Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:39:33 (1357): wrapper (7.7.26015): starting
17:39:33 (1357): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 17:39:33] Arguments: --nthreads 12
[2025-10-11 17:39:33] Threads: 12
[2025-10-11 17:39:33] Checking for CVMFS
[2025-10-11 17:39:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 17:39:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 17:39:33] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 17:39:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 17:39:33] 2.11.2.0 3081 221946 101120 151597 0 57 14091635 20275200 1 130560 1 107785375 99.983 13128396 12455 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 17:39:33] CVMFS is ok
[2025-10-11 17:39:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 17:39:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 17:39:33] Further information can be found at the LHC@home message board.
[2025-10-11 17:39:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 17:39:33] Checking for apptainer binary...
[2025-10-11 17:39:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 17:39:33] Running /usr/bin/apptainer --version
[2025-10-11 17:39:33] apptainer version 1.3.2-1.el7
[2025-10-11 17:39:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 17:39:35] c-205-29.aglt2.org
[2025-10-11 17:39:35] apptainer works
[2025-10-11 17:39:35] Set ATHENA_PROC_NUMBER=12
[2025-10-11 17:39:35] Set ATHENA_CORE_NUMBER=12
[2025-10-11 17:39:35] Starting ATLAS job with PandaID=6838454042
[2025-10-11 17:39:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 18:50:03]  *** The last 200 lines of the pilot log: ***
[2025-10-11 18:50:03]  storage_token=
[2025-10-11 18:50:03]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6838454042/log.46676269._059367.job.log.tgz.1
[2025-10-11 18:50:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/26/f8/log.46676269._059367.job.log.tgz.1
[2025-10-11 18:50:03]  workdir=None
[2025-10-11 18:50:03] ]
[2025-10-11 18:50:03] 2025-10-11 22:48:53,477 | INFO     | transferring file log.46676269._059367.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6838454042/log.46676269._059367.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 18:50:03] 2025-10-11 22:48:53,478 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6838454042/log.46676269._059367.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._059367.job
[2025-10-11 18:50:03] 2025-10-11 22:48:53,499 | INFO     | adding to output.list: log.46676269._059367.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/26/f8/log.46676269._059367.job.log.tg
[2025-10-11 18:50:03] 2025-10-11 22:48:53,500 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 18:50:03] 2025-10-11 22:48:53,500 | INFO     | summary of transferred files:
[2025-10-11 18:50:03] 2025-10-11 22:48:53,501 | INFO     |  -- lfn=log.46676269._059367.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 18:50:03] 2025-10-11 22:48:53,501 | INFO     | stage-out finished correctly
[2025-10-11 18:50:03] 2025-10-11 22:48:53,585 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 18:50:03] 2025-10-11 22:48:53,992 | INFO     | time since job start (4143s) is within the limit (172800.0s)
[2025-10-11 18:50:03] 2025-10-11 22:48:55,288 | INFO     | monitor loop #310: job 0:6838454042 is in state 'finished'
[2025-10-11 18:50:03] 2025-10-11 22:48:55,288 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 18:50:03] 2025-10-11 22:48:55,997 | INFO     | time since job start (4145s) is within the limit (172800.0s)
[2025-10-11 18:50:03] 2025-10-11 22:48:56,144 | INFO     | job 6838454042 has state=finished
[2025-10-11 18:50:03] 2025-10-11 22:48:56,144 | INFO     | preparing for final server update for job 6838454042 in state='finished'
[2025-10-11 18:50:03] 2025-10-11 22:48:56,215 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-11 18:50:03] 2025-10-11 22:48:56,215 | INFO     | this job has now completed (state=finished)
[2025-10-11 18:50:03] 2025-10-11 22:48:56,216 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 18:50:03] 2025-10-11 22:48:56,216 | INFO     | log transfer has been attempted: DONE
[2025-10-11 18:50:03] 2025-10-11 22:48:56,216 | INFO     | job 6838454042 has finished - writing final server update
[2025-10-11 18:50:03] 2025-10-11 22:48:56,216 | INFO     | total number of processed events: 400 (read)
[2025-10-11 18:50:03] 2025-10-11 22:48:56,217 | INFO     | executing command: lscpu
[2025-10-11 18:50:03] 2025-10-11 22:48:56,242 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 18:50:03] 2025-10-11 22:48:57,796 | INFO     | monitor loop #311: job 0:6838454042 is in state 'finished'
[2025-10-11 18:50:03] 2025-10-11 22:48:57,797 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 18:50:03] 2025-10-11 22:48:58,003 | INFO     | time since job start (4148s) is within the limit (172800.0s)
[2025-10-11 18:50:03] 2025-10-11 22:48:59,120 | INFO     | PID=5205 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-11 18:50:03] 2025-10-11 22:49:00,120 | INFO     | time since job start (4150s) is within the limit (172800.0s)
[2025-10-11 18:50:03] 2025-10-11 22:49:00,299 | INFO     | monitor loop #312: job 0:6838454042 is in state 'finished'
[2025-10-11 18:50:03] 2025-10-11 22:49:00,299 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 18:50:03] 2025-10-11 22:49:00,904 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-11 18:50:03] 2025-10-11 22:49:00,906 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1851.0
[2025-10-11 18:50:03] 2025-10-11 22:49:00,908 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838454042/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 18:50:03] 2025-10-11 22:49:00,909 | INFO     | extracted standard info from prmon json
[2025-10-11 18:50:03] 2025-10-11 22:49:00,909 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 18:50:03] 2025-10-11 22:49:00,909 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 18:50:03] 2025-10-11 22:49:00,910 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 18:50:03] 2025-10-11 22:49:00,910 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 18:50:03] 2025-10-11 22:49:00,911 | INFO     | fitting pss+swap vs Time
[2025-10-11 18:50:03] 2025-10-11 22:49:00,911 | INFO     | sum of square deviations: 70364110.0
[2025-10-11 18:50:03] 2025-10-11 22:49:00,912 | INFO     | sum of deviations: -6769421320.000001
[2025-10-11 18:50:03] 2025-10-11 22:49:00,912 | INFO     | mean x: 1760220954.0
[2025-10-11 18:50:03] 2025-10-11 22:49:00,912 | INFO     | mean y: 2774187.426229508
[2025-10-11 18:50:03] 2025-10-11 22:49:00,912 | INFO     | -- intersect: 169345884672.56335
[2025-10-11 18:50:03] 2025-10-11 22:49:00,912 | INFO     | intersect: 169345884672.56335
[2025-10-11 18:50:03] 2025-10-11 22:49:00,912 | INFO     | chi2: 0.04764349807326372
[2025-10-11 18:50:03] 2025-10-11 22:49:00,913 | INFO     | -- intersect: 169345884672.56335
[2025-10-11 18:50:03] 2025-10-11 22:49:00,913 | INFO     | current memory leak: -96.21 B/s (using 61 data points, chi2=0.05)
[2025-10-11 18:50:03] 2025-10-11 22:49:00,913 | INFO     | could have reported an average CPU frequency of 2058 MHz (6 samples)
[2025-10-11 18:50:03] 2025-10-11 22:49:00,913 | INFO     | ..............................
[2025-10-11 18:50:03] 2025-10-11 22:49:00,913 | INFO     | . Timing measurements:
[2025-10-11 18:50:03] 2025-10-11 22:49:00,913 | INFO     | . get job = 0 s
[2025-10-11 18:50:03] 2025-10-11 22:49:00,913 | INFO     | . initial setup = 3 s
[2025-10-11 18:50:03] 2025-10-11 22:49:00,914 | INFO     | . payload setup = 7 s
[2025-10-11 18:50:03] 2025-10-11 22:49:00,914 | INFO     | . stage-in = 0 s
[2025-10-11 18:50:03] 2025-10-11 22:49:00,914 | INFO     | . payload execution = 4115 s
[2025-10-11 18:50:03] 2025-10-11 22:49:00,914 | INFO     | . stage-out = 0 s
[2025-10-11 18:50:03] 2025-10-11 22:49:00,914 | INFO     | . log creation = 0 s
[2025-10-11 18:50:03] 2025-10-11 22:49:00,914 | INFO     | ..............................
[2025-10-11 18:50:03] 2025-10-11 22:49:00,997 | INFO     | 
[2025-10-11 18:50:03] 2025-10-11 22:49:00,998 | INFO     | job summary report
[2025-10-11 18:50:03] 2025-10-11 22:49:00,998 | INFO     | --------------------------------------------------
[2025-10-11 18:50:03] 2025-10-11 22:49:00,998 | INFO     | PanDA job id: 6838454042
[2025-10-11 18:50:03] 2025-10-11 22:49:00,998 | INFO     | task id: 46676269
[2025-10-11 18:50:03] 2025-10-11 22:49:00,998 | INFO     | errors: (none)
[2025-10-11 18:50:03] 2025-10-11 22:49:00,999 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 18:50:03] 2025-10-11 22:49:00,999 | INFO     | pilot state: finished 
[2025-10-11 18:50:03] 2025-10-11 22:49:00,999 | INFO     | transexitcode: 0
[2025-10-11 18:50:03] 2025-10-11 22:49:00,999 | INFO     | exeerrorcode: 0
[2025-10-11 18:50:03] 2025-10-11 22:49:00,999 | INFO     | exeerrordiag: 
[2025-10-11 18:50:03] 2025-10-11 22:49:00,999 | INFO     | exitcode: 0
[2025-10-11 18:50:03] 2025-10-11 22:49:01,000 | INFO     | exitmsg: OK
[2025-10-11 18:50:03] 2025-10-11 22:49:01,000 | INFO     | cpuconsumptiontime: 44793 s
[2025-10-11 18:50:03] 2025-10-11 22:49:01,000 | INFO     | nevents: 400
[2025-10-11 18:50:03] 2025-10-11 22:49:01,000 | INFO     | neventsw: 0
[2025-10-11 18:50:03] 2025-10-11 22:49:01,000 | INFO     | pid: 11679
[2025-10-11 18:50:03] 2025-10-11 22:49:01,000 | INFO     | pgrp: 11679
[2025-10-11 18:50:03] 2025-10-11 22:49:01,000 | INFO     | corecount: 12
[2025-10-11 18:50:03] 2025-10-11 22:49:01,001 | INFO     | event service: False
[2025-10-11 18:50:03] 2025-10-11 22:49:01,001 | INFO     | sizes: {0: 2348685, 1: 2348884, 6: 2349146, 11: 2349174, 4126: 2375021, 4127: 2384203, 4134: 2384341}
[2025-10-11 18:50:03] 2025-10-11 22:49:01,001 | INFO     | --------------------------------------------------
[2025-10-11 18:50:03] 2025-10-11 22:49:01,001 | INFO     | 
[2025-10-11 18:50:03] 2025-10-11 22:49:01,001 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 18:50:03] 2025-10-11 22:49:01,024 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 18:50:03] 2025-10-11 22:49:01,025 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 18:50:03] 2025-10-11 22:49:01,025 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 18:50:03] 2025-10-11 22:49:01,025 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 18:50:03] 2025-10-11 22:49:01,025 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 18:50:03] 2025-10-11 22:49:01,025 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 18:50:03] 2025-10-11 22:49:01,026 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 18:50:03] 2025-10-11 22:49:01,026 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 18:50:03] 2025-10-11 22:49:01,026 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 18:50:03] 2025-10-11 22:49:01,026 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 18:50:03] 2025-10-11 22:49:01,026 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 18:50:03] 2025-10-11 22:49:01,026 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 18:50:03] 2025-10-11 22:49:01,027 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 18:50:03] 2025-10-11 22:49:01,027 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 18:50:03] 2025-10-11 22:49:01,027 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 18:50:03] 2025-10-11 22:49:01,027 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 18:50:03] 2025-10-11 22:49:01,027 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 18:50:03] 2025-10-11 22:49:01,028 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 18:50:03] 2025-10-11 22:49:01,028 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 18:50:03] 2025-10-11 22:49:01,028 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 18:50:03] 2025-10-11 22:49:01,028 | INFO     | job 6838454042 has completed (purged errors)
[2025-10-11 18:50:03] 2025-10-11 22:49:01,028 | INFO     | overall cleanup function is called
[2025-10-11 18:50:03] 2025-10-11 22:49:02,037 | INFO     | --- collectZombieJob: --- 10, [11679]
[2025-10-11 18:50:03] 2025-10-11 22:49:02,037 | INFO     | zombie collector waiting for pid 11679
[2025-10-11 18:50:03] 2025-10-11 22:49:02,037 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 18:50:03] 2025-10-11 22:49:02,038 | INFO     | collected zombie processes
[2025-10-11 18:50:03] 2025-10-11 22:49:02,038 | INFO     | will attempt to kill all subprocesses of pid=11679
[2025-10-11 18:50:03] 2025-10-11 22:49:02,130 | INFO     | process IDs to be killed: [11679] (in reverse order)
[2025-10-11 18:50:03] 2025-10-11 22:49:02,182 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 18:50:03] 2025-10-11 22:49:02,182 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 18:50:03] 2025-10-11 22:49:02,185 | INFO     | did not find any defunct processes belonging to 11679
[2025-10-11 18:50:03] 2025-10-11 22:49:02,188 | INFO     | did not find any defunct processes belonging to 11679
[2025-10-11 18:50:03] 2025-10-11 22:49:02,188 | INFO     | ready for new job
[2025-10-11 18:50:03] 2025-10-11 22:49:02,188 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 18:50:03] 2025-10-11 22:49:02,189 | INFO     | ***************************************
[2025-10-11 18:50:03] 2025-10-11 22:49:02,189 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 18:50:03] 2025-10-11 22:49:02,189 | INFO     | ***************************************
[2025-10-11 18:50:03] 2025-10-11 22:49:02,189 | INFO     | 
[2025-10-11 18:50:03] 2025-10-11 22:49:02,190 | INFO     | architecture information:
[2025-10-11 18:50:03] 2025-10-11 22:49:02,191 | INFO     | executing command: cat /etc/os-release
[2025-10-11 18:50:03] 2025-10-11 22:49:02,205 | INFO     | cat /etc/os-release:
[2025-10-11 18:50:03] NAME="CentOS Linux"
[2025-10-11 18:50:03] VERSION="7 (Core)"
[2025-10-11 18:50:03] ID="centos"
[2025-10-11 18:50:03] ID_LIKE="rhel fedora"
[2025-10-11 18:50:03] VERSION_ID="7"
[2025-10-11 18:50:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 18:50:03] ANSI_COLOR="0;31"
[2025-10-11 18:50:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 18:50:03] HOME_URL="https://www.centos.org/"
[2025-10-11 18:50:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 18:50:03] 
[2025-10-11 18:50:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 18:50:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 18:50:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 18:50:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 18:50:03] 
[2025-10-11 18:50:03] 2025-10-11 22:49:02,206 | INFO     | ***************************************
[2025-10-11 18:50:03] 2025-10-11 22:49:02,709 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 18:50:03] 2025-10-11 22:49:02,727 | INFO     | sufficient remaining disk space (29373759488 B)
[2025-10-11 18:50:03] 2025-10-11 22:49:02,727 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 18:50:03] 2025-10-11 22:49:02,727 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 18:50:03] 2025-10-11 22:49:02,727 | INFO     | update_server=False
[2025-10-11 18:50:03] 2025-10-11 22:49:02,728 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 18:50:03] 2025-10-11 22:49:02,728 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 18:50:03] 2025-10-11 22:49:02,802 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 18:50:03] 2025-10-11 22:49:02,803 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 18:50:03] 2025-10-11 22:49:02,803 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 18:50:03] 2025-10-11 22:49:02,803 | INFO     | will abort loop
[2025-10-11 18:50:03] 2025-10-11 22:49:03,107 | INFO     | all data control threads have been joined
[2025-10-11 18:50:03] 2025-10-11 22:49:03,273 | INFO     | all job control threads have been joined
[2025-10-11 18:50:03] 2025-10-11 22:49:03,733 | INFO     | [job] retrieve thread has finished
[2025-10-11 18:50:03] 2025-10-11 22:49:03,734 | INFO     | [job] queue monitor thread has finished
[2025-10-11 18:50:03] 2025-10-11 22:49:03,809 | INFO     | [job] job monitor thread has finished
[2025-10-11 18:50:03] 2025-10-11 22:49:03,938 | INFO     | all payload control threads have been joined
[2025-10-11 18:50:03] 2025-10-11 22:49:04,097 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 18:50:03] 2025-10-11 22:49:04,113 | INFO     | [data] control thread has finished
[2025-10-11 18:50:03] 2025-10-11 22:49:04,176 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 18:50:03] 2025-10-11 22:49:04,278 | INFO     | [job] control thread has finished
[2025-10-11 18:50:03] 2025-10-11 22:49:04,289 | INFO     | [job] validate thread has finished
[2025-10-11 18:50:03] 2025-10-11 22:49:04,503 | INFO     | [payload] validate_post thread has finished
[2025-10-11 18:50:03] 2025-10-11 22:49:04,685 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 18:50:03] 2025-10-11 22:49:04,687 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 18:50:03] 2025-10-11 22:49:04,934 | INFO     | [payload] failed_post thread has finished
[2025-10-11 18:50:03] 2025-10-11 22:49:04,942 | INFO     | [payload] control thread has finished
[2025-10-11 18:50:03] 2025-10-11 22:49:05,177 | INFO     | [data] copytool_in thread has finished
[2025-10-11 18:50:03] 2025-10-11 22:49:05,223 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 18:50:03] 2025-10-11 22:49:06,099 | INFO     | [data] copytool_out thread has finished
[2025-10-11 18:50:03] 2025-10-11 22:49:08,181 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 18:50:03] 2025-10-11 22:49:13,419 | INFO     | job.realtimelogging is not enabled
[2025-10-11 18:50:03] 2025-10-11 22:49:14,424 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 18:50:03] 2025-10-11 22:49:33,322 | INFO     | PID=5205 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-11 18:50:03] 2025-10-11 22:49:33,323 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 18:50:03] 2025-10-11 22:49:33,323 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 18:50:03] 2025-10-11 22:49:33,323 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 18:50:03] 2025-10-11 22:49:56,824 | INFO     | [monitor] cgroup control has ended
[2025-10-11 18:50:03] 2025-10-11 22:49:57,723 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139893747906368)>', '<ExcThread(monitor, started 139893141378816)>']
[2025-10-11 18:50:03] 2025-10-11 22:49:58,441 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 18:50:03] 2025-10-11 22:49:58,441 | INFO     | [monitor] control thread has ended
[2025-10-11 18:50:03] 2025-10-11 22:50:02,728 | INFO     | all workflow threads have been joined
[2025-10-11 18:50:03] 2025-10-11 22:50:02,729 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 18:50:03] 2025-10-11 22:50:02,729 | INFO     | traces error code: 0
[2025-10-11 18:50:03] 2025-10-11 22:50:02,729 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 18:50:03] 2025-10-11 22:50:02,811 [wrapper] ==== pilot stdout END ====
[2025-10-11 18:50:03] 2025-10-11 22:50:02,815 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 18:50:03] 2025-10-11 22:50:02,819 [wrapper] pilotpid: 5205
[2025-10-11 18:50:03] 2025-10-11 22:50:02,823 [wrapper] Pilot exit status: 0
[2025-10-11 18:50:03] 2025-10-11 22:50:02,838 [wrapper] pandaids: 6838454042
[2025-10-11 18:50:03] 2025-10-11 22:50:02,885 [wrapper] cleanup supervisor_pilot 15977 5206
[2025-10-11 18:50:03] 2025-10-11 22:50:02,889 [wrapper] Test setup, not cleaning
[2025-10-11 18:50:03] 2025-10-11 22:50:02,893 [wrapper] apfmon messages muted
[2025-10-11 18:50:03] 2025-10-11 22:50:02,897 [wrapper] ==== wrapper stdout END ====
[2025-10-11 18:50:03] 2025-10-11 22:50:02,901 [wrapper] ==== wrapper stderr END ====
[2025-10-11 18:50:03]  *** Error codes and diagnostics ***
[2025-10-11 18:50:03]     "exeErrorCode": 0,
[2025-10-11 18:50:03]     "exeErrorDiag": "",
[2025-10-11 18:50:03]     "pilotErrorCode": 0,
[2025-10-11 18:50:03]     "pilotErrorDiag": "",
[2025-10-11 18:50:03]  *** Listing of results directory ***
[2025-10-11 18:50:03] total 402984
[2025-10-11 18:50:03] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 10:01 pilot3.tar.gz
[2025-10-11 18:50:03] -rwx------ 1 boincer umatlas     36292 Oct 11 10:28 runpilot2-wrapper.sh
[2025-10-11 18:50:03] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 10:28 queuedata.json
[2025-10-11 18:50:03] -rw-r--r-- 1 boincer umatlas       100 Oct 11 17:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 18:50:03] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 17:39 run_atlas
[2025-10-11 18:50:03] -rw-r--r-- 1 boincer umatlas       105 Oct 11 17:39 job.xml
[2025-10-11 18:50:03] -rw-r--r-- 2 boincer umatlas 219921363 Oct 11 17:39 EVNT.46676267._002386.pool.root.1
[2025-10-11 18:50:03] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 17:39 start_atlas.sh
[2025-10-11 18:50:03] drwxrwx--x 2 boincer umatlas      4096 Oct 11 17:39 shared
[2025-10-11 18:50:03] -rw-r--r-- 2 boincer umatlas    569676 Oct 11 17:39 input.tar.gz
[2025-10-11 18:50:03] -rw-r--r-- 1 boincer umatlas         0 Oct 11 17:39 boinc_lockfile
[2025-10-11 18:50:03] -rw-r--r-- 1 boincer umatlas      2549 Oct 11 17:39 pandaJob.out
[2025-10-11 18:50:03] -rw------- 1 boincer umatlas    975528 Oct 11 17:39 agis_schedconf.cvmfs.json
[2025-10-11 18:50:03] -rw------- 1 boincer umatlas   1560580 Oct 11 17:39 agis_ddmendpoints.agis.ALL.json
[2025-10-11 18:50:03] drwx------ 5 boincer umatlas      4096 Oct 11 17:39 pilot3
[2025-10-11 18:50:03] -rw-r--r-- 1 boincer umatlas      5953 Oct 11 18:47 init_data.xml
[2025-10-11 18:50:03] -rw------- 1 boincer umatlas 186842331 Oct 11 18:48 HITS.46676269._059367.pool.root.1
[2025-10-11 18:50:03] -rw------- 1 boincer umatlas        95 Oct 11 18:48 pilot_heartbeat.json
[2025-10-11 18:50:03] -rw------- 1 boincer umatlas      1049 Oct 11 18:48 memory_monitor_summary.json
[2025-10-11 18:50:03] -rw------- 1 boincer umatlas    388599 Oct 11 18:48 log.46676269._059367.job.log.tgz.1
[2025-10-11 18:50:03] -rw-r--r-- 1 boincer umatlas       529 Oct 11 18:48 boinc_task_state.xml
[2025-10-11 18:50:03] -rw------- 1 boincer umatlas      7859 Oct 11 18:49 heartbeat.json
[2025-10-11 18:50:03] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 18:50 boinc_mmap_file
[2025-10-11 18:50:03] -rw-r--r-- 1 boincer umatlas        27 Oct 11 18:50 wrapper_checkpoint.txt
[2025-10-11 18:50:03] -rw------- 1 boincer umatlas      5003 Oct 11 18:50 pilotlog.txt
[2025-10-11 18:50:03] -rw------- 1 boincer umatlas    607188 Oct 11 18:50 log.46676269._059367.job.log.1
[2025-10-11 18:50:03] -rw------- 1 boincer umatlas       357 Oct 11 18:50 output.list
[2025-10-11 18:50:03] -rw-r--r-- 1 boincer umatlas       620 Oct 11 18:50 runtime_log
[2025-10-11 18:50:03] -rw------- 1 boincer umatlas   1013760 Oct 11 18:50 result.tar.gz
[2025-10-11 18:50:03] -rw------- 1 boincer umatlas       659 Oct 11 18:50 6fuNDmukpR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm83RMDmNemtvn.diag
[2025-10-11 18:50:03] -rw-r--r-- 1 boincer umatlas      8705 Oct 11 18:50 runtime_log.err
[2025-10-11 18:50:03] -rw-r--r-- 1 boincer umatlas     22226 Oct 11 18:50 stderr.txt
[2025-10-11 18:50:03] HITS file was successfully produced:
[2025-10-11 18:50:03] -rw------- 1 boincer umatlas 186842331 Oct 11 18:48 shared/HITS.pool.root.1
[2025-10-11 18:50:03]  *** Contents of shared directory: ***
[2025-10-11 18:50:03] total 398804
[2025-10-11 18:50:03] -rw-r--r-- 2 boincer umatlas 219921363 Oct 11 17:39 ATLAS.root_0
[2025-10-11 18:50:03] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 17:39 start_atlas.sh
[2025-10-11 18:50:03] -rw-r--r-- 2 boincer umatlas    569676 Oct 11 17:39 input.tar.gz
[2025-10-11 18:50:03] -rw------- 1 boincer umatlas 186842331 Oct 11 18:48 HITS.pool.root.1
[2025-10-11 18:50:03] -rw------- 1 boincer umatlas   1013760 Oct 11 18:50 result.tar.gz
18:50:04 (1357): run_atlas exited; CPU time 44763.477487
18:50:04 (1357): called boinc_finish(0)

</stderr_txt>
]]>

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