00:43:59,333 | INFO     | PanDA job id: 6838632984
[2025-10-11 20:44:31] 2025-10-12 00:43:59,333 | INFO     | task id: 46676269
[2025-10-11 20:44:31] 2025-10-12 00:43:59,334 | INFO     | errors: (none)
[2025-10-11 20:44:31] 2025-10-12 00:43:59,334 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 20:44:31] 2025-10-12 00:43:59,334 | INFO     | pilot state: finished 
[2025-10-11 20:44:31] 2025-10-12 00:43:59,334 | INFO     | transexitcode: 0
[2025-10-11 20:44:31] 2025-10-12 00:43:59,335 | INFO     | exeerrorcode: 0
[2025-10-11 20:44:31] 2025-10-12 00:43:59,335 | INFO     | exeerrordiag: 
[2025-10-11 20:44:31] 2025-10-12 00:43:59,335 | INFO     | exitcode: 0
[2025-10-11 20:44:31] 2025-10-12 00:43:59,335 | INFO     | exitmsg: OK
[2025-10-11 20:44:31] 2025-10-12 00:43:59,336 | INFO     | cpuconsumptiontime: 81907 s
[2025-10-11 20:44:31] 2025-10-12 00:43:59,336 | INFO     | nevents: 400
[2025-10-11 20:44:31] 2025-10-12 00:43:59,336 | INFO     | neventsw: 0
[2025-10-11 20:44:31] 2025-10-12 00:43:59,336 | INFO     | pid: 29343
[2025-10-11 20:44:31] 2025-10-12 00:43:59,336 | INFO     | pgrp: 29343
[2025-10-11 20:44:31] 2025-10-12 00:43:59,336 | INFO     | corecount: 8
[2025-10-11 20:44:31] 2025-10-12 00:43:59,337 | INFO     | event service: False
[2025-10-11 20:44:31] 2025-10-12 00:43:59,337 | INFO     | sizes: {0: 2348686, 1: 2348885, 4: 2349147, 12: 2349175, 10791: 2378077, 10793: 2387075, 10794: 2387259, 10797: 2387545}
[2025-10-11 20:44:31] 2025-10-12 00:43:59,337 | INFO     | --------------------------------------------------
[2025-10-11 20:44:31] 2025-10-12 00:43:59,337 | INFO     | 
[2025-10-11 20:44:31] 2025-10-12 00:43:59,337 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-11 20:44:31] 2025-10-12 00:43:59,354 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 20:44:31] 2025-10-12 00:43:59,354 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 20:44:31] 2025-10-12 00:43:59,354 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 20:44:31] 2025-10-12 00:43:59,355 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 20:44:31] 2025-10-12 00:43:59,355 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 20:44:31] 2025-10-12 00:43:59,355 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 20:44:31] 2025-10-12 00:43:59,355 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 20:44:31] 2025-10-12 00:43:59,355 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 20:44:31] 2025-10-12 00:43:59,355 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 20:44:31] 2025-10-12 00:43:59,356 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 20:44:31] 2025-10-12 00:43:59,356 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 20:44:31] 2025-10-12 00:43:59,356 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 20:44:31] 2025-10-12 00:43:59,356 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 20:44:31] 2025-10-12 00:43:59,356 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 20:44:31] 2025-10-12 00:43:59,356 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 20:44:31] 2025-10-12 00:43:59,356 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 20:44:31] 2025-10-12 00:43:59,356 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 20:44:31] 2025-10-12 00:43:59,356 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 20:44:31] 2025-10-12 00:43:59,357 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 20:44:31] 2025-10-12 00:43:59,357 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 20:44:31] 2025-10-12 00:43:59,357 | INFO     | job 6838632984 has completed (purged errors)
[2025-10-11 20:44:31] 2025-10-12 00:43:59,357 | INFO     | overall cleanup function is called
[2025-10-11 20:44:31] 2025-10-12 00:43:59,449 | INFO     | number of running child processes to parent process 29343: 1
[2025-10-11 20:44:31] 2025-10-12 00:43:59,449 | INFO     | maximum number of monitored processes: 6
[2025-10-11 20:44:31] 2025-10-12 00:43:59,449 | INFO     | aborting job monitoring since job object (job id=6838632984) has expired
[2025-10-11 20:44:31] 2025-10-12 00:44:00,365 | INFO     | --- collectZombieJob: --- 10, [29343]
[2025-10-11 20:44:31] 2025-10-12 00:44:00,366 | INFO     | zombie collector waiting for pid 29343
[2025-10-11 20:44:31] 2025-10-12 00:44:00,366 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 20:44:31] 2025-10-12 00:44:00,366 | INFO     | collected zombie processes
[2025-10-11 20:44:31] 2025-10-12 00:44:00,366 | INFO     | will attempt to kill all subprocesses of pid=29343
[2025-10-11 20:44:31] 2025-10-12 00:44:00,470 | INFO     | process IDs to be killed: [29343] (in reverse order)
[2025-10-11 20:44:31] 2025-10-12 00:44:00,511 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 20:44:31] 2025-10-12 00:44:00,512 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 20:44:31] 2025-10-12 00:44:00,514 | INFO     | did not find any defunct processes belonging to 29343
[2025-10-11 20:44:31] 2025-10-12 00:44:00,517 | INFO     | did not find any defunct processes belonging to 29343
[2025-10-11 20:44:31] 2025-10-12 00:44:00,517 | INFO     | ready for new job
[2025-10-11 20:44:31] 2025-10-12 00:44:00,517 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 20:44:31] 2025-10-12 00:44:00,518 | INFO     | ***************************************
[2025-10-11 20:44:31] 2025-10-12 00:44:00,518 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 20:44:31] 2025-10-12 00:44:00,519 | INFO     | ***************************************
[2025-10-11 20:44:31] 2025-10-12 00:44:00,519 | INFO     | 
[2025-10-11 20:44:31] 2025-10-12 00:44:00,519 | INFO     | architecture information:
[2025-10-11 20:44:31] 2025-10-12 00:44:00,520 | INFO     | executing command: cat /etc/os-release
[2025-10-11 20:44:31] 2025-10-12 00:44:00,531 | INFO     | cat /etc/os-release:
[2025-10-11 20:44:31] NAME="CentOS Linux"
[2025-10-11 20:44:31] VERSION="7 (Core)"
[2025-10-11 20:44:31] ID="centos"
[2025-10-11 20:44:31] ID_LIKE="rhel fedora"
[2025-10-11 20:44:31] VERSION_ID="7"
[2025-10-11 20:44:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 20:44:31] ANSI_COLOR="0;31"
[2025-10-11 20:44:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 20:44:31] HOME_URL="https://www.centos.org/"
[2025-10-11 20:44:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 20:44:31] 
[2025-10-11 20:44:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 20:44:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 20:44:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 20:44:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 20:44:31] 
[2025-10-11 20:44:31] 2025-10-12 00:44:00,532 | INFO     | ***************************************
[2025-10-11 20:44:31] 2025-10-12 00:44:01,035 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-11 20:44:31] 2025-10-12 00:44:01,047 | INFO     | sufficient remaining disk space (27678212096 B)
[2025-10-11 20:44:31] 2025-10-12 00:44:01,047 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 20:44:31] 2025-10-12 00:44:01,047 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 20:44:31] 2025-10-12 00:44:01,047 | INFO     | update_server=False
[2025-10-11 20:44:31] 2025-10-12 00:44:01,047 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 20:44:31] 2025-10-12 00:44:01,047 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 20:44:31] 2025-10-12 00:44:01,048 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 20:44:31] 2025-10-12 00:44:01,048 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 20:44:31] 2025-10-12 00:44:01,048 | INFO     | aborting loop
[2025-10-11 20:44:31] 2025-10-12 00:44:01,065 | INFO     | all job control threads have been joined
[2025-10-11 20:44:31] 2025-10-12 00:44:01,550 | INFO     | all data control threads have been joined
[2025-10-11 20:44:31] 2025-10-12 00:44:02,009 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 20:44:31] 2025-10-12 00:44:02,050 | INFO     | [job] retrieve thread has finished
[2025-10-11 20:44:31] 2025-10-12 00:44:02,053 | INFO     | [job] queue monitor thread has finished
[2025-10-11 20:44:31] 2025-10-12 00:44:02,054 | INFO     | [job] job monitor thread has finished
[2025-10-11 20:44:31] 2025-10-12 00:44:02,070 | INFO     | [job] control thread has finished
[2025-10-11 20:44:31] 2025-10-12 00:44:02,260 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 20:44:31] 2025-10-12 00:44:02,360 | INFO     | [data] copytool_in thread has finished
[2025-10-11 20:44:31] 2025-10-12 00:44:02,364 | INFO     | [job] validate thread has finished
[2025-10-11 20:44:31] 2025-10-12 00:44:02,444 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 20:44:31] 2025-10-12 00:44:02,464 | INFO     | all payload control threads have been joined
[2025-10-11 20:44:31] 2025-10-12 00:44:02,555 | INFO     | [data] control thread has finished
[2025-10-11 20:44:31] 2025-10-12 00:44:03,054 | INFO     | [data] copytool_out thread has finished
[2025-10-11 20:44:31] 2025-10-12 00:44:03,096 | INFO     | [payload] validate_post thread has finished
[2025-10-11 20:44:31] 2025-10-12 00:44:03,202 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 20:44:31] 2025-10-12 00:44:03,294 | INFO     | [payload] failed_post thread has finished
[2025-10-11 20:44:31] 2025-10-12 00:44:03,310 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 20:44:31] 2025-10-12 00:44:03,470 | INFO     | [payload] control thread has finished
[2025-10-11 20:44:31] 2025-10-12 00:44:04,074 | INFO     | [monitor] cgroup control has ended
[2025-10-11 20:44:31] 2025-10-12 00:44:06,014 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 20:44:31] 2025-10-12 00:44:06,791 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140413569730368)>', '<ExcThread(monitor, started 140413126035200)>']
[2025-10-11 20:44:31] 2025-10-12 00:44:11,792 | INFO     | all workflow threads have been joined
[2025-10-11 20:44:31] 2025-10-12 00:44:11,792 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 20:44:31] 2025-10-12 00:44:11,792 | INFO     | traces error code: 0
[2025-10-11 20:44:31] 2025-10-12 00:44:11,792 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 20:44:31] 2025-10-12 00:44:31,554 | INFO     | PID=22844 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 20:44:31] 2025-10-12 00:44:31,554 | INFO     | .. there are 3 such processes running
[2025-10-11 20:44:31] 2025-10-12 00:44:31,554 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 20:44:31] 2025-10-12 00:44:31,554 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 20:44:31] 2025-10-12 00:44:31,554 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 20:44:31] 2025-10-12 00:44:31,554 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 20:44:31] 2025-10-12 00:44:31,554 | INFO     | [monitor] control thread has ended
[2025-10-11 20:44:31] 2025-10-12 00:44:31,635 [wrapper] ==== pilot stdout END ====
[2025-10-11 20:44:31] 2025-10-12 00:44:31,637 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 20:44:31] 2025-10-12 00:44:31,639 [wrapper] pilotpid: 22844
[2025-10-11 20:44:31] 2025-10-12 00:44:31,642 [wrapper] Pilot exit status: 0
[2025-10-11 20:44:31] 2025-10-12 00:44:31,652 [wrapper] pandaids: 6838632984
[2025-10-11 20:44:31] 2025-10-12 00:44:31,680 [wrapper] cleanup supervisor_pilot  6525 22845
[2025-10-11 20:44:31] 2025-10-12 00:44:31,683 [wrapper] Test setup, not cleaning
[2025-10-11 20:44:31] 2025-10-12 00:44:31,685 [wrapper] apfmon messages muted
[2025-10-11 20:44:31] 2025-10-12 00:44:31,688 [wrapper] ==== wrapper stdout END ====
[2025-10-11 20:44:31] 2025-10-12 00:44:31,691 [wrapper] ==== wrapper stderr END ====
[2025-10-11 20:44:31]  *** Error codes and diagnostics ***
[2025-10-11 20:44:31]     "exeErrorCode": 0,
[2025-10-11 20:44:31]     "exeErrorDiag": "",
[2025-10-11 20:44:31]     "pilotErrorCode": 0,
[2025-10-11 20:44:31]     "pilotErrorDiag": "",
[2025-10-11 20:44:31]  *** Listing of results directory ***
[2025-10-11 20:44:31] total 405412
[2025-10-11 20:44:31] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 12:20 pilot3.tar.gz
[2025-10-11 20:44:31] -rwx------ 1 boincer umatlas     36292 Oct 11 12:40 runpilot2-wrapper.sh
[2025-10-11 20:44:31] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 12:40 queuedata.json
[2025-10-11 20:44:31] -rw-r--r-- 1 boincer umatlas       100 Oct 11 17:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 20:44:31] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 17:43 run_atlas
[2025-10-11 20:44:31] -rw-r--r-- 1 boincer umatlas       105 Oct 11 17:43 job.xml
[2025-10-11 20:44:31] -rw-r--r-- 2 boincer umatlas 220466347 Oct 11 17:43 EVNT.46676267._002457.pool.root.1
[2025-10-11 20:44:31] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 17:43 start_atlas.sh
[2025-10-11 20:44:31] drwxrwx--x 2 boincer umatlas      4096 Oct 11 17:43 shared
[2025-10-11 20:44:31] -rw-r--r-- 2 boincer umatlas    569675 Oct 11 17:43 input.tar.gz
[2025-10-11 20:44:31] -rw-r--r-- 1 boincer umatlas         0 Oct 11 17:43 boinc_lockfile
[2025-10-11 20:44:31] -rw-r--r-- 1 boincer umatlas      2550 Oct 11 17:43 pandaJob.out
[2025-10-11 20:44:31] -rw------- 1 boincer umatlas    975528 Oct 11 17:43 agis_schedconf.cvmfs.json
[2025-10-11 20:44:31] drwx------ 5 boincer umatlas      4096 Oct 11 17:43 pilot3
[2025-10-11 20:44:31] -rw-r--r-- 1 boincer umatlas      5951 Oct 11 20:40 init_data.xml
[2025-10-11 20:44:31] -rw------- 1 boincer umatlas 186898025 Oct 11 20:43 HITS.46676269._061193.pool.root.1
[2025-10-11 20:44:31] -rw-r--r-- 1 boincer umatlas       530 Oct 11 20:43 boinc_task_state.xml
[2025-10-11 20:44:31] -rw------- 1 boincer umatlas        95 Oct 11 20:43 pilot_heartbeat.json
[2025-10-11 20:44:31] -rw------- 1 boincer umatlas      1053 Oct 11 20:43 memory_monitor_summary.json
[2025-10-11 20:44:31] -rw------- 1 boincer umatlas   1560580 Oct 11 20:43 agis_ddmendpoints.agis.ALL.json
[2025-10-11 20:44:31] -rw------- 1 boincer umatlas    426274 Oct 11 20:43 log.46676269._061193.job.log.tgz.1
[2025-10-11 20:44:31] -rw------- 1 boincer umatlas      7854 Oct 11 20:43 heartbeat.json
[2025-10-11 20:44:31] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 20:44 boinc_mmap_file
[2025-10-11 20:44:31] -rw-r--r-- 1 boincer umatlas        28 Oct 11 20:44 wrapper_checkpoint.txt
[2025-10-11 20:44:31] -rw------- 1 boincer umatlas       820 Oct 11 20:44 pilotlog.txt
[2025-10-11 20:44:31] -rw------- 1 boincer umatlas   1514053 Oct 11 20:44 log.46676269._061193.job.log.1
[2025-10-11 20:44:31] -rw------- 1 boincer umatlas       357 Oct 11 20:44 output.list
[2025-10-11 20:44:31] -rw-r--r-- 1 boincer umatlas       620 Oct 11 20:44 runtime_log
[2025-10-11 20:44:31] -rw------- 1 boincer umatlas   1955840 Oct 11 20:44 result.tar.gz
[2025-10-11 20:44:31] -rw-r--r-- 1 boincer umatlas      8704 Oct 11 20:44 runtime_log.err
[2025-10-11 20:44:31] -rw------- 1 boincer umatlas       661 Oct 11 20:44 HYbLDmporR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDzgNDmfxGiQn.diag
[2025-10-11 20:44:31] -rw-r--r-- 1 boincer umatlas     21333 Oct 11 20:44 stderr.txt
[2025-10-11 20:44:31] HITS file was successfully produced:
[2025-10-11 20:44:31] -rw------- 1 boincer umatlas 186898025 Oct 11 20:43 shared/HITS.pool.root.1
[2025-10-11 20:44:31]  *** Contents of shared directory: ***
[2025-10-11 20:44:31] total 400312
[2025-10-11 20:44:31] -rw-r--r-- 2 boincer umatlas 220466347 Oct 11 17:43 ATLAS.root_0
[2025-10-11 20:44:31] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 17:43 start_atlas.sh
[2025-10-11 20:44:31] -rw-r--r-- 2 boincer umatlas    569675 Oct 11 17:43 input.tar.gz
[2025-10-11 20:44:31] -rw------- 1 boincer umatlas 186898025 Oct 11 20:43 HITS.pool.root.1
[2025-10-11 20:44:31] -rw------- 1 boincer umatlas   1955840 Oct 11 20:44 result.tar.gz
20:44:33 (19172): run_atlas exited; CPU time 82039.792931
20:44:33 (19172): called boinc_finish(0)

</stderr_txt>
]]>

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